#NEXUS [written Mon Mar 18 15:57:03 EDT 2013 by Mesquite version 2.74 (build 550) at cesar-herreras-MacBook-Pro.local/10.109.194.193] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Cosmospora_coccinea_AR2741 Cosmospora_stegonsporii_AR4385 Corallomycetella_repens_AR4547 Pseudocosmospora_eutypellae_AR4562 Microcera_larvarum_AR4580 Pseudonectria_pachysandricola_AR4592 Pseudocosmospora_joca_AR4779 Cosmospora_viridescens__CBS102433 Dialonectria_episphaeria_CH1001 Dialonectria_sp_CH1014 Pseudocosmospora_eutypae_CH1101 Dialonectria_sp_CH1106 Dialonectria_sp_GJS091197 Cosmospora_viliuscula_GJS09411 Cosmospora_viliuscula_GJS10247 Cosmospora_viliuscula_GJS83197 Microcera_coccophila_GJS83198 Cosmospora_viliuscula_GJS86315 Pseudocosmospora_rogersonii_GJS9056 Microcera_coccophila_GJS9850 Cosmospora_flavoviridis_IMI338173 Microcera_coccophila_MF241482 Cosmospora_obscura_MF241484 Pseudocosmospora_vilior_PC1246 ; END; BEGIN CHARACTERS; TITLE rpb1; DIMENSIONS NCHAR=692; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Cosmospora_coccinea_AR2741 ggaga-tagtctgccacaactgcagcaaagtcttggccgataaagttggtctactc------attccatgaagc-tttttggcctattggatgctaatatgattctctcagagcgatcccgaattcgccgccgccattaacactcgagatcctaagcttcgattccaccgcgtctgggaagtttgcaaaaagaagcgaaagtgtgagaacgaagataggaacgacaaaaacaaggaggaagagtatgcgcctggcctgaaacctacagctgtggaaaaccatggaggttgtggtaacgtacagcctgccgttcgacaagccgctcttcaactcaaagccgcctttgatgt---tgtacaagaagatggtcccaagaagcgagagacaacacctatcacgccggagatggcacacggcattctgcgacgcatttccgaacaggacatgcgaaatatgggtcttaactctgactatgctcgacctgagtggatgattctaactgtcctccccgtccccccgccgccagtccgtcctagtatctctatggacgggactggaactggcatgcgaaacgaagacgatttgacctacaagctgggtgatatcatccgtgctaacggaaatgtcaagcaggctatccgcgagggctctcctgcgcatatcgcacgagatttcgaggaactgcttcagta Cosmospora_stegonsporii_AR4385 ggaga-tagtctgccacaactgcagtaaagtgctggccgataaagttggttcactc------atgccatgaagc--ttttggcctattggatgctaacctgatactctcagagcgatcccgaattcgcagccgcgattggtactcgagatcccaagctccgattccaccgagtctgggaagtctgcaagaagaagcggaagtgtgagaacgaggataggaacgacaagaacaaggacgaggagtatgcacctggcatgaaacccacagccgttgaaaaccacggaggctgcggtaatgtacagcctgccgtccgacaagccgctctccaactcaaagccgcttttgatgc---tgttcaagaagacggtgctaagaagcgtgagacaacgcccatcacacctgagatggctcatggcattcttcgtcgaatttcggaacaagatatccgtaatatgggtctcaactctgattacgctcgtcctgagtggatgattcttaccgttcttcctgtacctccaccaccagttcgtccgagtatctctatggacggtactggaacgggcatgcgaaatgaagatgatttgacctacaaacttggcgacatcatccgtgctaatggaaatgtcaagcaggctattcgcgaaggctctcctgcgcatattgcgagagactttgaggaactgctgcaata Corallomycetella_repens_AR4547 