#NEXUS [written Sat Mar 30 01:21:31 CET 2013 by Mesquite version 2.75 (build 566) at em11-casa.local/192.168.1.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=10; TAXLABELS 'Bos taurus' 'Canis familiaris' 'Equus caballus' 'Felis catus' 'Pteropus vampyrus' 'Tursiops truncatus' 'Sus scrofa' 'Galemys pyrenaicus IBEC421' 'Desmana moschata IBEC3164' 'Talpa occidentalis IBEC687' ; END; BEGIN CHARACTERS; TITLE 'Intron ACOX2-3'; LINK TAXA = Taxa; DIMENSIONS NCHAR=411; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' gtgagcaggggctgctgcatgcagcgtacaggtaatgccctgctcagctccagagggcccatttccatctcagtcgtcacaggctgatata----ctagc 'Canis familiaris' gtgagccagggcttctgcctgcagagttcaggtggt-----gcacagttccggagcgtc--------------------agagactgtgta-tttcaatg 'Equus caballus' gtgagccagggctgtggcatgcagggtacaggtagcacactgcacagtcccagagggcccgtccacttctcgggagtcatagattggtgtgtttaagatg 'Felis catus' gtgagccagggctcctg-acgccgtgtgcaggttgt-----gcaaggttccggagagcccattcacatctcagtggtcagatatgtacaga--------- 'Pteropus vampyrus' gtgagccagcgctgctgcatacagcgtaca----atgtcctgcacagttccagagggcccgttcttgtctcagtagtcatagacttgtatatttaatatg 'Tursiops truncatus' gtgagccagggct-ctgggtgcagtgtacaggt-gtgcacggcacagttccagagggcccattcacatctcactagtcataaatttatatatttaatatg 'Sus scrofa' gtgagcaggggctgctgcaagtagtgtacaggttgtgtactacacaactccacagggcccattcatatcatggcaaccatggatttatacagttaatatg 'Galemys pyrenaicus IBEC421' gtgagccaaggctgctgcaggcagtgagcg---------cggcacagttccagagggtccacagacaacttggtagtcacagatttgtttattgaatctg 'Desmana moschata IBEC3164' gtgagccaagg-----gcaggcagtgagcg---------cggcacagttctgaaaggtccacagacaacttggtagccacagatttgtttatttaatctg 'Talpa occidentalis IBEC687' gtaagtgagggctgctgcaggaaatgtaca---------ccgctccatttcagagggcccacagacatctctgtagtcacgggtttgtctatttaaactg 'Bos taurus' aagatgtcacagcaggtggcagtaaaggtcttaagaggggtgatttttttctaatttacacgaacatagtatgaactggggcacaagtccttcctactgg 'Canis familiaris' caaatgttccagcaggtggcagtaagggtctcgaaggggggttcctttttctaattgatacaaacaccgtatgagccagggggcaagttgtcccttctgg 'Equus caballus' aaaacgttacagcaggtggcggtaggggtgttgaggaggggtgcctttttctaatctacatgaacattatggg---tagggggcaagtcaccccttctgg 'Felis catus' ----------atgagctagcaat---------------------------------------------------------gggcaagtcattccttctgg 'Pteropus vampyrus' aaaacgttacagcag------------------------------------------------------------------------------------- 'Tursiops truncatus' aagatgttacagcaggtggcagtaaaggtcttgaggaggggtgattttttctaatttacacgaacatagtatgatctaggaggcaaggtgttccttctgg 'Sus scrofa' aagatgttacagcaggtggcagtaagggttatgaggaggggggtgtttttctaatttataggaatatagtatgagccggggggcaagtcaatggt----- 'Galemys pyrenaicus IBEC421' aaaatgtt-cagcaggtgatagtaagggtatggaggagggatgcccttttctagtttctataaacagagtgaggatcagcaggcaagt------------ 'Desmana moschata IBEC3164' aaaatgtt-cagcaggtgatagtaagggtatggaggagggatgcctttttctagtttctataaacagagtgaggatcagcaggcaagt------------ 'Talpa occidentalis IBEC687' aaaatatt-cagcaggtaatagtaagggtatggaggagggatgcccttttctagtttatataaacagagtgaggaccaggaggcaagt------------ 'Bos taurus' aaatgtcagccaccacccgctatcgtgggctggccatgtgtcc-ccgcagagcccaccagtgaagggagagacatgccgggaaactggagtgggagtgtg 'Canis familiaris' aaatgacagcaggcatcccttgtcacgggctggccatgtgggc-----acagcccacgggtgaaatcctggaaatgcctgtgagtatagctgcgagct-- 'Equus caballus' aaatgtcagcgaccatcccttgtcatgagctggctatgtgtgccccacacagcccacagct-------------------------------ggagctac 'Felis catus' aaatgtcagcgaccatcccttgtcatgggctggccatgtgtccccctcacagcccacgggtgaaagaggagagatgcctgagggtacagcggggagctcc 'Pteropus vampyrus' -------------------------------------------------------------------------------gtaagtccagctgagagata- 'Tursiops truncatus' aaatgtcagccaccattccctatcatgggctggccatgtgtcccccaaagagcccaccggtgaaaggagagaaatgcctgtgagtacagctgggagctac 'Sus scrofa' --------ggggcgatcccttgtcataggttggccatgtgtcccccccacagcccaccagtgaaaggaaagaaacgcctgtgacgatagcagggagctac 'Galemys pyrenaicus IBEC421' -----tcagcaaccgtcccttgtcaggggctggtcacg-gtcccacacgcagaccacaggtga----cgcgacctgccggtgagtacagctggaggcggc 'Desmana moschata IBEC3164' -----tcagcaaccgtcccttgtcaggggctggtcacg-gtcccacacacagaccacaggtga----agcgatctgccggtgagtacagccggaggcggc 'Talpa occidentalis IBEC687' -----tcagcaactgtcccttgtcagaggctggtcatgggtcccgcacagagagcacaagcgaacagagagacatgcctgtgagaacagctggcatcggt 'Bos taurus' ccccactccacact-ggctggtgcctgggagctccagggacacccagacgctgctagcccagc-agactcccgccctggcccaacgtctacctacccgcc 'Canis familiaris' -ccgactccagactgggctggtacctggcagttcccggcccaccaggacgctgctccccaggtgagatccctgtcctgaccccctgtctaactcctctcc 'Equus caballus' cccca-tccacacagggctggtgcctgagagttccaggcctgcgtagacactgctccccaggggagattccc-ctttggcctgacatctaactcccctcc 'Felis catus' ccccactccagactaggcaggtgcctggcagctccaggcccaccaggacactcctccccaggtgagatgcctaccctggccccatgtctaacttccctcc 'Pteropus vampyrus' -cgggctgcatacaaggctggtgcctaagagttccaggct--gctagacactgctccccaggtgggattcgcaccccagcaccatgtctaattctgcttc 'Tursiops truncatus' cccgactccatactgcactgacgactgggggctccaggccgacctagacactgcgcccccggtgagattccaaccatggcccaatgtctaacccccctcc 'Sus