#NEXUS [written Mon Mar 18 16:10:24 EDT 2013 by Mesquite version 2.74 (build 550) at cesar-herreras-MacBook-Pro.local/10.109.194.193] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Cosmospora_stegonsporii_AR4385 Corallomycetella_repens_AR4547 Pseudocosmospora_eutypellae_AR4562 Microcera_larvarum_AR4580 Pseudocosmospora_joca_AR4779 Cosmospora_viridescens__CBS102433 Dialonectria_sp_CH1014 Pseudocosmospora_eutypae_CH1101 Dialonectria_sp_GJS091197 Cosmospora_viliuscula_GJS09411 Cosmospora_viliuscula_GJS10247 Cosmospora_viliuscula_GJS83197 Microcera_coccophila_GJS83198 Cosmospora_viliuscula_GJS86315 Pseudocosmospora_rogersonii_GJS9056 Microcera_coccophila_GJS9850 Cosmospora_flavoviridis_IMI338173 Microcera_coccophila_MF241482 Cosmospora_obscura_MF241484 Pseudocosmospora_vilior_PC1246 ; END; BEGIN CHARACTERS; TITLE mcm7; DIMENSIONS NCHAR=570; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Cosmospora_stegonsporii_AR4385 tgcgatagatgtggatgtgaaatcttccagcctattagcgacaggcagtatggccccttaaccatgtgtccctcgtccgactgcaaggccaatcagtccaagggccagttgaatccttcttcaagagcatccaagttcttgccgttccaggaggtcaaggttcaggagatggcagaacaagtccccatcggtcagattcctcgaagtctcactgtcatgtgcttcggtagccttgtcagaaaaatcagtcctggtgatgtggtcgatatctctggcatcttcttgcccactccttatactggcttcaaggccatgaaagccggtctacttactgacacctacgtcgaagctcaccatgtccgtcaacacaagaaggcttatagcgagatgatcgttgacctttcactggtccgaagaattgagaaatatcgtcagaccggccaagtatacgagctcctcgccaagtcgattgcccctgagatttttgggcatcttgatgtgaagaaatctctccttttgcttctcatcggcggtgtcacgaaagagatgggcgatggcatgaa------- Corallomycetella_repens_AR4547 tgcgataggtgtggttgcgaaatcttccagcccgtgagcgagagacagtacggccccctgacgatgtgcccctccaccgattgcaaggagaaccaatccaggggacaactgaacccctcgtcgagggcctccaagtttctgcctttccaggaggtcaaggtgcaggagatggcagagcaagttcccatcggccagattcctcgcagtctcaccgtcatgtgctatggcaccctggtcagaaaagtgaaccctggcgacgtcattgatatctctggcatcttcctccccaccccatacaccgggtttaaggccatgagggcaggcctgctgaccgatacctaccttgaggctcaccatattcttcagcacaagaaggcctacagcgagatgatcgtggatccggcgttggttcgacgaatcgagaaatatcgccagacaggtcaggtctatgagcttcttgccaagtccatcgcccctgagatctacggccacctggatgtcaagaaggctctcctcctgctcctcattggcggagtaaacaaggagatgggtgacggcatgaagattcgt Pseudocosmospora_eutypellae_AR4562 tgcgaccgttgtggttgtgaaatcttccagcctatcagcgacaagcagtacggccctctgacgatgtgtccctcgtccgactgcaagtcgaatcagtccaagggtcagctgaacccttcatcccgggcgtccaagttcctacctttccaggaagtcaaggtgcaggagatggcggagcaagttcccatcggtcagattcctcgaagtctgaccgtcatgtgctacggcagtctcgtcagacagatcaaccctggtgatgtcgttgacatctctggcatcttcctaccaactccttataccggcttcaaggctatgaaggccggcctactgactgatacctacgtggaggctcaccacatccttcagcacaagaaggcctacagcgagatgattgtagatccttcgttggtgcgaagaatcgaaaagtaccgccagactggtcaagtctacgagctcctcgccaagtcgattgcccctgagattttcggccatctcgatgtcaagaaagccctcttgttgctccttattggcggtgttaccaaggagatgggcgacggtatgaagattcgt Microcera_larvarum_AR4580 