ggagatttgtctgccataactgcagcaaggtgttgtccgatactgttagtctatgctgataactgcaaggtatt-tttgggacttggtagatgctaacctggt-ttaacagagcgatccagagttcgtcgccgcgatcaacacgcgagacccaaagcttcgattcaaccgagtgtgggccgtgtgcaagaagaagcgcaagtgtgagaacgaggaccgccagagcaaagacaaggatgacgagttcgtgcccgggatgaaggccgcgcctgccaacaaccacggtggatgtggcaacgtgcagcccgccgttcgccaggccgccctgcaactcaaagccgccttcgacgt---tgtgcaggaggacgggcccaagagacgagagacagttccgatcacgccagagatggcccacggcatcctgcggcgcatctccgaggaggacatgcggaacatgggcctgaactccgactacgctcgcccagaatggatgattgtcacagtccttccggtcccccctcccccagtccggccaagcatttccatggacggcactggcacgggtatgcggaatgaggatgatttgacgtacaagttgggagacatcatccgcgccaacggcaatgttaagcaagccatccgcgaaggatctccgcagcacattgcgcgggatttcgaggagctgctgcaata Pseudocosmospora_eutypellae_AR4562 ggaga-tagtctgccacaattgtagcaaagtgttggccgataaagttggtctactc------gttccatgaagc-tgttcggcctattggatgctaacatgttactttcagagtgatcccgaattcgctgccgccatcaacacccgagaccccaaattacgattccaccgagtttgggaagtctgtaaaaagaagcggaagtgtgaaaacgaggatcgaaatgacaagaacaaggacgaggagtatgggccaggtatgaagcccgcagctgtagagaaccatggaggttgtggcaatgtgcagcctgctgtccgtcaagccgctcttcagctcaaggctgccttcgatgt---ggcccaggaagatggcgccaagaagcgagagacgacaccgataacaccggagatggctcatggcatcctgcgtcgcatttctgagcaggatctacgtaatatgggcctaaactctgattacgccaggcctgaatggatgatccttaccgttctccccgtacccccgccaccagtgcgtcccagtatctccatggacggaacaggaacgggcatgcgaaatgaagatgatttgacatacaaacttggcgacatcattcgtgccaatggaaacgtcaagcaggctattcgtgaaggttctccggcgcatattgccagagacttcgaggacctactgcaata Microcera_larvarum_AR4580 ggaga-ttgtctgccacaactgtagcaaagttttggctgataaagttggtcacctc------actccatgaagc-tttttggcccattggatgctaacctgatgttttcagagcgatcccgaattcgctgcggccatcgctacccgagatcctaagcttcgtttcaaccgcgtctgggaagtttgcaagaagaagcgcaagtgcgagaacgaggacagaaatgacaagggcaaagaggaagagtatgcgccgggtatgaagcctgcagctgccgaaaaccacggaggctgtggtaatgtgcaacccagcgtccgacaagctgccctacagctcaaagctgccttcgatgt---tgtccaagaagacggccccaaaaagcgtgagacaactcccattactccagagatggcgcatggtattcttcgccgcatctccgagcaggacttacgaaacatgggcctcaactcggattatgctcgacctgagtggatgatcgttaccgtccttccagtgcccccgccacccgttcgacctagtatctcgatggatgggacttcaactggaatgcgaaacgaagatgatttgacctacaagcttggtgatattattcgtgccaacggaaacgtcaagcaggccatccgagaaggttctcccgcgcatatcgctagagatttcgaggagttgctccagta Pseudonectria_pachysandricola_AR4592 ggaga-ttgtctgccacaactgcagtaaagtgttggccgataaagttggtctactc------actccatgacgc---tctggctcattggttgctaatctcatgctctcagagtgatcctgaattcgcggctgctatcaatactcgagatcccaaacttcgctttaaccgcgtgtgggaggtttgtaagaagaagcgcaagtgtgagaacgaggacaggaacgaaaagaacaaggaagaagagtatgcccctggcctaaagcccgctcctgttgagaaccacgggggctgcggcaacgttcagcccaacgtacgacaagctgcccttcagctgaaggctgcctttgatgtcgctgctgaagaaggtggccccaagaagcgagagacgactcccatcacccccgagatggcacacagcattttgaagaggatttctgaggaggacatacgacacatgggcctcaactcagattatgctcgtcccgagtggatggtacttaccgttctacctgtaccaccccctcctgtccgccctagtatctcaatggacggaactagtaccggcatgcgaaatgaagacgatttgacctacaagctgggtgatatcattcgcgccaacggaaacgtcaagcaggccattcgcgaaggctcccctcaacatattgcccgagatttcgaggagctgcttcaata Pseudocosmospora_joca_AR4779 -------------------ctgtagcaaagtgctggccgataaagttggtccactc------attccatgaagc-tcttctgcctattggatgctaacatgatgttcccagagcgatcccgaattcgccgccgctattggtactcgtgatcctaagcttcgcttccaccgagtctgggaagtgtgtaagaagaaaagaaagtgcgagaatgaagacaggaacgacaagagcaaggacgacgagtatgcgccaggtacgaaacctgtcgctgtggaaaaccacggtggctgtggcaatgtgcagcccgccgttcgacaagctgccctgcaactcaaagccgcctttgacgt---tgtccaagaagatggccccaagaaacgagagacgacacctattacaccagagatggctcatggcattcttcgccgcatatctgagcaggatatgtgcaatatgggtcttaactctgactacgccagacctgaatggatgattctgaccgttctccccgtccccccgccaccagttcgtcctagtatttctatggacggtacaggaactggcatgagaaacgaagatgatttgacctacaagcttggcgatattattcgtgccaacggaaatgtcaagcaggccattcgcgaaggttcaccagctcatat------------------------------ Cosmospora_viridescens__CBS102433 ggaga-tagtctgccacaactgtagcaaagtgttggccgataaagttggtctactc------attccatgaagc-tttttggcctattggatgctaacctgatactctcagagcgatcccgaattcgccgccgccattggcactcgagatcctaagctccgatttcaccgcgtctgggaagtttgcaagaagaagcgaaagtgcgagaacgaggataggaacgataaaaataaggacgaggagtacgcgccaggcctgaaacctttagccgtggaaaaccacggaggctgcggtaacgtacagcctgccgtccgacaagccgctctccaactcaaagctgcctttgatgt---tgttcaagaagatggccctaaaaagcgagagacaacaccaatcactccggagatggctcacggcattcttcgccgcatttctgaacaggacatacgcaacatgggcctcaactctgactatgctcggcctgagtggatgatccttaccgtcctccccgtacctccgccaccggttcgtcctagtatttctatggacggaactggaactggcatgcggaacgaagacgatttaacttacaagctgggcgatattatccgtgctaacggaaatgttaagcaggcaatccgcgagggctctcctgcgcatatcgcgagagacttcgaggaactgcttcagta Dialonectria_episphaeria_CH1001 ggaga-tagtctgccacaactgtagcaaagtgctggcagataaagttggtctactc------attccatgaagctttttttgcctattggatgctaatttgatactctcagagcgatcccgaattcgcagccgctgtcaatacccgagatcctaagctccgattccaccgagtctgggaagtttgtaagaaaaagcggaagtgcgagaatgaggacaggaacgacaagaacaaagatgaggatttcgcgtctgcatcgaaactc---accgtggaaaaccatggaggctgtggaaatgtgcagcctgctgtccggcaagccgctcttcaactcaaagccgcctttgatgt---tgctcaagatgatggggccaagaaacgagaaacgacaccgattacgccagagatggctcatggcatccttcgccgcattaccgaacaggatctgcgcaacatggggctcaactctgactatgccaggccagagtggatgattctgactgtcctccccgtgcctccgccccccgttcgtccgagtatctccatggacggaaccggaactggcatgaggaatgaagatgatttgacttacaaacttggtgacattattcgtgcaaatggaaacgtcaagcaggccatacgcgaaggctcaccagcacatatcgcaagggacttcgaggagctactccagta Dialonectria_sp_CH1014 ggaga-tagtctgccacaactgtagcaaagtgctggcagataaagttggtctactc------attccatgaagctttttttgcctaatggatgctaatttgatactctcagagcgatcccgaattcgcagccgctgtcaatacccgagatcctaagctccgattccaccgagtctgggaagtttgtaagaagaagcggaagtgcgagaatgaggataggaacgacaagaacaaagacgaggacttcgcgtctgcatcgaaactc---accgtggaaaatcatggaggttgtggaaatgtgcaacctgctgtccgacaagccgctcttcaactcaaagccgcctttgatgt---tgctcaggatgatggggccaagaaacgagaaacgacaccgattacaccagagatggctcatggcatccttcgccgcattaccgaacaggatctgcgcaacatggggctcaactctgactatgccaggccagagtggatgattctgactgtcctccccgtgcctccgccccccgttcgtcccagtatctccatggacgg-accggaactggcatgaggaatgaagatgatttgacttacaaacttggcgacattatacgtgcaaatggaaacgttaagcaggctatacgcgaaggctcaccagcacatatagcaagggactttgaggagctactccagta