scrofa' ccctactccacactgggctggtgcctgggagccccgggctcactgagacactgctccccccatgagattcccaccctggcccaacctctaactcccatcc 'Galemys pyrenaicus IBEC421' ccccagtccatactgggct-gtgcccgagagttccaggcccacctagaagtggctccccaagtgag--tccctccctgtcccaatgtctaactcccctcc 'Desmana moschata IBEC3164' ccccagtccatacttggct-gtgcccgagagttccaggcccacctagaagtgcctcctcaagtgagattccctccctgtcccaatgtctaactcccctcc 'Talpa occidentalis IBEC687' ccccattccatactgggctagtgccc-agagttccaggcccacctagaagcaactccccaggtgagattccttcctgttcccaatgtctaactcccctcc 'Bos taurus' ttgattcccag 'Canis familiaris' ttgattcccag 'Equus caballus' ttgattccaag 'Felis catus' ttgattccaag 'Pteropus vampyrus' tggattccaag 'Tursiops truncatus' ttgatgcccag 'Sus scrofa' ttgattcccag 'Galemys pyrenaicus IBEC421' ttgtttccaag 'Desmana moschata IBEC3164' ttgtttccaag 'Talpa occidentalis IBEC687' ttatttccaag ; END; BEGIN CHARACTERS; TITLE 'Intron ACPT-4'; LINK TAXA = Taxa; DIMENSIONS NCHAR=245; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' gtcaggggggggcgggagggatggagagaggga-----ctcagatggagagggccggctcagagaccaggctgacccgatggggggctccgcaaggaagc 'Canis familiaris' gtcagggggggggtgggaggcttgagggggacagagccccgaggtgggggaagccgactgaga---------------------------gcaaatgaga 'Equus caballus' ---------------------------------------------------------------------------------------------------- 'Felis catus' --------ggcgtgggagggatggagagagaca--tccctgggctggagggagccggctgggagaggcagtttggccgctgagcggctccgcagtgagcc 'Pteropus vampyrus' gtcgagggagggagtgaggggtggagagaggcagaggcccgg---ggagggtgccggctgggaggtgacgctgggccgctgagcggctccgcagcaagg- 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' gtcagggggaggtgggagggatggagggagacagggaccagagacggagagggccggctgagagaggaggctgggccgatgggtggttccacacccagac 'Galemys pyrenaicus IBEC421' gtcagggggggcggcagggcgcggg-ggagacagaggcctcagacggggccagcaagcagggagaggcgactgggtctctgggtggctccgcggggagaa 'Desmana moschata IBEC3164' gtcagggggggcggcagggcgcgggcggagacagaggcctccgatggggccagccggcagagagaggcgactgggccgctgggcggctccgcggggagaa 'Talpa occidentalis IBEC687' gtcagcga--------gtgggaggggctggacagaggctccagacggggacagccggcagggagaggcggctgggccgccgggtgcctccgcSgggggga 'Bos taurus' cttccctggggctgagttgtcctgatggggctagcggcccacccctcgctgctcagccatatctgggagaaggactggagacaggaccccagtccgtcgg 'Canis familiaris' ccctccccgcgcagagctatctgggcagggtgagccaccatccccatgctgtacagccaggttgggggggtgtactttgaagagagtcagagcccgtggg 'Equus caballus' ---------------------------------------------------------------------------------------------------- 'Felis catus' cttcccccggggagagctgtctaggtaaggtgacccgccatccccatgcggcgcggccagatctgggaggggtagtttgaagagagccacagccc-tggg 'Pteropus vampyrus' -tcctccgggggccgggctctctggtccggtgagccacc-ctcccgcgctgagcagccagatctcggagag------------gggccacagcgc----- 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' cttccctggggctgagctgtcctgatggggtgagccgcctacccgacactgtgcagccggatctgggagagggaccggagacagggccacagcccgtcgg 'Galemys pyrenaicus IBEC421' ctcccttggggcagagctgtggaggtg-------------cccccaggccgggctgcaagatgtgggagagggggcaaagacaacgtcacagcccg-cgg 'Desmana moschata IBEC3164' cttcctt-gggcagcgctatggaggtgcggtgcgccgctgcccccaggccg-gctgcacggtgtgggagaggcggcaaagacgacgccacagccggtggg 'Talpa occidentalis IBEC687' cttccctggggcagag-tgcccagctggggtgcgccgctgcacccaggctgggcagcaagatgtgcgagaggggccaacgacaatgccacaacccg-ggg 'Bos taurus' gccccggtcacacttttgtcccctctgagcctcagtctcctccag 'Canis familiaris' gtcccagtca---tgctgtcccctctgagcctcagttttccccag 'Equus caballus' --------------------------------------------- 'Felis catus' gtcccagtca---agctgtcctctctgagcctcagtttcccccag 'Pteropus vampyrus' gccctcatgacgctgcggtcccctctgagcctcagtttcccccag 'Sus scrofa' --------------------------------------------- 'Tursiops truncatus' gccccggtcacgctgctgtccccgctgagcctccgttttctccag 'Galemys pyrenaicus IBEC421' gccccaggcgttgtgctgcccactctgagcct---ttccccccag 'Desmana moschata IBEC3164' gccccagtcgctgtgctgtccacgctgagcct---ttccccccag 'Talpa occidentalis IBEC687' gccccagccactctgctgtcctctctgagcct--gtttcccccag ; END; BEGIN CHARACTERS; TITLE 'Intron COPS7A-4'; LINK TAXA = Taxa; DIMENSIONS NCHAR=632; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' gtgagacc---------------------------------ccaggaagggaggggtgctttggaggggaggagggctgggcagggcagaggatgtgagt 'Canis familiaris' gtgagaactgggtcctggccctggctcttctcttctcactc-------------------ttggggggggggaggactgggctgggctgcataggtggaa 'Equus caballus' gtgagaactgtgtcctggcattgtcccttctcttctcaccccaagaaagggagaggcgctttgagt-gggagagggctgggctgcactgcagaggtggaa 'Felis catus' gtgagacccgtgtcctggccctgttccttctcttctcactccaagaaagggggagggcttctgaaggagggctgagctgggctgggctgcagcggtggaa 'Pteropus vampyrus' gtgagacctgtgtcttggcacttttccttctcacctc--------agagggagtggtgctttggag------gggtgtggactgggctgcagaggtggaa 'Sus scrofa' gtgagacctgggtcccggcactgtccctcctctgctggccccaaga-agggagggctgctttggtgggggggggggggtggctgggcggcagaggcaccc 'Tursiops truncatus' ---------------------------------------------------------------------------------------------------- 'Galemys pyrenaicus IBEC421' gtgagacctgtgtcctgccactgtcc-----cttctcaccccaagagagggagaggtgctttggaggtggggggtcccagactgcactgcagaggtggaa 'Desmana