#NEXUS [written Mon Mar 18 17:44:59 EDT 2013 by Mesquite version 2.74 (build 550) at cesar-herreras-MacBook-Pro.local/10.109.194.193] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=27; TAXLABELS Pseudocosmospora_eutypellae_AR4453 Pseudocosmospora_eutypellae_AR4527 Pseudocosmospora_eutypellae_AR4562 Pseudocosmospora_eutypellae_CH1002 Pseudocosmospora_eutypellae_GJS10248 Pseudocosmospora_eutypellae_GJS9315 Pseudocosmospora_sp_AR4768 Pseudocosmospora_rogersonii_CH1011 Pseudocosmospora_rogersonii_GJS9056 Pseudocosmospora_sp_MAFF241531 Pseudocosmospora_rogersonii_CH1012 Pseudocosmospora_rogersonii_GJS091384 Pseudocosmospora_sp_CH1102 Pseudocosmospora_sp_MF241499 Pseudocosmospora_vilior_AR4771 Pseudocosmospora_sp_GJS96216 Pseudocosmospora_vilior_AR4810 Pseudocosmospora_vilior_PC1246 Pseudocosmospora_eutypae_CH1101 Pseudocosmospora_eutypae_IM73016 Pseudocosmospora_sp_GJS95141 Pseudocosmospora_sp_AR4826 Pseudocosmospora_metajoca_AR4576 Pseudocosmospora_joca_AR4779 Pseudocosmospora_sp_GJS95143 Microcera_larvarum_AR4580 Corallomycetella_repens_AR4547 ; END; BEGIN CHARACTERS; TITLE LSU; DIMENSIONS NCHAR=783; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Pseudocosmospora_eutypellae_AR4453 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypellae_AR4527 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypellae_AR4562 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypellae_CH1002 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypellae_GJS10248 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypellae_GJS9315 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_AR4768 gcggcaacagctcaaatttgaaatctggcccttgggtccgagttgtaatttgtagaggatgcttttggtacggtgccttccgagttccctggaacgggac Pseudocosmospora_rogersonii_CH1011 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_rogersonii_GJS9056 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_MAFF241531 gcggcaacagctcaaatttgaaatctggccctcgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_rogersonii_CH1012 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_rogersonii_GJS091384 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_CH1102 gcggcaacagctcaaatttgaaatctggcccttgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_MF241499 gcggcaacagctcaaatttgaaatctggcccttgggtccgaattgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_vilior_AR4771 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_GJS96216 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtaccacccgagttccctggaacgggac Pseudocosmospora_vilior_AR4810 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_vilior_PC1246 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypae_CH1101 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypae_IM73016 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_GJS95141 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_AR4826 gcggcaacagctcaaatttgaaatctggcccttgggtccgagttgtaatttgtagaggatgcttttggtgcggtaccacccgagttccctggaacgggac Pseudocosmospora_metajoca_AR4576 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Pseudocosmospora_joca_AR4779 gcggcaacagctcaaatttgaaatctggcccccgggtccgagttgtaatttgtagaggatgcttttggtacggtgccttccgagttccctggaacgggac Pseudocosmospora_sp_GJS95143 gcggcaacagctcaaatttgaaatctggccctcgggtccgagttgtaatttgtagaggatgcttttggtgcggtgccttccgagttccctggaacgggac Microcera_larvarum_AR4580 gcggcaacagctcaaatttgaaatctggcccttgggtccgagttgtaatttgtagaggatgcttttggtgcggtaccttccgagttccctggaacgggac Corallomycetella_repens_AR4547 -cggcaacagctcaaatttgaaatctggcccccgggtccgagttgtaatttgtagaggatgcttttggcgcggtgccttccgagttccctggaacgggac Pseudocosmospora_eutypellae_AR4453 gccatagagggtgagagccccgtctggttggacgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypellae_AR4527 gccatagagggtgagagccccgtctggttggacgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypellae_AR4562 gccatagagggtgagagccccgtctggttggacgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypellae_CH1002 gccatagagggtgagagccccgtctggttggacgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypellae_GJS10248 gccatagagggtgagagccccgtctggttggacgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypellae_GJS9315 gccatagagggtgagagccccgtctggttggacgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_AR4768 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_rogersonii_CH1011 gccatagagggtgagagccccgtctggttggacaccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_rogersonii_GJS9056 gccatagagggtgagagccccgtctggttggacaccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_MAFF241531 gccatagagggtgagagccccgtctggttggacaccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_rogersonii_CH1012 gccatagagggtgagagccccgtctggttggacaccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_rogersonii_GJS091384 gccatagagggtgagagccccgtctggttggacaccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_CH1102 gccatagagggtgagagccccgtctggttggacacctaacctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_MF241499 gccatagagggtgagagccccgtctggttggacgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_vilior_AR4771 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_GJS96216 gccatagagggtgagagccccgtctggttggatgccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_vilior_AR4810 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_vilior_PC1246 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypae_CH1101 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypae_IM73016 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_GJS95141 gccatagagggtgagagccccgtctggttggacacctaacctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_AR4826 gccatagagggtgagagccccgtctggttggatgccaaacctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_metajoca_AR4576 gccatagagggtgagagccccgtctggtcggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_joca_AR4779 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_sp_GJS95143 gccatagagggtgagagccccgtctggtcggacacctatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Microcera_larvarum_AR4580 gccatagagggtgagagccccgtctggtcggataccaatcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Corallomycetella_repens_AR4547 gccatagagggtgagagccccgtctggttggacaccaagcctctgtaaagctccttcgacgagtcgagtagtttgggaatgctgctctaaatgggaggta Pseudocosmospora_eutypellae_AR4453 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_eutypellae_AR4527 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_eutypellae_AR4562 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_eutypellae_CH1002 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_eutypellae_GJS10248 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_eutypellae_GJS9315 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_AR4768 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_rogersonii_CH1011 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_rogersonii_GJS9056 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_MAFF241531 