Pseudocosmospora_eutypae_CH1101 -------------------ctgtagcaaagtgctggccgataaagttggtccactc------attccatgaagc-tgtttggcctattggatgctaatttactactctcagagcgatcccgaattcgccgccgccattggcactcgagatcctaagcttcgattccaccgagtctgggaagtctgcaagaagaagcggaagtgcgagaacgaggacagaaacgacaagaacaaggacgaggagtatgcgccaggcatgaaaccagcagccgtggagaaccatggaggctgtggcaatgtgcagcctgctgtccgacaggccgcccttcaactcaaagccgcctttgatgt---agttcaagaagacggccccaagaagcgagagacgacacctatcacaccagagatggctcatggcattcttcgccgcatttccgagcaggatatgcgaaatatgggcctcaactctgactacgctaggcctgagtggatgatccttactgtcctgcctgtacccccgccaccagttcgtcccagtatttcgatggacggaactggaacaggcatgaggaacgaagatgatttgacctacaagctcggtgacattatccgcgccaatggaaacgtcaagcaggctatccgcgagggctctccagcgcatat------------------------------ Dialonectria_sp_CH1106 -----------tgccacaactgtagcaaagtgttggccgataaagttggtccactc------attccatgaagc-tttttggcctattggatgctaatttgatactctcagagcgatcccgaatttgcaaccgctgtcaacacgcgagatcctaaactcagatttcatcgagtttgggaagtctgcaagaaaaagcggaagtgtgagaatgaggataggagcgagaagaataaagacgaagaattcaaggatatcaagaa------taccgtggacaatcatggaggctgtggtaatgtgcagcctgccgtgcgacaagccgcacttcaactcaaggccgccttcgacgt---tgcacaggacgatggtgccaagaagcgagagacgacgccaatcactccagagatggctcatggtatccttcgtcgcattaccgaacaggatctgcgcaatatgggacttaactctgattatgccaggcctgagtggatgattctaacagttcttcctgtgcctccgcccccagttcgccctagtatttctatggacggaacgggaactggcatgaggaacgaagatgatttgacttacaaactgggcgacattattcgtgcgaacggaaatgtcaagcaagctattcgcgaaggctcacctgcacatatagcaagagacttcgaggaattacttcagta Dialonectria_sp_GJS091197 ggaga-tagtctgccacaactgtagcaaagtgttggccgataaagttggtctactc------attccatgaagc-ttttttgcctattggatgctaatttgatatactcagagcgatcccgaattcgcagccgctgtcaatactcgagatcctaagctccgattccaccgagtctgggaagtttgtaagaaaaagcggaagtgcgagaatgaggataggaacgacaagaacaaagatgaggaattcgcggctgcatcgaaaccc---accgtggaaaatcatggaggttgtggaaatgtgcagcctgccgtccgacaagccgctctccaactcaaagccgcctttgatgt---tgctcaagatgatggggccaagaagcgagagacaacaccgattacaccagagatggcccatggtatccttcgccgcattaccgaacaggatctgcgcaacatggggctcaactctgattatgccaggccagagtggatgattctgactgttctccccgtgcctccgccccccgttcgtcccagcatctccatggacggaactggaaccggtatgaggaatgaagatgatttgacttacaaacttggtgacattatccgtgcaaatggaaacgtcaagcaggctatacgcgaaggctcaccagcgcatatagcaagagacttcgaggagctactccagta Cosmospora_viliuscula_GJS09411 ggaga-tagtctgccacaactgtagcaaagtgttggccgataaagttggtctactc------atgccatgaagc-tttttggcctattggatgctaacctgatactctcagagcgatcctgaattcgcagccgccattaacacgcgagatcctaagctccgattccaccgcgtctgggaagtctgcaagaagaagcggaagtgtgagaacgaagacaggaacgacaaaaacaaggacgaggagtacgcgccaggcatgaagcctgccgcagtggaaaaccatggaggctgtggtaatgtacaaccagctgtccgacaagctgctctccagctcaaagctgcctttgatgt---cgttcaagaagatggacccaaaaagcgagagacaacgccaatcactccggagatggcccacggcattttgcgccgcatttctgaacaagacatacgcaacatgggccttaactctgactatgcccggcctgagtggatgattcttaccgtactccccgtgcccccgccaccggttcgccctagcatttctatggatggtactggaactggcatgcggaacgaagacgatttgacctacaagcttggtgatattatccgtgccaatggaaatgtcaagcaggccatccgcgaaggctctcctgcacatattgcaagagactttgaagaactgctccaata