moschata IBEC3164' gtgagacctgtgtcctgccactgtcccttctcttctcaccccaagagagggagaggtgctttggagggggggggtcccagactgcactgaggaggtggaa 'Talpa occidentalis IBEC687' gtgagacctgtgtcctgccgctgtcccttctcttctcaccccaagaaagggagaggtgttttggaggcggcgggtgccgggctgcactgcagaggtggaa 'Bos taurus' ttgaaagggaaggaggagggg--------------------taggggccggaggga---gaagcatgcctggagtac----------------------- 'Canis familiaris' tcccagaggaagcagggaagtctcattcctccaaaagcttccgagggcagaagggagcagaggagggcctggagagcaagaggcgtgtccttggcctagt 'Equus caballus' tccaagagggtgaagggaaatctcattcctccaactgcttctgag----gaaaggagtggaggagggcctgcggggtaagaggcgtgcccttggtatagt 'Felis catus' tcccagacgttgaagggaaatctcattcctccaaaggcttctgagggcagaagggagcagaggagggcctgggaggcaggaggcgtgtccttggtacagt 'Pteropus vampyrus' tccaagaggatgaagggaaatctcattcctccagaggcttcagagggaagaagggagtggaggaaggcttgagaggcaaggag-atgtccttggtgtagt 'Sus scrofa' cccaggagcctgaagaggaac------------------------------------------------------------------------------- 'Tursiops truncatus' ---------------------------------------------------------------------------------------------------- 'Galemys pyrenaicus IBEC421' tccaagaggttatagggaaatctccttccttccaaggcttctgagggaagaaaggagctgaagagcgcctggaaggcaagaggcgcattcttggtgtagt 'Desmana moschata IBEC3164' tccaagaggttataggaaaatctccttccttccaaggcttctgagggaagaaaggagttg-agagcgcctggaaggcaagaggcgcattcttggtgtggt 'Talpa occidentalis IBEC687' tccaagaggatatagggaaatcttcttccttccaaggcttctgagggaagaaaggagttgaggagcgcctggaaagcaagaggcgcatttttggtgtagt 'Bos taurus' ------ctggtgtgggagggggtggtaaccttgagtcgtggtcccctggggggtgggtcacccgtctgctctgtgaccagcactgtccacaggccactgg 'Canis familiaris' aactgggggatgggagagggagcagtactctggagaagatcctcactgggatgttggctcactgtctggtctgtaagcaacactg----taggccatggg 'Equus caballus' aactggaggaggaaaaggggaatggtactcttcagaggatcctcactgggaggtcggtcagctgtcaggtctgtaactagcgctgtc-ataggctgtggg 'Felis catus' aagtgggggaagggaggaggagcggta-------------------------------------------ctgtaacctgcactgtctacaggccatggg 'Pteropus vampyrus' aattagaggagggaaaggggagtgttacttttgagagaatcttcaccaggaagttggtcacctgtctggtctataaccagcactgtccataggccctagg 'Sus scrofa' ------tgggaggaggaagggggggtcctcttgaggggatcctccctggggggtggg---------c----tatgaccagcgctgtccacaggccttggg 'Tursiops truncatus' ---------------------------------------------------------------------------------------------------- 'Galemys pyrenaicus IBEC421' catcaagggtgggggaggagagtggcactgctga-aggatcctgagtgggaggtcggtcacctgtctggtctgtaaccagcaccatccatgggccatcga 'Desmana moschata IBEC3164' catcgagggcgggggaggggagtggcactgctga-aggatcctgagtgggaggttggtcacctgtctggtctgtaaccagcaccatccatgggccatcga 'Talpa occidentalis IBEC687' agtcgagggaggggaaggggagtggcagtcctga-aggatcctgagtgggaggctggtcacctgtctggtctgtaaccagcactatccatgggccatcga 'Bos taurus' cctctcccacgtctgtttctttgtgttcttgtgtgacttcggtttgttaacgtgccttccttttttcctctgtaacctttaccctgtttctgttttagct 'Canis familiaris' tctcttccacttctgtttctttatattcttgtctaac--------------atgcttttttgtttttcccttcagcatccgttgttatatttaattaatt 'Equus caballus' ccttttccacttcttct-ctttgtgttcttggctaactttagttcattaatacaccttcttttttttctcttaagtatctaccccattttgtttttagtt 'Felis catus' tcttttccacttccgtttctttctgttcttgtctagcttaaattcattaatataccttttttattttattttttttctccacccagttttgtttttagtt 'Pteropus vampyrus' cctcttccacttctgcttctctgtgtccttgtctaactttagttaattaacacacctt---ttttttctctttagcatctatcccatt---tttttagtt 'Sus scrofa' cctctctcacttctgtttctctgcgttcttatctgacttgggttcgttaacacagcttcttttcttcctctggagcacgtgccccgttgtgggtttagtt 'Tursiops truncatus' ---------------------------------------------------------------------------------------------------- 'Galemys pyrenaicus IBEC421' gcgctttgcttttt----ctatctaacttctgtgtatctttagtcattaatacaccttt--tttcctctccttagcatctaccccatttcattttcagtt 'Desmana moschata IBEC3164' gcgttttgctttttgtctctatctaacttctgtgtatctttagtcattaatacaccttt--tttcctctccttagcatctaccccatttcattttctgtt 'Talpa occidentalis IBEC687' cctttttgctttttctct---tctaactgctgtgtttctttattcattaatacaccttt--ttYcccctccttagcttctacccaattttattttcagtt 'Bos taurus' cctactcccgtcttgcacatcgctccaggcactgccctccctcttcctccctgagtgtccttctg--tcctgggaattttgtcataggcggtctctacgt 'Canis familiaris' tatttttttacattgcacattattccaggcacttccctctcttgtcca--ccaagtgtctttgtggcttctgggacccttgttgcccgtgatctccaggt 'Equus caballus' cctactgccatcttgcacatcactccaggcacttccctctttcatcctacctgagtgtccttccaggtcctgagaatattgttgcaggtggtttccaggt 'Felis catus' cctactcgcatgttacacgttactccaggcacttccctctcgtatctgacctgagtgtccctgtggctcctgggactcttgttgccggtggtttccaggt 'Pteropus vampyrus' cttactcccatcttgcacatcacttcagacacttccctctcttatcctacctgaatgtcgtcctggctcctaggaatattgttgcaggtgatttccaggt 'Sus scrofa' cc----------tcgcccatcactccaggcacttgcctcccttagcctaccggagtgtccttaaggctcccggggatctcgttg-aggtggtttccacgg 'Tursiops truncatus' ---------------------------------------------------------------------------------------------------- 'Galemys pyrenaicus IBEC421' gctactctcatcttgcacatcacttcaagcacttc------ttacccta-ctgagtgtctctctagctcctggga-tattgttgcaggtgg-ctccaggc 'Desmana moschata IBEC3164' gctactctcatcttgcacatcacttcaagcacttc------ttacccta-ctgagtgtctctctagctcctggga-tattgctgca-gcgg-ttccaggc 