#NEXUS [written Mon Mar 18 17:43:58 EDT 2013 by Mesquite version 2.74 (build 550) at cesar-herreras-MacBook-Pro.local/10.109.194.193] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=27; TAXLABELS Pseudocosmospora_eutypellae_AR4453 Pseudocosmospora_eutypellae_AR4527 Pseudocosmospora_eutypellae_AR4562 Pseudocosmospora_eutypellae_CH1002 Pseudocosmospora_eutypellae_GJS10248 Pseudocosmospora_eutypellae_GJS9315 Pseudocosmospora_sp_AR4768 Pseudocosmospora_rogersonii_CH1011 Pseudocosmospora_rogersonii_GJS9056 Pseudocosmospora_sp_MAFF241531 Pseudocosmospora_rogersonii_CH1012 Pseudocosmospora_rogersonii_GJS091384 Pseudocosmospora_sp_CH1102 Pseudocosmospora_sp_MF241499 Pseudocosmospora_vilior_AR4771 Pseudocosmospora_sp_GJS96216 Pseudocosmospora_vilior_AR4810 Pseudocosmospora_vilior_PC1246 Pseudocosmospora_eutypae_CH1101 Pseudocosmospora_eutypae_IM73016 Pseudocosmospora_sp_GJS95141 Pseudocosmospora_sp_AR4826 Pseudocosmospora_metajoca_AR4576 Pseudocosmospora_joca_AR4779 Pseudocosmospora_sp_GJS95143 Microcera_larvarum_AR4580 Corallomycetella_repens_AR4547 ; END; BEGIN CHARACTERS; TITLE ITS; DIMENSIONS NCHAR=540; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Pseudocosmospora_eutypellae_AR4453 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_eutypellae_AR4527 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_eutypellae_AR4562 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_eutypellae_CH1002 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_eutypellae_GJS10248 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_eutypellae_GJS9315 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_sp_AR4768 ---caaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_rogersonii_CH1011 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_rogersonii_GJS9056 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_sp_MAFF241531 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_rogersonii_CH1012 -aacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_rogersonii_GJS091384 -aacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_sp_CH1102 ----------tccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_sp_MF241499 taacaaggtctccgttggtgaaccagcggagggatcattatcgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_vilior_AR4771 ---caaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_sp_GJS96216 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_vilior_AR4810 ----------------------ccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_vilior_PC1246 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_eutypae_CH1101 ------------cgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_eutypae_IM73016 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_sp_GJS95141 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-attgttgcttcggcggg-atcg Pseudocosmospora_sp_AR4826 ---------------------------------------atcgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcggg-atcg Pseudocosmospora_metajoca_AR4576 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-cttgttgcttcggcggg-ttcg Pseudocosmospora_joca_AR4779 ---caaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-tttgttgcttcggcggg-atcg Pseudocosmospora_sp_GJS95143 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacct-atcgttgcttcggcgg--accg Microcera_larvarum_AR4580 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacca-atcgttgcttcggcgggtctcg Corallomycetella_repens_AR4547 taacaaggtctccgttggtgaaccagcggagggatcattaccgagtttacaactcccaaacccctgtgaacatacctcttcgttgcctcggcgggactcg Pseudocosmospora_eutypellae_AR4453 ccccggcg-ctctcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_eutypellae_AR4527 ccccggcg-ctctcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_eutypellae_AR4562 ccccggcg-ctctcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_eutypellae_CH1002 ccccggcg-ctctcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_eutypellae_GJS10248 ccccggcg-ctctcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_eutypellae_GJS9315 ccccggcg-ctctcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_sp_AR4768 ccccggcg-ccttcgggcccggatccaggcgcccgccggaggacccaaactcttgtcttca-tgagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_rogersonii_CH1011 ccccggcg-ccttcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_rogersonii_GJS9056 ccccggcg-ccttcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_sp_MAFF241531 ccccggcg-ccttcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_rogersonii_CH1012 ccccggcg-ccttcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_rogersonii_GJS091384 ccccggcg-ccttcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_sp_CH1102 ccccggcg-ccttcgggcccggacccaggcgcccgccggaggacctaaactcttgttttca-taagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_sp_MF241499 ccccggcg-ccctcgggcccggacccaggcgcccgccggaggacccaaactcttgttttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_vilior_AR4771 ccccggcg-ccctcgggcccggacccaggcgcccgccggaggacccaaactcttgtcttca-tgagaatcttctgagtgacacaagcaaat-aaatcaaa Pseudocosmospora_sp_GJS96216 ccccggcg-ccctcgggcccggatccaggcgcccgccggaggacccaaactcttgtcttca-tgagaatcttctgagtgatacaagcaaat-aaattaaa Pseudocosmospora_vilior_AR4810 ccccggcg-ccctcgggcccggacccaggcgcccgccggaggacccaaactcttgtcttca-tgagaatcttctgagtgatacaagcaaat-aaatcaaa Pseudocosmospora_vilior_PC1246 