tgcgatcgatgcggttgcgaaattttccagcctatcaacgagaagcagtacggtcccttaacgatgtgtccatcttcagactgcaagaacaatcagtccagaggccaattgaatccttcctctcgagcgtcgaaattcctaccattccaggaggttaaggttcaggagatggcagagcaagtgcccatcggccagattccacgaagtcttactgttatgtgctacggtacactcgtccggaagatcaaccccggtgatgtggtggatatctctggaattttcctgcctactccatataccggcttcaaggctatgaaggctggcctgctcaccgacacctatctcgaggctcaccacatcctccaacacaaaaaggcctacagtgaaatgattgtggatcctatgctggtgcgaagaatcgaaaagtaccgtcaaagtggccaggtgtacgagctccttgcaaagtcgatcgctcctgagattttcggacatctcgacgtaaagaaggctcttcttctgctccttatcggtggtgtcaataaagagatgggtgacggcatgaagatccgt Pseudocosmospora_joca_AR4779 tgcgacagatgcggttgcgaaatcttccagcccattagcgacaggcagtatggccccttgtcaatgtgcccctcgtccgactgcaaggccaaccagtccaagggccagttgaacccttcttctcgggcctccaaattcttgcctttccaagaggtcaaggttcaggagatggcagaacaagttcccatcggccaaattcctcgaagtctcactgtcatgtgctacgggagcctcgtcagacaaatcaaccctggtgatgtcgttgacatctccggtatcttcctgcctactccctatactggtttcaaagcgatgaaggctggactcctgactgatacttatgtggaggctcaccatatccttcagcataagaaggcttacagtgagatgattgtcgacccttcattggtgcgaagaatcgagaaatatcgccaaactggacaagtgtacgagcttctcgccaagtcaatcgctcccgagattttcggacttctcgatgttaagaaatccctgcttctactcctgattggtggtgtcaacaaggagatgggcgatggcatgaagattcgt Cosmospora_viridescens__CBS102433 tgcgacagatgtggttgcgaaatcttccagcccatcagcgacaggcagtacggcccgctgacgatgtgtccctcgtccgactgcaaggccaaccaatccaagggtcagctgaacccttcctctcgagcctccaagtttttgccgttccaggaagtcaaggtgcaggagatggcggaacaagttcccatcggtcagatccctcgaagtctcaccgtcatgtgctacggcagtcttgtcaggaagatcagccctggtgatgtcgttaacatctctggcatcttcctgcccactccatacactggcttcaaggccatgaaagctggtctcctgactgacacctatctggaagcccatcacgtcgtccagcacatcaaagcttacagcgagatgatcatcgaccctacattggtgcgaagaatcgagaagtaccgccagactggccaagtctacgagctcctcgctaagtccatcgcccctgagattttcggacatcttgatgtcaagaaggctctcctcttgctccttatcggtggcgtcacaaaggagatgggcgacggcatgaagattcgt Dialonectria_sp_CH1014 tgtgacagatgtggttgcgagatctttcagcctatcagtgacaggcagtacggccctttgacaatgtgtccgtcagaggactgcaaggccaaccagtccaaaggccagttgaacccgtcttctcgagcctccaagtttctcccatttcaggaagtgaaggttcaggagatggcagaacaagtccccatcggacagattcctcggagtcttaccgtcatgtgttacggcagcctcgttaggaagattagccctggtgatgttgttgacatctctggcatcttcttgcctactccctacaccggcttcaaggctatgaaggctggtctgttgacggatactttcgtcgaagcccaccatgtccgtcaacacaagaaggcttatagcgagatgatagtagaccccacattggtacgaagaatcgaaaagtatcgtcagaccggccaggtctacgaactcctcgccaagtccatcgctcccgagatctttggccatctcgacgtcaagaaatgcctcctattactcctgattggtggtgtctctaaggagatgggggatgggatgaaaattcgt Pseudocosmospora_eutypae_CH1101 tgcgacagatgtggttgcgaaatcttccaacccatcagcgataggcagtacggtcccttgacgatgtgtccctcgtccgactgcaagtccaaccagtccaagggtcaactgaatccgtcttcccgagcttccaagttcctgcccttccaggaagtcaaggttcaggagatggcagagcaagttcccatcggccagatccctcgaagcctcactgtcatgtgctacggcagtcttgtcaggcagatcaaccctggagatgtggttgacatttctggcatcttcctgccgactccctatactggcttcaaggctatgaaggccgggctactgactgatacctacgtggaggctcaccatatccttcagcataagaaggcctacagtgagatgatcgttgacccttcgctggtgcgaagaatcgacaagtatcgccagaccggacaagtctacgaacttctcgccaagtcgatcgcccccgagattttcggccatcttgatgttaagaaggccctccttctgctcctcattggtggtgtcaacaaggaaatgggcgacggcatgaagattcgc