'Talpa occidentalis IBEC687' cctactcccatcttgcacatcactccaagcacttc----tcttacccta-ctgagtgtc--tctagctcttagga-ttttgttgcaggtggtttccaggt 'Bos taurus' gccctggcga-agcttctagctcagacagggttcccgacaccaggactgaggggtctccctgagtcttttcctcgtgaatctgtggtcaacgccctccca 'Canis familiaris' gccctggctagggttcctgaatcagacaagggtttggatgcagga----------tattccaagtctgttttttgtgagtatgtgatcacagcctccctt 'Equus caballus' gccctggtgagggttcctaattcagacaagggtttggctgccaggatctagggttctttctgattctatttttcatgagcctgtgatcacagccctcttc 'Felis catus' gccctggcgagggttccttactcggacaagggtttggctgcagga----------tatcctgagtctgtttttcatgagtgcgtgatcaccgctgccttc 'Pteropus vampyrus' gccctggcgagggtttctaactca----gggttttggctaccagaatctagagttctttctgagtctgtttttagtgagtcagtgatcacagctctcttc 'Sus scrofa' ggccaggaga-ggcttctaacgcagacagggctccggctgcccgggtctcggggtgtctctgtgtccgt--ctcgggagtctgtgctcgcagccctctgc 'Tursiops truncatus' ---------------------------------------------------------------------------------------------------- 'Galemys pyrenaicus IBEC421' gccgt-gcagggattcctaactcagacaaagctttggatgttaggatctagggtcctttctgagtctgtttcccatgagtct-tggtcacagccctctcc 'Desmana moschata IBEC3164' gccgt-gcagggattcctaactcagacaaggctttggatgttagggtctagggtcctttctgagtctgtgtccggtgagtct-tggtcacagccctctcc 'Talpa occidentalis IBEC687' gccgt-gcaggggttcctaactcagacaaggctttgaatgtcaggatctagggtcctttctgaatctgtttctcgtgagtct-tggtcacagccctcttc 'Bos taurus' cgct--gacctcctccccgccaattcccacag 'Canis familiaris' tgctgatgcttctcctttcttgattcttgcag 'Equus caballus' cgctgacacttctct-ctcctgattcccacag 'Felis catus' cactgacacttcttcgttcctgatcctcgcag 'Pteropus vampyrus' tgctgacacttctct-ctcctgattcccgcag 'Sus scrofa' tg-----accctcctcccgccggttcgtgcag 'Tursiops truncatus' -------------------------------- 'Galemys pyrenaicus IBEC421' agctgacacttctcccttgctgatgccctcag 'Desmana moschata IBEC3164' agctgacacttctcccctgctgatgccctcag 'Talpa occidentalis IBEC687' agctgacacttctcccctgctgatgccctcag ; END; BEGIN CHARACTERS; TITLE 'Intron DHRS3-3'; LINK TAXA = Taxa; DIMENSIONS NCHAR=329; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' ttttcctgagccagagccagcgctgggcatgtcaatgacatggtcttcccttccaggggctataggggagggggagaggctcaccagggcttgggcttgg 'Canis familiaris' ctgtcccgggccccgggcagccccggg-gtgacagtgacctgttccttccctcctggggccgtgggggcgggggagaggctcag---------------- 'Equus caballus' ctgtgctgggccagagccagccctgggcgtgacactgacatgttcct--cccccaggggccctaagggagggggagacacttactaggacttgggctcag 'Felis catus' ccgtcctgggccacagccggccctgggcgtgacagtgacgtgttcctgccctccaggcgctgtaggggggggggagaggctcaccggggcttgggctcag 'Pteropus vampyrus' ctgcccc-----------------------------------------tccccccgggatgcagggggac-gggggaggctcacctgggcttgggctccc 'Sus scrofa' ttgtcctgagccagagccggccctggacgtggcagtgatgtgttccttacttccgggggccgtaa-----ggagtgaggctcaccagggcttgggctcag 'Tursiops truncatus' ttatcctgagactgagccagccctgggcatgtcagtgacatgcttcttccctccaggggctataggggagggggagaggctcgccagggcttgggctcag 'Galemys pyrenaicus IBEC421' ctgtgccggg------------------------------------------------ccgcgggaggag-gggaggggtgcggcacagcttggggcagg 'Desmana moschata IBEC3164' ctgtgccg--------------------------------------------------gccgtgggagag-gggaggggctcagcacgggggggggcagg 'Talpa occidentalis IBEC687' ccRtcccggg------------------------------------------------gccgtaggagaaggagagggcttcagcacagctcgg------ 'Bos taurus' gtctag----------------agggtggctggacaagaagaatgacaggct-ctccaggagtcatctggactttctgaaatgtgggggttggtgccctc 'Canis familiaris' ------ggggatgtccgaggacgaggcgacctg-----------------ccgccccaggagacatccagacgtacagaaatgtggaggtcagcgccctc 'Equus caballus' gccaagggggacgtccaaggacaaagtggccagatgagaggcgtga----ccgccccaggagacgt-gggacttcctgacacgtggagccctgtgccccg 'Felis catus' gccagg-gagatgtccggaggcaaggtggccaggtaagagcaatgaccgcccgcccccggagacatctggacgtacagaaatgcggagctcggtgccctg 'Pteropus vampyrus' gccaggggccatggtccaggacaaggtggctggaaagaggaa---------------------------------------------------------- 'Sus scrofa' gctggggggaatgtcctagggtagggtggctggacaagaggaatgaccggccggctcagaaggcatctggactttctggaatgtggggctcagtgtcctg 'Tursiops truncatus' gccaggggggatgtcctaggatagggtgaccggacaagacgaatgaccggctgccccaggaggcatctggaatttctgaaatgtggggctcagtgccctc 'Galemys pyrenaicus IBEC421' cc----agcggcgtccggcgtccagg-gggtgggcaagaggactggccgccc---------------aggacgctctgaagtgtggcgcccacgccccgc 'Desmana moschata IBEC3164' cc----ggcggtgtccagtgtccagg-gggtgggcaagagggctgaccgccc---------------aagatgctct-aagtgtggcgcccacggcccgc 'Talpa occidentalis IBEC687' ------ggggcagaccagg--------ggctgggcaagaggactga----ccgccccaggaggcacctggacgctctgaagtgtggagcccct------- 'Bos taurus' agcctccacccccccatcgcaggaaaacccagtggctggaggggtgcgtgtcaaggagtctgttctccccaagagggggggctgttggaagctgtgtctg 'Canis familiaris' gg--cgcccccccccgtcctaggagtgccc-gccaccggaggggtgcgtgcccgggggcctgtcctccccagaag--ggggctgccggaggccgcgg-tg 'Equus caballus' gacctgggcccccccgtcccgggaaggctcggtcaccggagtagtgcctgtccagg--tctgtccccgctgcggg--gggggcggcgctgtgggaggctg 'Felis catus' cgccccctcccccccttcccaggagagctcagtc-atggagtggtgcgtgcccgggggtc-gtgctccccagaagagggggctgctggagcccgcggcag 