Cosmospora_viliuscula_GJS10247 ggaga-tagtctgccacaactgtagcaaagtgctggccgataaagttggtctactc------atgccatgaagc-tctttggcctactggatgctaacctgataatctcagagcgatcccgaattcgcggccgccattggtactcgagatcctaagctccgattccaccgcgtctgggaagtttgcaagaagaagcgaaagtgtgagaatgaggacaggaacgacaaaaacaaggatgaggagtacgcgccaggcttgaaacccctagcagtggaaaatcatggagggtgcggtaacgtacagcctgccgttcgacaagccgctcttcagctcaaagcagcctttgatgt---tgtccaagaagatggcccgaagaagcgagagacaactcccatcactccagaaatggctcacggtattcttcgccgtatttccgaggaggacatacgcaacatgggtctcaactctgactacgctcgacccgagtggatgattcttaccgtccttcccgtaccaccgccaccggtccgtcctagtatatccatggacggaactggaactggtatgcgaaacgaagacgatttgacctacaagctcggtgatatcattcgtgccaacggaaatgtcaagcaggctattcgtgagggctctcctgcgcacatcgcaagagatttcgaggaactgcttcagta Cosmospora_viliuscula_GJS83197 ggaga-tagtctgccacaactgtagtaaagtgttggtcgataaagttggtctactc------atgccatgaagc---tttggcctgttggatgctaacctgatactctcagagcgatgtcgaattcgcagccgctattggcactcgtgatcctaaactccgattccaccgcgtctgggaagtctgcaagaagaagcggaagtgcgagaacgaggataggaacgacaagaagaaggacgaagagtacgcgccaggcttgaaacctgcagcagtggaaaaccatggaggctgcggtaacgtacagcctgccgttcggcaagcagctcttcagctcaaagccgcctttgacgt---tgttcaagaagatggccccaaaaagcgagagacaacgccaatcacccctgagatggctcacggtattctgcgccgcatttctgaacaggatatccgcaacatgggcctcaactctgactatgcccgccctgagtggatgattcttaccgttcttcccgtacctccgccgccggttcgtcctagtatctctatggatggtactggaactggcatgcggaacgaagacgatttaacctacaagctcggtgatatcatccgtgccaacggaaatgtcaagcaggctatccgtgagggctcacctgcgcatattgcaagagacttcgaggaactgcttcagta Microcera_coccophila_GJS83198 ggaga-ttgtctgccacaactgtagcaaggttttggccgataaagttggtcacctc------actccatgaagc-tttttggcccattggatgctaacctggtattttcagagcgatcccgaattcgctgcggccatcggtacccgagatcctaagcttcgttttaaccgcgtctgggaagtttgcaagaagaagagcaagtgtgagaacgaggacagaaacgacaagagcaaggacgaagagtacgcgccgggtatgaagcctgcagctgccgagaaccacggaggctgcggcaacgtccagcctcacgttcgacaagctgctctgcaactcaaagctgcttttgatgt---tccgcaagaggacggccccaaaaagcgggagacgactccaattaccccagagatggcgcatggcattcttcgccgtatctccgagcaagacttgcgaaacatgggtctcaactcggattacgctcgacctgaatggatgatcattaccgtccttccggtacccccgccacccgttcgacctagtatctcgatggacggaacttcaactggaatgcgaaacgaagacgatttgacctacaagcttggtgatattattcgtgccaacggaaacgtcaagcaggctattcgagaaggttctcccgcgcacattgccagggattttgaagaattgcttcaata Cosmospora_viliuscula_GJS86315 ggaga-tagtctgccacaactgcagcaaagtgttggccgataaagttggtctactc------atgccatgaagc-ttttctgcctattggatgctaacctgatactctcagagcgaccctgattttgcagccgccattaacacccgagatcctaagctccgattccaccgcgtctgggaagtttgcaagaagaagcggaagtgcgagaatgaggacaggaatgacaagaataaggatgaggaatacgcgccaggcatgaaacctgcagtggtggaaaaccatggaggctgcggtaacgtacagccagccgtccgacaagctgctctccagctcaaagccgcctttgatgt---tgttcaagaagatggtcctaaaaagcgagagacgacaccaatcactccggagatggcccacggcattctgcgccgcatttctgaacaagacatacgcaacatgggcctcaactctgactatgcccggcccgagtggatgattcttaccgtgcttcctgtgcccccgccaccggttcgtcctagcatttctatggatggaactggcactggcatgcggaacgaagatgatctaacctacaagcttggagacatcatccgtgccaatggaaacgtcaagcaggctattcgtgaggggtctcctgcgcacattgcaagagactttgaggaactgctccaata