Dialonectria_sp_GJS091197 ----------------gcgagatcttccagcctatcagtgacaggcagtacggcccgttgacgatgtgtccatcagaggactgcaaggccaaccagtccaagggccagctgaacccgtcttctcgagcctccaagttcctcccattccaggaagtgaaggtccaggagatggcagaacaagtccccatcggacagattcctcggagtcttactgtcatgtgttacggcagcctcgttaggaagatcagccctggtgatgtcgttgacatctctggcatcttcttgcctaccccctacaccggattcaaggctatgaaggctggcctattgaccgataccttcgtcgaagcccaccatgtccgccagcacaagaaggcttatagcgagatgatagtcgaccccacattggtgcgaagaatcgaaaagtatcgccagaccggccaggtctatgaacttctcgccaaatccatcgcccccgagatctttggccatctggacgtcaagaagtgcctcctcttactcctcattggtggtgtctcgaaggagatgggggacggc------------ Cosmospora_viliuscula_GJS09411 tgcgacagatgcggctgcgaaatcttccagcccatcagcgacaagcagtatgggcccctgacaatgtgcccgtcttcggactgcaaggccaatcagtccaagggccagctgaacccttcctcacgagcctccaaatttttgccgtttcaggaggtcaaggtacaagagttggcagaacaggtccccatcggtcagatccctcgaagtctcaccgtcatgtgctacggcagcctcgtcagacagatcaaccctggcgatgtggtcgatatctctggcatcttcctgcctactccttacactggctttaaggctatgaaggctggcctattgaccgatacctatgtggaggcccatcacattgttcagcacatcaaggcctacagcgagatgattgtcgacccttctctggtacgaaggatcgagaagtatcgccagaccggccaagtctacgagctcctcgccaagtcgatcgcccctgagattttcggtcaccttgacgttaagaagtccctcctccttctacttatcggaggtgtcacaaaagagatgggcgatggcatgaagattcgt Cosmospora_viliuscula_GJS10247 tgtgacaggtgtggctgtgagatctttcagcccatcagcgataagcagtacggtccgttgacaatgtgtccctccaaagactgcaaagacaaccagtccaggggccagttgaacccttcctctcgagcatccaaattcctgccattccaggaagtcaaggtgcaggagatggcggaacaagttcccatcggtcagattcctcgaagtctcaccgtgatgtgctacggcagtcttgtcaggcagattagccctggtgacgtggtcgacatctcgggcatcttcctgcctaccccttacaccggcttcaaggccatgaaggccggccttttgactgatacatatgtggaggcccatcacgtcgttcagcacattaaggcttacagtgagatgattgtcgatcctaccctggtgcgaagaatcgagaactatcgccagactggccaagtctacgagctcctcgccaaatcgatcgcccctgagatttttggacaccttgacgtcaagaaagccctccttttgctcctcatcggtggcgttacaaaggaaatgggcgatggaatgaagattcgt Cosmospora_viliuscula_GJS83197 tgcgacagatgcggttgcgagatcttccagcccatcggcgataagcagtacggccccctgacaatgtgcccttcttccgactgcaaggccaaccagtccaagggccagttgaacccttcctctcgagcctccaaatttttgccgtttcaggaagtcaaggtccaggagatggcagaacaggttcccatcggacagattcctcgaagtctcaccgtgatgtgttttggcagtctcgtcaggcagatcagccctggtgacgtggtcgatatctctggcatcttcctccccactccttacactgggttcaaggccatgaaggctggtctattgactgatacctatatcgaggcccatcatgtcaatcagcacatcaaggcttacagcgagatgattgtcgatcctacattagtgcgacgaatcgagaagtatcgccagactggtcaagtctacgagctcctcgccaagtcgattgcccccgagattttcggacaccttgatgtcaagaaggctctccttttgctcctcattggtggtgtcacaaaggagatgggcgatggcatgaagatccgt Microcera_coccophila_GJS83198 