'Pteropus vampyrus' --------------------------------------------------------------------------------------------tgtggctg 'Sus scrofa' ggcccctgcccccccatcccaggaaaacccagtcgctagagtggggcgtgtccaggggtgtgttctccctgagagcgggggctgctggaagctgcggctg 'Tursiops truncatus' ggcccgcacgcccccatcccaggaaagcctggtctctggcatagtgtgtgtacaggggtctgttctccctgagggggggggctgttggaagccgtggctg 'Galemys pyrenaicus IBEC421' agccgtaaccctcccctcccagggcggcccagtgcctgggggcg---gtgtcagcaggcctgtgctccccgaccccg---accgaggggcactggggct- 'Desmana moschata IBEC3164' agccgtaaccctcccctcccagggcgg-ccggtgcctgggggcg---gtgtcaggaggcctgtgctccccgactg-----accgagaggcactggggctg 'Talpa occidentalis IBEC687' ------------cccctcccagaatggcccagtgtctggcg-ggcgcgtgtcaggaggtctgtgctccccaactgcgtggggttctgggggctgcggctg 'Bos taurus' ccgcacactaacctcccatccaccctcag 'Canis familiaris' ccccacactgacctcccgcccgcccccag 'Equus caballus' gccctagctgacctccccgacgccctcag 'Felis catus' ctccacactgacctcccacccaccctcag 'Pteropus vampyrus' ctccacactgacctcccgcccgccctcag 'Sus scrofa' ctgcacgctgacctcccgcccatcctcag 'Tursiops truncatus' ctgcacactgacctcccacccacccttag 'Galemys pyrenaicus IBEC421' cgcctgact-----ccccgccccccgcag 'Desmana moschata IBEC3164' cgcctgact-----ccccgccccccgcag 'Talpa occidentalis IBEC687' ctctgc-ctgactcctcacccacccgcag ; END; BEGIN CHARACTERS; TITLE 'Intron LANCL1-4'; LINK TAXA = Taxa; DIMENSIONS NCHAR=528; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' gtgctttctggcgtctctttacgaccccacttcctatctgcctaaactgttggttt------ccctgttggcacatcccaggtagggaaggtgtatcttg 'Canis familiaris' gtgctttttggagtcttgttaggatcccagttgttatctatgtgaact-ttggttttgtttctccagtgagcataccccaggtagggaaagtgtcagttg 'Equus caballus' gtgctttttggagtctttttaggatcctgcttagtatctgcctaaaccactggttttg-ttctctagttagcacgtcccaggtagggaaggtgta-cttg 'Felis catus' ---------------------------------------------------------------------------------------------------- 'Pteropus vampyrus' gtgcttttttgagtcttttcaggatcccacttactatctgcctagactgttggttttatttctccagttagcacatcccaagtagcgaaggtgtatcttg 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' gtgctttttggagtctttttaggatcccacctactacctgcctaaactattggttttgtttccctggttggcacatcccaggtaggtaaggtgtatctta 'Galemys pyrenaicus IBEC421' gtactttttcaagtctttttaggatcccacttattatttgtctaaactgttggttttgtttctctagttagcacatcccaagtagggaagctgtatctta 'Desmana moschata IBEC3164' gtactttttcaagtctttttaggatcccatttattatttgtctaaactgttgggtttgtttctctagttagcacatcccaagaagggaagctgtatctta 'Talpa occidentalis IBEC687' gtactttttgaagtctttttagaatcccacttattatgtgcctaaactgttgg-tttgtttctctaattagtatatcccaagtagggaaggtgtatcttg 'Bos taurus' acctctgaaggtcaggcatgatcccagcaccaccagcttcacatggggtgctgtgggacacaagggagtgactcagagtaagaagtccag-ctactccat 'Canis familiaris' gcttctgaaggtcaggtgggatcagagagcggacagtgtcacgctgagtgctgttggaaactagggagt-tctaagagtgggaagtccagcccactctgt 'Equus caballus' acctctgaaggtcaggcatgatcagagc-ccagcagcttcacgcccagtgctgtcagaagcgagagagttactgggagtcaggagtgcagtctgctc-gt 'Felis catus' ---------------------------------------------------------------------------------------------------- 'Pteropus vampyrus' acctctgaaggtcaagcatgatcagagaaccaacagctacatgct-----------gaaactagagagtggctcga--taagtagtccagcctgctctgt 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' acctctgaaggtcaggcatgatcagagaaccagcagcttcacttggagtgctgctggaaactagagagtgacttggactaagaagtccag-ctgctccat 'Galemys pyrenaicus IBEC421' acctctgagggtgagac------agagaacctgtaacttcaaactaagtgctgttggaaactaggaagtgactccatgtaagaaaggcagcctgctctat 'Desmana moschata IBEC3164' acctctgagggtgagat--------agaacctgtaacttcaaactaagtgctgttggaaactaggaagtgactccatgtaagaaaggcagcctgctctat 'Talpa occidentalis IBEC687' acctctgaggatcaggc------agagaaccagtaacttcaaaatgagtgctgttggaaactaggaagtgactcagtgtaagaaaggcagcctgctccat 'Bos taurus' ttgagagttcaggggcca-ttcagaggaagataagggccaga---------------------------------------------------------- 'Canis familiaris' t--ggagtgtcgaggcccttc----agaagatgagggccagatttcacctcccaggtgcaggcgtctcctttcgttcctgaaggaattcaagctttcc-t 'Equus caballus' ctgagagtgtggagccct-tcccgaaggagacaagggccggatttcacctcccaggtgctgctgtcttctttggcgcctgaaggaatttatgctttcctt 'Felis catus' ---------------------------------------------------------------------------------------------------- 'Pteropus vampyrus' ttgagagtttagaggccgtttcagaagaaaatgagggtcagattttaccttccaggtgcaggtgtctcttttggtgcctgaagcagtttatgctttcctt 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' ttgagagtttagaggcca-ttcagaggaaaatacgggccagatttcacctccaaggtgcaggtgt-tcctctcgtatctgaaggagctt-tgctttcctt 'Galemys pyrenaicus IBEC421' ttgagaattcagaggcccttttagaagatactgagtgtcagatttcatttcccaggtatagatggcttcttttgtgtctgaagaagcttatgctttcttt 'Desmana moschata IBEC3164' ttgagagttgagaggccctttcagaagatattgagtgtcagatttcatttcccaggtatagatgtcttctttcgtgtctgaaggagcttatgctttcctt 'Talpa occidentalis IBEC687' ttgagagtcgagaggccctttcag-agatattgcaagtcagatttcatttcccagatacagatgtcttcttttgtgcctaaagaagtttatgctttcctt 'Bos taurus' ----------------------------------------------------------------ataatcccatgtgcttctctgagtacagagtcaaac 