Pseudocosmospora_rogersonii_GJS9056 ggaga-tagtctgccacaactgtagcaaagtgttggccgatcaagttggtctactc------attccatgaagc-tgttcggcctattggatgctaacatgttactttcagagtgatcccgaattcgctgccgccatcaacactcgagaccccaaattacgattccaccgagtttgggaagtctgtaaaaagaagcggaagtgtgaaaacgaggatcggaacgacaagaacaaggatgaggagtatgcgccaggtatgaagcccgcagctgtagagaaccatggaggttgtggcaatgtgcagcctgctgtccgtcaagccgctcttcagctcaaggctgccttcgatgt---ggcccaagaagatggtgccaagaagcgagagacgacaccgataacaccggagatggctcatggcatcctgcgtcgcatttctgaacaggatctacgcaatatgggccttaactctgattacgccaggcctgagtggatgattcttaccgttctccccgtacccccgccaccagtacgccccagtatctccatggacggaacaggaacgggtatgcgaaatgaagatgatttgacatacaaacttggcgacatcattcgtgccaatggaaacgtcaagcaggctattcgtgaaggttctccagcgcatattgccagagacttcgaggacctactgcaata Microcera_coccophila_GJS9850 ggaga-ttgtctgccacaactgtagcaaggttttggccgataaagttggtcacctc------actccatgaagc-tttctggcccattggatgctaaccttatgttttcagagcgatcccgaattcgctgcggccatcgctacccgagatcctaagcttcgttttaatcgcgtttgggaagtttgcaagaagaagcgcaagtgtgagaacgaggatagaaacgataagggtaaggatgaagagtatgcgccaggtatgaaacctgccgctgccgaaaaccatgggggctgcggcaacgtccagcccagcgttcgacaagctgctctgcaactcaaagctgccttcgacgt---agtccaagaagatgggcccaagaagcgtgaaacgactcccattactccagagatggcgcatggcattcttcgccgtatctcagagcaggacttgcgaaacatgggtctcaactcggattacgctcgaccggaatggatgatcattaccgtcctaccagtgcccccaccacccgttcgacctagtatctcgatggacggaacttcaactggaatgcgaaacgaagatgatttgacctacaagcttggtgatattattcgtgccaacggaaatgtcaagcaggctattcgagaaggttctcctgcgcatattgccagagatttcgaagaattgcttcaata Cosmospora_flavoviridis_IMI338173 ggaga-tagtctgccacaactgtagtaaagtgttggccgataaagttggtctactc------atgccatgaagc-tttttggcctattggatgctaacctactactctcagagcgatcccgaattcgcagccgcgattggtactcgagatcccaagctccgattccaccgagtctgggaagtctgtaagaagaagcggaagtgtgagaacgaggataggaacgacaagaacaaggatgaagagtatgcgccgggcatgaaacccgcaactgttgaaaaccatggaggctgcggcaacgtgcagcctgctgttcgacaagccgctcttcaactcaaagccgcatttgatgc---tgttcaagaagatggtgccaagaagcgcgagacaacacccatcacacccgagatggctcatggcattcttcgccgcatttcagaacaggatatccgcaacatgggcctcaactccgactacgctcgacccgagtggatgattcttactgtcctccctgttcccccaccaccagttcgtcctagtatttccatggacggaaccggaacgggcatgcgaaacgaagacgatttgacctacaagcttggtgacatcattcgtgctaacggaaatgtcaagcaggctattcgcgaaggctctcctgcacacattgcaagagacttcgaggaactgcttcaata Microcera_coccophila_MF241482 