tgcgaccgatgcggttgcgaaatcttccagcctattagcgagaagcagtacggccccttaacgatgtgtccatcttccgactgcaagaacaatcaatcgaggggccagttgaatccctcttccagagcctccaagttcttgccgttccaagaggtcaaggtccaggagatggcggagcaagtgcccattggtcagattccccgaagtcttactgttatgtgctacggtactctcgtcaggaagatcaatcctggcgatgtggtggatatttctggaatcttcttgcctacaccttacactggtttcaaggctatgaaggctggattgctgaccgatacctatattgaggcccatcacattcttcagcacaagaaggcatacagcgaaatgattgttgatcccatgctggtacgacggatcgagaagtaccgccaatccggtcaagtctacgaactccttgcgaagtcgattgctcccgagatttttggacatcttgacgtgaagaaggctcttcttctgcttcttatcggcggtgtcaccaaggagatgggcgacagcatgaagattcgt Cosmospora_viliuscula_GJS86315 tgcgaccgatgtgggtgcgaaatcttccaacccatcagcgataagcagtatggccccctgacaatgtgcccttcttccgactgcaaggccaaccagtccaagggccagttgaacccttcctctcgagcctccaaattcttgccgttccaggaagtcaaggtacaggagctggcggaacaggttcccatcggccagatccctcgaagtctcaccgtcatgtgttacggcagtctcgtcagacagatcaaccctggcgacgtggtcgatatctccggcatcttcctgcctactccttacactggcttcaaggctatgaaggctggtctattgactgatacctatgtggaggctcatcacgttgttcagcacatcaaggcctacagcgagatgatcgtcgatcctaccttggtgcgaaggatcgagaaatatcgccagaccggccaagtctacgagctgctcgccaagtcgatcgccccagagatttttgggcaccttgacgttaaaaagtctctcctcttgctgcttatcggtggtgtaacaaaggagatgggcgatggcatgaagatccgt Pseudocosmospora_rogersonii_GJS9056 tgcgaccgatgtggttgtgaaatcttccagcctatcagcgacaagcagtacgggcctctgacgatgtgtccctcgtccgactgcaaatcgaatcagtccaagggtcagctgaacccttcatcccgggcgtccaagttcctacctttccaggaagtcaaggtgcaggagatggcggagcaagtccccatcggtcagattcctcgaagtctgactgtcatgtgctacggtagtctcgtcagacagatcaaccctggtgatgtcgttgacatctctggcatcttcctaccaactccttacaccggcttcaaggctatgaaggccggcctactgactgatacttacgtggaggctcaccacatccttcagcacaagaaggcctacagcgagatgattgtagatccttcgttggtgcgaagaatcgaaaagtaccgccagactggtcaagtctacgagctcctcgccaagtcgattgcccctgagattttcggccacctcgatgtcaagaaagccctcctgttactccttattggcggtgttggtaaggagatgggcgacggcatgaagattcgt Microcera_coccophila_GJS9850 tgcgaccgatgtggttgcgaaatctttcagcctattagcgagaagcagtacggccccttaaccatgtgtccatcttctgactgcaagaacaatcaatcgagaggccaattgaatccctcatcgagagcctcaaagttcttaccgttccaagaggtcaaggttcaggagatggcagagcaagtgcccatcggtcagattcctcgaagtcttactgtcatgtgctacggtactctcgtcaggaagatcaatcctggtgatgtggtggatatttctgggatcttcttgcctacaccttatactggcttcaaggctatcaaggctggcttgctgaccgatacctatattgaggctcatcacatacttcagcacaagaaggcttacagcgagatgatagttgatcctatgctggtacgaaggatcgagaagtaccgccaatctggtcaagtctatgaactcctggcaaaatcgatcgctcccgagatttttggacatctcgatgtgaagaaggccctgcttctgcttcttatcggcggtgttaccaaggagatgggcgatggcatgaagattcgt Cosmospora_flavoviridis_IMI338173 tgcgacagatgtggttgcgaaatcttccagcctattagcgacaagcaatacggccccttgacgatgtgtccctcatccgactgcaaggccaatcagtccaagggccagctgaacccttcttccagagcctccaagttcttgccgttccaggaggtcaaggttcaggagatggcagaacaagtacctatcggacagatccctcgaagtctcactgtcatgtgctatggcagccttgtgaggaagattagccctggtgatgtggtcgatatctctggaatcttcctgcccactccctatactggattcaaggccatgaaagccggtctcctgacggacacctatgtcgaggctcaccatgtccgtcagcacaagaaggcttacagcgagatgatcgttgaccctacgctggtccgaagaatcgagaaatatcgccagaccggccaagtctacgagctcctcgctaaatcgatcgcccctgagattttcggacatcttgatgtcaagaaatgtctcctcttgctccttattggtggcgtcacaaaagagatgggcgacggcatgaagattcgt