'Canis familiaris' ggtcaagtgaattcttgtaagctccagtgagagttaaggattgccatcctcttttaggcagaatgcagtcccccctgctt-tctgagcacagaactaaac 'Equus caballus' tgacaagtgaattctt-caaactctaataagagtttaagttcctccacctctttcaggcagaatatagtcacctccgcttctctgagtgcagaattagac 'Felis catus' ---------------------------------------------------------------------------------------------------- 'Pteropus vampyrus' tgacaagtaagttcttgtaagagctagtaagagttcaagatcctccaccctttttagaaagaatacagtcacacctgcttctctgagtgcagaattaaac 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' tgacaggtgaattcttgtgagctgtagtaagagttcaaaatcttccacctcttttaggcagaat--aatcccatgtgcttctctgagtacagaagcaaac 'Galemys pyrenaicus IBEC421' cgactagtgaatttttataggtgctagtaagtgttcaagctctcccaccccttttagacagaatacagtcatgcct-cttctctgagtacagaactaaac 'Desmana moschata IBEC3164' tgacaattgaatttttataggtgctagtaagtgttcaagctctcccaccccttttaggcagaatacagtcatgcct-cttccctgagtac-----taaac 'Talpa occidentalis IBEC687' tgacaggtgaatttttgtaggtgctagtaggtgttcaagatctcccaccccttttaggcaacacacaggcgtgcct--cttcctgagtacagaattaaat 'Bos taurus' tgtgcccattcatggcaggtgatgtctaacttgtcatgttccccagtacctgttagcaaaaa-tcccttgtctccat-----------tctaattctttc 'Canis familiaris' --tgcctgcccatggcagagtgggtctgattcaccatgttctccaacctctcttagcgaaaagttccttatctccgccgggaagattttctgattctctc 'Equus caballus' tgtgcc-atccgtggcagacggcgtctgattcgccatgttctccagtacctcttagcaaaaagttccttacctccactgggaaggctttctaattctcac 'Felis catus' ---------------------------------------------------------------------------------------------------- 'Pteropus vampyrus' tgtgcctttccacggcagatagtgtctaagttgccacattacccagtatatctcagcaaaaatttcttaacctccatcaggagtgttttctaattctctc 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' tgtgcccgtccatggcaggtggtgtcgaatttgccatgttctccagtgcctcttagcaaaaagttccttggcgccat-----------tctcgttctttc 'Galemys pyrenaicus IBEC421' catgcccttccatgg------------------ctacattccccagtacctcttaacaaaacatcccttaccttcatcaggagggtcttctaattccctc 'Desmana moschata IBEC3164' catgcccttccatggcaggagaggtctgctgcaccacgttccccagtacgtcttaacaaaacattccttaccttcatcaggagggtcttctgattccctc 'Talpa occidentalis IBEC687' catgcccttctatggcagatggtatctcattcactacgttccccagtacctcttcacaaaaagttccttatcttcattaggagggtcttctaattccctc 'Bos taurus' cttattctggttgggtttctctctgtag 'Canis familiaris' attatttcaatccgttttctccctgtag 'Equus caballus' gttattttgatcgattttctccctgtag 'Felis catus' ---------------------------- 'Pteropus vampyrus' attattttggttggttttcaccctgtag 'Sus scrofa' ---------------------------- 'Tursiops truncatus' cttattttggtcaattt-ctccctgcag 'Galemys pyrenaicus IBEC421' atgatttttgtcaattttcttcctgtag 'Desmana moschata IBEC3164' atgattttttgtcattttct-cctgtag 'Talpa occidentalis IBEC687' attatttttgccaattttctccctgtag ; END; BEGIN CHARACTERS; TITLE 'Intron PRPF31-3'; LINK TAXA = Taxa; DIMENSIONS NCHAR=590; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' gtgagtaggagggcaagcagaaacagccctgcctggtgtcccccacagcct-ctcccgtccccatttgaggggcgggcaggatccgccaccgtccctgct 'Canis familiaris' gtgagtggcaggaagggcagagatggccctgcctgctgtcccttccactctcctcccatccacaaggagaggacaggcaggacccgttactttccccact 'Equus caballus' gtgagtggaagggcaagcagagatgaccctgcctggtgtccttcacaccctcctcccatccccaaggaagggacaggcaggatccgctgccttccccact 'Felis catus' gtgagtggaagggcgagcagagatggccctgcctggcgtccctcacggtcccctccagtccccaaggagggcagaggcaggatccgtcgccttccccact 'Pteropus vampyrus' gtgagtggaggggcaggcagaggtgaccctacctggtgtccct--------------------gggtgagggacaggcagcatccgccaccctccctgct 'Sus scrofa' gtgagtg--------------------------------------------------------------------------------------------- 'Tursiops truncatus' gtgagtggaagggcaagcagagacagccctgcccggtgtcccccacagcctcctcccatcctcaagggaggggcaggcaggatcagccgtcttccctgct 'Galemys pyrenaicus IBEC421' gtgagtggcggaaggccgcacagccagtctgcctgccggccctcacagccatgtcctgt---------ggggccaggcaaaattc--------------- 'Desmana moschata IBEC3164' gtgagtggcggagg--------gccagcccgcctgcccaccctcacagccatgtcctgt---------gaggccgggcaaaatcc--------------- 'Talpa occidentalis IBEC687' gtgagtggaggagggccgcagagccagcctgcctgctctccctcacagcagactgctgtctcccagg-agggccaggcagaactc--------------- 'Bos taurus' ggccttgcccagggtcttgcccctaagccctattagctcaaacataggttcagctactgaacagaatggtgacatgagaaggaagtttattttcctctca 'Canis familiaris' ggccttccccaagatcctgccccagactcctactagctgtagtccagattcagctgccataacagcagctta-aaaaaaagaaagtgtgcttttctccga 'Equus caballus' gtcctttcccagggtcctgcccccaagccctattagtttgaatccacgttcagctgctgtaacagtggcttaaataagaaggaagtgtattttcctctcg 'Felis catus' ggcctct-ccagggtcctgcccccagactct-ttagttcaaggccaggttcggctgctgtagcagtggcttatttgagaaggaagtgtgttttcctgtga 'Pteropus vampyrus' ggcctttcccagggtcctgcccccaattcctgttagcctgaatccagatttagctgctgcgacagtggcttaaagaacaaagtcatgtatttcactcttc 'Sus scrofa' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' ggcctttcccagggtcctgcccccaagccctatcagctggaatccaggttcagctgctgtaacaagtggttacgtgagaaggaagcatattttcctctca 'Galemys pyrenaicus IBEC421' ggcctttccgggggtgctaccccccagccctgttagctcaggcccaggtgcagctgctggcacagtgactca-gtcaggaggaagtgtgt---tctctcc 'Desmana moschata