ccccggcg-ccctcgggcccggatccaggcgcccgccggaggacccaaactcttgtcttca-tgagaatcttctgagtgacacaagcaaat-aaatcaaa Pseudocosmospora_eutypae_CH1101 ccccggcg-ccctcgggcccggacccaggcgcccgccggaggatccaaactcttgtctttt-tgagtatcttctgagtaaaacaagcaaat-aaatcaaa Pseudocosmospora_eutypae_IM73016 ccccggcg-ccctcgggcccggacccaggcgcccgccggaggatccaaactcttgtctttt-tgagtatcttctgagtaaaacaagcaaat-aaatcaaa Pseudocosmospora_sp_GJS95141 ccccggcg-ccttcgggcccggacccaggcgcccgccggaggacccaaactcttgtttcca-taagaatcctctgagtgatgcaagcaaat-acatcaaa Pseudocosmospora_sp_AR4826 ccccggcg-ccctcgggcccggacccaggcgcccgccggaggacccaaactcttgtcttca-tgagaatcctctgagtgacacaagcaaat-aaatcaaa Pseudocosmospora_metajoca_AR4576 ccccggcg-ccctcgggcccggacccaggcgcccgccggaggacccaaactcttgtcttca-cgagtatcttctgagtgacacaagcaaat-aaattaaa Pseudocosmospora_joca_AR4779 ccccggtg-ccttcgggcccggacctaggcacccgccggaggacctaaactcttgtcttcc-cgagtatcttctgagtgacacaagcaaat-aaattaaa Pseudocosmospora_sp_GJS95143 ccccggcg-ccttcaggcccggacccaggcgcccgccgggggacccaaactcttgtttctactgagaatcctctgagtgatacaagcaaatcaaatcaaa Microcera_larvarum_AR4580 ccccggcg-ccctcgggcccggactcaggcgcccgccggaggacccaaactcttgtcttta-tgagtatcttctgagtgacacaagtaaat-gaatcaaa Corallomycetella_repens_AR4547 ccccggcgcccctcgggcccggacccaggcgcccgccggaggacccaaactcatgtctcttgcgagtatcttctgagtgacacaagtaaatacaatcaaa Pseudocosmospora_eutypellae_AR4453 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_eutypellae_AR4527 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_eutypellae_AR4562 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_eutypellae_CH1002 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_eutypellae_GJS10248 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_eutypellae_GJS9315 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_AR4768 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_rogersonii_CH1011 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_rogersonii_GJS9056 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_MAFF241531 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_rogersonii_CH1012 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_rogersonii_GJS091384 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_CH1102 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_MF241499 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_vilior_AR4771 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_GJS96216 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_vilior_AR4810 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_vilior_PC1246 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_eutypae_CH1101 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_eutypae_IM73016 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_GJS95141 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_AR4826 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_metajoca_AR4576 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_joca_AR4779 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Pseudocosmospora_sp_GJS95143 actttcaacaacggatctcttggctctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Microcera_larvarum_AR4580 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattccgtgaatcatcgaatcttt Corallomycetella_repens_AR4547 actttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatcttt Pseudocosmospora_eutypellae_AR4453 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_eutypellae_AR4527 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_eutypellae_AR4562 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_eutypellae_CH1002 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_eutypellae_GJS10248 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_eutypellae_GJS9315 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_sp_AR4768 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_rogersonii_CH1011 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_rogersonii_GJS9056 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_sp_MAFF241531 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_rogersonii_CH1012 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_rogersonii_GJS091384 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_sp_CH1102 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_sp_MF241499 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_vilior_AR4771 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_sp_GJS96216 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_vilior_AR4810 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaagccccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_vilior_PC1246 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaagccccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_eutypae_CH1101 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_eutypae_IM73016 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcc- Pseudocosmospora_sp_GJS95141 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaagccccccgggcttggtgttggggctcggccgcc- Pseudocosmospora_sp_AR4826 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgccc Pseudocosmospora_metajoca_AR4576 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcct Pseudocosmospora_joca_AR4779 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggatcggccgcct Pseudocosmospora_sp_GJS95143 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcctggcgttggggatcggccgcc- Microcera_larvarum_AR4580 