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_rogersonii_CH1012 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_rogersonii_GJS091384 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_CH1102 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_MF241499 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_vilior_AR4771 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_GJS96216 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_vilior_AR4810 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_vilior_PC1246 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_eutypae_CH1101 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_eutypae_IM73016 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_GJS95141 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_AR4826 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_metajoca_AR4576 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_joca_AR4779 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Pseudocosmospora_sp_GJS95143 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaatagtacgtg Microcera_larvarum_AR4580 tatgtcttctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaacagtacgtg Corallomycetella_repens_AR4547 tatgtcttctaaagctaaataccggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagggttaaacagtacgtg Pseudocosmospora_eutypellae_AR4453 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_eutypellae_AR4527 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_eutypellae_AR4562 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_eutypellae_CH1002 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_eutypellae_GJS10248 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_eutypellae_GJS9315 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_AR4768 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_rogersonii_CH1011 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_rogersonii_GJS9056 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_MAFF241531 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_rogersonii_CH1012 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_rogersonii_GJS091384 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_CH1102 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_MF241499 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_vilior_AR4771 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_GJS96216 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_vilior_AR4810 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_vilior_PC1246 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_eutypae_CH1101 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_eutypae_IM73016 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_GJS95141 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_AR4826 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_metajoca_AR4576 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggctaatcatccagccttctggctggtgcacttgacc-ggctcaggccagcatcagttc Pseudocosmospora_joca_AR4779 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcatccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Pseudocosmospora_sp_GJS95143 aaattgttgaaagggaagcgcttgtgaccagacttgagcccggttaatcacccagccttctggctggtgcacttggcc-ggctcaggccagcatcagttc Microcera_larvarum_AR4580 aaattgttgaaagggaagcgcttgtgaccagacttgggcccggttaatcatccaccgttctcggtggtgcacttggcc-ggcccaggccagcatcagttc Corallomycetella_repens_AR4547 aaattgttgaaagggaagcgcttgtgaccagacatgggcccgttcaatcatccagcgttctcgctggtgcacttggtcgggctcaggccagcatcagttc Pseudocosmospora_eutypellae_AR4453 ggcgcgggggataaagacttcgggaatgtggctcccccgggagtgttatagcccgttgtgcaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypellae_AR4527 ggcgcgggggataaagacttcgggaatgtggctcccccgggagtgttatagcccgttgtgcaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypellae_AR4562 ggcgcgggggataaagacttcgggaatgtggctcccccgggagtgttatagcccgttgtgcaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypellae_CH1002 ggcgcgggggataaagacttcgggaatgtggctcccccgggagtgttatagcccgttgtgcaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypellae_GJS10248 ggcgcgggggataaagacttcgggaatgtggctcccccgggagtgttatagcccgttgtgcaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypellae_GJS9315 ggcgcgggggataaagacttcgggaatgtggctcccccgggagtgttatagcccgttgtgcaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_AR4768 ggcgcgggggataaaggcttcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_rogersonii_CH1011 ggcgcgggggataaagacttcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_rogersonii_GJS9056 ggcgcgggggataaagacttcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_MAFF241531 ggcgcgggggataaaggcttcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_rogersonii_CH1012 ggcgcgggggataaagacttcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_rogersonii_GJS091384 ggcgcgggggataaagacttcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_CH1102 ggcgcgggggataaaggcttcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_MF241499 ggcgcgggggataaagacttcgggaatgtggctcccccgggagtgttatagcccgttgtgcaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_vilior_AR4771 ggtgcgggggataaatgccttgggaatgtggctcctccgggagtgttatagcccttggtgcaataccctgcgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_GJS96216 ggcgcgggggataaaggcttcgggaatgtggctcctccgggagtgttatagcccgttgtgtcatgccctgcgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_vilior_AR4810 ggcgcgggggataaatgccttgggaatgtggctcctccgggagtgttatagcccttggtacaataccctgtgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_vilior_PC1246 ggtgcgggggataaatgccttgggaatgtggctcctccgggagtgttatagcccttggtgcaataccctgcgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypae_CH1101 ggcgcgggggataaaggcattgggaatgtggctccctcgggagtgttatagccctttgtgcaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypae_IM73016 ggcgcgggggataaaggcattgggaatgtggctccctcgggagtgttatagccctttgtgcaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_GJS95141 ggcgcgggggataaaggcttcgggaatgtggctcctccgggagtgttatagcccgctgcgcaataccctgtaccggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_AR4826 ggcgcgggggataaaggcttcgggaatgtggctcctccgggagtgttatagcccgttgcgtcatgccctgcgctggactgaggttcgcgcatctgcaagg Pseudocosmospora_metajoca_AR4576 ggcgcgggggataaaggcttcgggaatgtggctcctccgggagtgttatagcccgtcgtgcaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_joca_AR4779 ggcgcgggggataaaggcatcgggaatgtggctcctccgggagtgttatagcccgttgtgtaataccctgtactggactgaggttcgcgcatctgcaagg Pseudocosmospora_sp_GJS95143 ggcgcgggggataaaggcggcgggaatgtggctcccccgggagtgttatagcccgccgcgcaataccctgcgctggactgaggttcgcgcatctgcaagg Microcera_larvarum_AR4580 ggcgtgggggataaaggcggcgggaatgtggctcctc--ggagtgttatagcccaccgtgtaataccctgtgctggactgaggttcgcgcatctgcaagg Corallomycetella_repens_AR4547 ggcgcgggggataaaggcttcgggcatgtggctcccccgggagtgttatagcccgtcgcgcaataccctgcgccggactgaggttcgcgcatctgcaagg Pseudocosmospora_eutypellae_AR4453 