Microcera_coccophila_MF241482 tgcgaccgatgtggttgcgaaatcttccagcccatcagtgagaagcagtatggtcccttaacgatgtgtccatcttcagactgcaagaacaatcagtccagaggccaattgaatccttcttctcgagcatcgaaattcctaccattccaggaggtcaaggttcaggagatggcagaacaagtgcccatcggccaaattccacgaagtcttactgttatgtgctacggtaccctcgtccggaagatcaaccccggtgatgtggtggatatctctggaattttcctgcctactccttataccggcttcaaggccatgaaggctggcctgctcaccgacacctatctcgaggctcaccacatcctccaacacaagaaggcctacagtgaaatgattgtggatcctacgctggtacgaagaatcgaaaagtaccgtcaaagtggccaggtgtatgagctccttgcaaagtcgattgctcctgagatttttggacatcttgacgtaaagaaggctcttcttctgctccttatcggtggtgttaacaaagagatgggtgacggcatgaagattcgt Cosmospora_obscura_MF241484 tgcgacagatgtggttgcgaaatcttccagcctattagcgacaggcaatacggccccttgacgatgtgtccctcatctgactgcaaggccaatcagtccaagggccagttgaacccttcttccagagcctccaagttcttgccgttccaggaggtcaaggttcaggagatggcagaacaagtacctatcgggcagattcctcgaagcctcactgtcatgtgctacggtagccttgtgaggaagattagccctggtgacgtggtcgatatctctgggatcttcctgcccactccctatactggattcaaagccatgaaagccggtctcctgactgacacctatgttgaggctcaccatgtccgtcaacacaagaaggcttacagcgagatgatcgttgaccctacgctggtccgaagaatcgagaaatatcgccagaccggccaagtctacgagctcctcgccaaatcgatcgcccctgagattttcggacatcttgatgtcaagaaatgtctcctcttgctcctcatcggtggcgtcacaaaggagatgggcgacggcatgaagattcgt Pseudocosmospora_vilior_PC1246 tgcgacagatgcggctgcgaaatcttccagcctattagcgataagcaatacggccccctgactatgtgtccctcatccgattgcaaatccaaccagtccaagggccagttgaatccttcctctcgagcgtccaagttcctccctttccaggaagtcaaggtccaggaaatggcggaacaggtcccaatcggccagattcctcggagtctcaccgtcatgtgccacggaagccttgtcagacagatcaaccctggcgatgtggtcgacatctcgggcatcttcctgcctaccccctatactgggttcaaggctatgaaggctggcctattaactgacacctatgttgaagcccaccatattcttcagcacaagaaggcttacagcgagatgattgtcgatccctcgctggtgcgaagaatcgacaagtatcgtcagaccggacaggtttacgagcttctcgccaagtccatcgcccctgagatttttgggcatctggacgtcaagaagtcgctccttctactccttatcggcggtgtcaccaaggaaatgggcgatggcatgaagattcgt ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 570; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 570; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 570; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1363637424376; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8769659831746864420; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1485834048851807781; mqVersion 274; checksumv 0 2 531304003 null getNumChars 570 numChars 570 getNumTaxa 20 numTaxa 20 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 234445.0 sumSquares -5.665456273638046E21 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 879; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1485834048851807781 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 219; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 812; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;