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcaaccctcaag-cccccgggcttggtgttggggctcggcccgc- Corallomycetella_repens_AR4547 gaacgcacattgcgcccgccagtattctggcgggcatgcctgttcgagcgtcatttcacccctcaag-cccccgggcttggtgttggggatcggcccgc- Pseudocosmospora_eutypellae_AR4453 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_eutypellae_AR4527 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_eutypellae_AR4562 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_eutypellae_CH1002 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_eutypellae_GJS10248 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_eutypellae_GJS9315 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_sp_AR4768 ctc---cggc-gtgccggccccgaaatctagtggcggtctcgctgtagcttcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_rogersonii_CH1011 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_rogersonii_GJS9056 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_sp_MAFF241531 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_rogersonii_CH1012 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_rogersonii_GJS091384 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_sp_CH1102 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcttcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_sp_MF241499 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_vilior_AR4771 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_sp_GJS96216 ccc---cggc-gcgccggccccgaattctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_vilior_AR4810 ctg---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_vilior_PC1246 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_eutypae_CH1101 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacacagcctggccacgc Pseudocosmospora_eutypae_IM73016 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacacagcctggccacgc Pseudocosmospora_sp_GJS95141 ccc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggatcgcagcctggccacgc Pseudocosmospora_sp_AR4826 ccc---cggc-gcgccggccccgaattctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_metajoca_AR4576 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctggccacgc Pseudocosmospora_joca_AR4779 ctc---cggc-gcgccggccccgaaatctagtggcggtctcgctgtagcctcctctgcgtagtagc--acacctcgcaccggaacgcagcctgaccacgc Pseudocosmospora_sp_GJS95143 ctc---tggc-gcgccggccctgaaatctagtggcggtctcgctgtagcctcccctgcgtagtagc--acacctcgcaccggagcgcagcctggccctgc Microcera_larvarum_AR4580 ccctagcggc-gcgccgtccccgaaatctagtggcggtctcgcgatagcctcctctgcgtagtagca-atatctcgcactggaactgagcaaggccacgc Corallomycetella_repens_AR4547 ccctggcggcggcgccggccccgaaatcgagtggcggtctcgctgcagcctcctctgcgtagtagcatacacctcgcaccgggacgcagcgcggccacgc Pseudocosmospora_eutypellae_AR4453 cgttaaaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_eutypellae_AR4527 cgttaaaacccccca------------------------- Pseudocosmospora_eutypellae_AR4562 cgttaaaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_eutypellae_CH1002 cgttaaaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_eutypellae_GJS10248 cgttaaaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_eutypellae_GJS9315 cgttaaaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_sp_AR4768 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_rogersonii_CH1011 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_rogersonii_GJS9056 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_sp_MAFF241531 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_rogersonii_CH1012 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_rogersonii_GJS091384 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_sp_CH1102 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_sp_MF241499 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_vilior_AR4771 cgta-aaaccccccac-ttctcaaggttgacctcggatca Pseudocosmospora_sp_GJS96216 cgtt-aaaccccccac-ttctg------------------ Pseudocosmospora_vilior_AR4810 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_vilior_PC1246 cgtt-aaaccccccac-ttctcaaggttgacctcggatca Pseudocosmospora_eutypae_CH1101 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_eutypae_IM73016 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_sp_GJS95141 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_sp_AR4826 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_metajoca_AR4576 cgta-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_joca_AR4779 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Pseudocosmospora_sp_GJS95143 cgta-aaaccccccac-ttctgaaggttgacctcggatca Microcera_larvarum_AR4580 cgtt-aaaccccccac-ttctgaaggttgacctcggatca Corallomycetella_repens_AR4547 cgtg-aaacccccaactttctcaaggttgacctcgaatca ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 540; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 540; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 540; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1363643038294; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5780167677236680365; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8464377575249035594; mqVersion 274; checksumv 0 2 2008642254 null getNumChars 540 numChars 540 getNumTaxa 27 numTaxa 27 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 273494.0 sumSquares -5.663150430628832E21 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8464377575249035594 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;