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypellae_AR4527 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypellae_AR4562 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypellae_CH1002 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypellae_GJS10248 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypellae_GJS9315 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_AR4768 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_rogersonii_CH1011 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_rogersonii_GJS9056 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_MAFF241531 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_rogersonii_CH1012 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_rogersonii_GJS091384 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_CH1102 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_MF241499 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_vilior_AR4771 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_GJS96216 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_vilior_AR4810 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_vilior_PC1246 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypae_CH1101 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypae_IM73016 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_GJS95141 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_AR4826 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_metajoca_AR4576 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_joca_AR4779 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_sp_GJS95143 atgctggcgtaatggttatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Microcera_larvarum_AR4580 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Corallomycetella_repens_AR4547 atgctggcgtaatggtcatcagcgacccgtcttgaaacacggaccaaggagtcgtcttcgtatgcgagtgttcgggtgtcaaacccctacgcgtaatgaa Pseudocosmospora_eutypellae_AR4453 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_eutypellae_AR4527 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_eutypellae_AR4562 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_eutypellae_CH1002 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_eutypellae_GJS10248 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_eutypellae_GJS9315 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_sp_AR4768 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggacggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_rogersonii_CH1011 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_rogersonii_GJS9056 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_sp_MAFF241531 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_rogersonii_CH1012 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_rogersonii_GJS091384 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_sp_CH1102 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_sp_MF241499 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_vilior_AR4771 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_sp_GJS96216 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_vilior_AR4810 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_vilior_PC1246 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_eutypae_CH1101 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_eutypae_IM73016 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_sp_GJS95141 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Pseudocosmospora_sp_AR4826 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_metajoca_AR4576 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_joca_AR4779 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_sp_GJS95143 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Microcera_larvarum_AR4580 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggagccggacccgaaagaaggtga Corallomycetella_repens_AR4547 agtgaacgcaggtgagagcttcggcgcatcatcgaccgatcctgatgttctcggatggatttgagtaagagcatacggggccggacccgaaagaaggtga Pseudocosmospora_eutypellae_AR4453 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_eutypellae_AR4527 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcgg----------------------------- Pseudocosmospora_eutypellae_AR4562 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcgg----------------------------- Pseudocosmospora_eutypellae_CH1002 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_eutypellae_GJS10248 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_eutypellae_GJS9315 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_sp_AR4768 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_rogersonii_CH1011 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_rogersonii_GJS9056 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcgg----------------------------- Pseudocosmospora_sp_MAFF241531 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_rogersonii_CH1012 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_rogersonii_GJS091384 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_sp_CH1102 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_sp_MF241499 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_vilior_AR4771 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_sp_GJS96216 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_vilior_AR4810 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_vilior_PC1246 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcgg-tctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_eutypae_CH1101 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_eutypae_IM73016 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_sp_GJS95141 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_sp_AR4826 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_metajoca_AR4576 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_joca_AR4779 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Pseudocosmospora_sp_GJS95143 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Microcera_larvarum_AR4580 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat Corallomycetella_repens_AR4547 actatgcctgtatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatat ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 783; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 783; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 783; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1363643099264; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5135175279543365123; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6996069238500968376; mqVersion 274; checksumv 0 2 204376802 null getNumChars 783 numChars 783 getNumTaxa 27 numTaxa 27 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 434241.0 sumSquares -2.562944504741021E22 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6996069238500968376 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;