ggaga-ttgtctgccacaactgtagcaaagttttggctgataaagttggtcacctc------actccatgaagc-tttttggcccattggatgctaacctgatgttttcagagcgatcccgaattcgctgcggccatcgctacccgagatcctaagctccgttttaaccgcgtctgggaagtctgcaagaagaagcgcaagtgcgagaacgaggacagaaacgacaagggcaaagaggaagagtatgcgccgggtatgaagcctgcagctgccgaaaaccacggaggctgtggtaacgtgcagcccagcgtccgacaagctgccttacagctcaaagctgccttcgatgt---tgtccaagaagatggccccaaaaagcgtgagacaacccctattactccagagatggcgcatggtattcttcgccgcatctccgagcaggacttacgaaacatgggcctcaactcggattatgctcgacctgagtggatgatcattaccgtccttccagtgcccccgccacctgttcgacctagtatctcgatggatggaacttcaactggaatgcgaaatgaagatgatttgacctacaagcttggtgatattattcgtgccaacggaaacgtcaagcaggccattcgagaaggttctcccgcgcatattgccagagacttcgaggagttgctccagta Cosmospora_obscura_MF241484 ggaga-tagtctgccacaactgtagtaaagtgttggccgataaagttggtctactc------atgccatgaagc-tttttggcctattggatgctaacctactactctcagagcgatcccgaattcgcagccgcgattggtactcgagatcctaaggtccgattccaccgagtctgggaagtctgcaagaagaagcggaagtgtgagaacgaggataggaacgacaagaagaaggatgaagagtatgcgccgggcctgaaacccgcagccgttgaaaaccatggaggctgcggcaacgtgcagcctgctgtccgacaagccgctcttcaactcaaagccgcatttgatgc---tgttcaagaagatggtggcaagaagcgtgagacaacgcccattacacccgagatggctcatggaattcttcgccgcatttcagaacaggatatccgcaacatgggcctcaactctgactacgctcgacctgagtggatgattctgaccgtcctccctgtgcccccaccaccagttcgtcctagtatttccatggacggaaccggaacgggcatgcgaaacgaagatgatttgacctacaagcttggtgacatcattcgtgctaacggaaatgtcaagcaggctattcgcgaaggctctcctgcacacattgcaagagacttcgaggaactgcttcaata Pseudocosmospora_vilior_PC1246 ggaga-tagtctgccacaactgtagcaaagtgttggccgatagagttggtctactc------attccatgaagc-tgtctggcctattggatgctaaccttgtattctcagaccgatcccgaattcgcagccgccgttgccacgcgagatcccaaggttcgattccacagggtttgggaatgctgtaaaaagaggaacaagtgcgacaacacggtcagg---gaaaagggcaaggacgaggagtttgtgacaggcatcaaacttccttccac---agaccatggcggttgtggcaatgtgcaacctgccgttcgacaagctgctcttcaactcaaagccgcccacgaaat---caatcctgaagacggacccaagagacgagagacgacaccaatcacaccggagatggctcacggtattcttcgccgcatctccgagcaggacttgcgcgacatgggcctgaactcggactacgctagacctgagtggatggttcttaccgtccttccggtaccgccgccaccagttcgtcctagtatttccatggatggcaccggaacgggcatgaggaacgaagatgatttgacctacaagctcggtgatatcatccgtgccaacggtaatgtcaagcaggccattcgcgaaggttcgccggcgcacattgccagagatttcgaggagctgctccaata ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 692; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 692; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 692; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1363636623669; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3730339130160656779; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9107460056712794213; mqVersion 274; checksumv 0 2 574965569 null getNumChars 692 numChars 692 getNumTaxa 24 numTaxa 24 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 311380.0 sumSquares -9.666093894623805E21 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 879; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #9107460056712794213 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 812; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;