IBEC3164' ggcctttccgggggtgctacccccgagccctgttagctcaggcccaggtgcagctgctgtgacagtgactcaagtcagaaggaagtgtgt---tctctcc 'Talpa occidentalis IBEC687' ggtctttcttggggtgctgccccaagctcttgttagctctgacccaggtgcaactactgtaaccgtggcttatgtcagaaggaggtgcaggaggctcacc 'Bos taurus' tgggaaagtctggatgaggagc------------------------ccaggctgtctgagtcttactgatctgtcacctgtttcgtggtacaaagtgact 'Canis familiaris' tgtgagaatctggatgaggagtccagccctggag------------tcaggctctttctgtc---ttgacctgccacctgtgtcagggcacaaagtgact 'Equus caballus' tatgaaagcctggatgaggggtccaggcctggtgtagcagcctctgccaggctctttctgtcttgttgatctgccgcctgtttcatggtgcaaggtgact 'Felis catus' tgtgagagtctgggtgaggaccccaggcctaaagtcgcggcatctgtcaggccctttctgtcttgttgatctgccacctgtgtcagggtccaaggtgact 'Pteropus vampyrus' cacacgaac---agttcaggctggtctcctggagtagcagcttctgccaga--ctttctatcttgttgatctgccacc--------------aggtgact 'Sus scrofa' -----------------------------------------------------------------------------ctatttcctggcaccaggtgact 'Tursiops truncatus' tatgaaagtctggatgaggagt------------------------ccaggctctttctgtctcattgatctgccatctgtttcatggtacaaggtgact 'Galemys pyrenaicus IBEC421' tttgaaagtctgggtgagcttcctaggcctgacgtagcagccttagctcggccctct-tgtcttgttg-------------------------------- 'Desmana moschata IBEC3164' tttgaaagtctgggtgagcttcctaggcctgacgtagcagccttggctcggccctct-tgtcttgtcg-------------------------------- 'Talpa occidentalis IBEC687' tgcgcaagtctgggtgagccttccaggcacctaagatcagggcctgtctcacacctcctgtctgggaggaagcaggtgtttatggaggtacaaggttgca 'Bos taurus' acctacctccagccatcacctctacatccccatcagcaaaagagaagaggaggagggcacatttttctttaaaagagtgacctggaagttgcccgtgtga 'Canis familiaris' gtccacctccagtcatcacctccacatccccaccagcagaagggaagaaaaagagggcacagtt--ctttaagggggtgacctggaaattgcatgcatca 'Equus caballus' gccctccaccagccatcacccccacatccccaccagcaaaaggagagaagaggagggcacagttctcttcaagggggtgacgtgagagttgcacatgtca 'Felis catus' gcccacctcca--------------catcccaccagcaaaaggaaggaggaggagggcacagttct-----aaggggtatcctggaaattg--catgtca 'Pteropus vampyrus' gcctacttccagccatcatctccacattcccaccagcaaaaggagagaagaagagggcacaatt--ctttaagggggtgacctggaagtcacacatgtca 'Sus scrofa' gtccgcctcctgctgtcgcctcc-catccccgccagcagag----aggaagggagggctcgctct-ctttgcgggagtgg-ctggaagttgcacatgtgg 'Tursiops truncatus' gcccacctccagccatcacctccacatcctcatcagcaaaaggagagaagaggagggcacatttttctttgagggagtggcctgcaagttgcacatgtga 'Galemys pyrenaicus IBEC421' -------ctcagccactatctgcacgtcctcaccagggaagggaggggagaggagagcaccattctt----gaggggcg-------------acgtatgg 'Desmana moschata IBEC3164' -------ctcagccaccatctgcacgtcctcaccagagatgggaggggagaggagagcaccattctt----aaggggcg-------------acgtacgg 'Talpa occidentalis IBEC687' acctactctcagcgaccgtctcttcactctcaccagcaaaaggagcgaagaggagagcgcagttctctctaaggggctg-------------acatgtgg 'Bos taurus' cttgctctcacgccttatggaccagaactgatctacacggccgcagccagcagtaggggcagc---ctttgtgctgtgtgtctgtgaacccagctgccag 'Canis familiaris' cttcatatgatatcctgtagaccagaactaacttgcagggccacacctggcagcagggg-------gtttttgctgggtacccacgaacccagctaaatt 'Equus caballus' cctcagctcacatcctgtagaccagaaccaactcatgtggcctcatccaggagtaagggcagccagcctcatggcgggtgtccgtgcacccagctaaagc 'Felis catus' cttcagatcacgtgtcgtaaaccagaactaactcacgtggctgcatgcagcaggga----------gtttttgctgggtggccgtgagccccgctaaatt 'Pteropus vampyrus' -------------cttatagaccagaactaactcgtg-------------------agggagccagctttgtgctgggtgtctgcctgaccagctaaagt 'Sus scrofa' catgagctcacatcttgtggaccagcactaagtcccatggctgcatccattaggagggacagcaggctgtgtgctgggtgtccctgagcccagccgcagc 'Tursiops truncatus' cttcagctcacatcttgtagatcagaactaactcccatggctgcatccagccataagggcagccggctttgtgctgtgtgtccgtgagcccagctataat 'Galemys pyrenaicus IBEC421' ctgcagcctacacctcgtccacctgaactcgctcgcgtggctgcatttagcagcaaggatcaccgg---------------cctagtaccc-gccagagt 'Desmana moschata IBEC3164' ctgcagcctacacctcgtccacctgaactcgcttgtgtggctgcatttagcagcaagggtcaccgg---------------cctagtgccc-gccagagt 'Talpa occidentalis IBEC687' cttcagcccacacctcgtgaacctgaactaactggcgtggctgcatttagcagcaagggtcaccagccttatgctggtg--cccagtgcccaactaaagt 'Bos taurus' gaggggctgacgagggcagatgggtgctgggggagcccgcggcatctgcctg-cccctcatcaggctcctgcccgccctgtgcccc-cag 'Canis familiaris' caggggttaagaaagggagatgggtgttgggacagccagtggagtctgcctgcccccttatcagctacctgttctcccta----ccttag 'Equus caballus' tcggtggtggaagggggaaacggctgctggggca------agactctgcctg-cccctcatcagaca-ctcccgtctctgttctcctcag 'Felis catus' cagggcttgaagaggggcagtgagtgttgggacagtcagcggagtccgcctgccccctcatcagacacctcgcctctctgtccacttcag 'Pteropus vampyrus' tcgggttt-agaaggggaactggaggtggggacagccagcagagtctgt----cccctcatcagacacctcccatccctgtctacctcag 'Sus scrofa' tgggggtcaggaaggagaggtggatgctgggagaacccgcggagcctgcgcg-cccctca-cgggcccctcccctccctctccccctcag 'Tursiops truncatus' taggggttgaagaggggaaatgggtactgagagagccagcagagtcttcctg-cccctcattgggctcctctccgccctgtcccccttag 'Galemys pyrenaicus IBEC421' tcg-----gggaaggggcagtgacagcag----------cggagtcggcctgcgccctcatcggaacctcctgtcctct--ccccctcag 'Desmana moschata IBEC3164' tcg-----gggaaggggcagtgacagcag----------ctgagtcggcctgcgccctcatcggaaactcccgatctct--ccccctcag 'Talpa occidentalis IBEC687' tca-----gaaggggggagatgacagcag----------cagagtcgccctgccccctcaccggacacctcccatc-ctgtcctccttag ; END; BEGIN CHARACTERS; TITLE 'Intron ROGDI-7'; LINK TAXA = Taxa; DIMENSIONS NCHAR=331; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' cctcaggcccacccctgctccaggagagg------------------------------cgggagggacacgggtgccagggcgtcctgcaggccccaga 'Canis familiaris' ccttagggcagcccctgctccaggagaggaacttcccactgaggagcccagcttgcccctgggagggacatgggtacgatggggtcctggaaaccccaaa 'Equus caballus' cctgaggccagcccctgctccgagacggg-ggtccccgcactggtgcctggcttgcccctgggagggacacgggtgccaagggctcctggaagccccgag 'Felis catus' ccttagtccagcccctgctccaggagagggaatccccactgaggagcccagcttgcccctgggagggacacgggtgtgaaggggccctggaaaccccaaa 'Pteropus vampyrus' cctcaggccg-----------agaagggg-------------------------tcccctgggaaggacacgggtaccaaggggtcctggaagccccaaa 'Sus scrofa' cctaaggcccgtgcctgctcccagagagttggtccccacagagg-gccctgcttgcccgtgggagggacacgggtgccaag-------ggaagccccaag 'Tursiops truncatus' cctcaggccggcccctgctccaggagaggcggtccccacagaggggcccagctcgcgcccgggagggacacgggtgccaggaggtcctgcaagccccaaa 'Galemys pyrenaicus IBEC421' -------cccagccctgcccc-ggagagcagcccc------gggggtccagcctgcccctagccggggctcgggcaccaagcggtcccaggagtg----- 'Desmana moschata IBEC3164' -------cccagccctgcccc-agagagcagcccc-----ggggggcccagcccgccccgagctggcgca-gggcaccaagcggtcccaggggtg----- 'Talpa occidentalis IBEC687' -------cccagccctgcccc-ggaaagggcatccccagagaagggcccagcttgccccaggcgggggtgggg----------------ggagct----- 'Bos taurus' ttgttgacagttctctgtgcggttttcttggattggtctttggcttccattctgaatccccaaaatacccccaccccgggtcactggtgtccaagcccag 'Canis familiaris' ctgttgtcctaggtctatgcagttctctaggataggtccttggcttccatcttgcatcccccaaagacccttggtctgggtcagtggttcccaagcc--- 'Equus caballus' tcatcctgatgtttatgcacagttttctgggatgggtccttggcttctgtcttgtgtcccccagatgcccctcgtttgggtcagtcgttcccaagcccag 'Felis catus' ctgctgtcctctgtctatgcagttttctgggacaggtccttggtttccaccctgcgtcccccaaatgctcctagtctgcatcagtgcttctcaagcc--- 'Pteropus vampyrus' ttgtcatcatgtctatgcacagttttctgggataagtccttggcttccattctgtgtcccccagatacccctggtctgagtcagtggttcccaagcccag 'Sus scrofa' ttgccggcctgtgtctgcacagttttctggggtgggtccttggcttccattctgcatccccctgatactccccgtctgggtcagtgcttccccagcccag 'Tursiops truncatus' ttgtcgacagtcctatgtgcagttttctgggatgggtccttggcttccattctgcatcccccagatacccctgatctggatcagtgggtcccaaggccag 'Galemys pyrenaicus IBEC421' --------ctgtgtcttcgcggcttccctgggtgggg----------------------cccagttaacgctggtctgggttggtgggtcccctgccctg 'Desmana moschata IBEC3164' --------ctgtgtctttgcggctttccagggtgggg----------------------cccaggtgacgctggtctgggttggtgtgtcccctgccctg 'Talpa occidentalis IBEC687' --------ctaggtctatgcagttttccagggtggggccccggcttccagcttttttgccccaattattcctggtctggcttggtaggtcccctgcccag 'Bos taurus' tggtgcagtaagttacccggagcacctggcaagaatcagaaggccccagtccacgggctggggactgggattccataatggttggagggatgcctgct-g 'Canis familiaris' tggtataggaagctactcggggcacctgggaagagtctggaagctccagtccaggggccggggatggggttccctaggtggtactgggggtgactgcctg 'Equus caballus' cagta----------------------------------------ccaatccatgggatggggactggcgtccccaggtgattctgggggtgcctgcccg 'Felis catus' tggtgcagaaagccacccaggacacctcggaaaagtctagaagccccagtgcctgggttggggaatggggttcccaggtggttctgggagcgcctgcgcg 'Pteropus vampyrus' tggagcaggaagttacctggggcacctggggag--tctggaagccccagtccatagaataggggctgggatcccgaggtggttcttggggtgtctgccca 'Sus scrofa' tggtgcaggaagccaccgggggcacctgggaagagtctggaagcccc-------tgggctggggctgggcttcctagggggttggggggtggcctgcctg 'Tursiops truncatus' tggtgcaggaagctatctgtggtacctgagaagacactggaagccccagtccatgggatggggactgggagtccggggtggttggaggggtgcctgctca 'Galemys pyrenaicus IBEC421' aggtgcatggagctaccaggggcgcctgggca--------aagtctgcagtccctggacaggggctggaacc---ccagggtccggggggtgacggccag 'Desmana moschata IBEC3164' aggcgca-ggagctaccaggggcgcctggca---------aagtctgcagtccctggacaggggctggaacc------------------------ccag 'Talpa occidentalis IBEC687' aggcacatggggctaccaggggctcctgggcag--tatggaagccccagtccctgggacagggactggacac---cccgggctctgggggtgacaaccag 'Bos taurus' gccctcatcccccctggatgcccggccctcc 'Canis familiaris' gccctcatcctgccttgtcccc--------- 'Equus caballus' gccctcatcctg--tgcctgcctggccctcc 'Felis catus' accctcatccgacctgcttgcccggtgctcg 'Pteropus vampyrus' gccctcatcctgcctgcctgcctgcccc--- 'Sus scrofa' gccctcatcccacctgcctgccctccc---- 'Tursiops truncatus' gccctcatcccccttgcctgcccggcccccc 'Galemys pyrenaicus IBEC421' gccctcgtcccacctgcctgcccggcacccc 'Desmana moschata IBEC3164' gccctcg-cccacctgcctgcccggcacccc 'Talpa occidentalis IBEC687' agcctcatcccacctgcctgcccggcatccc ; END; BEGIN CHARACTERS; TITLE 'Intron SMYD4-5'; LINK TAXA = Taxa; DIMENSIONS NCHAR=426; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX 'Bos taurus' gtgagccgtccatcctccccgctgcccac-cttctccagcagaaaaggacggggtgaactcgcatgggcaggccccaaagcaggtgccttcatctgccca 'Canis familiaris' gtgagccctccctcctcattactgtcctcacttctgtggcaggaaaggacagggcagatgagtatgagcaaacccctggacaggtg-------------- 'Equus caballus' gtgagccatccgtcctcactgctgtccactcttctccagcaaaaaaggacagggtgagttagaatgaacagaccactgggcaggtgccttcacctgtcca 'Felis catus' gtgagccctccctcctcgccactgtccacatttctctggcaggaaaggacagggtgaatcagaatgggca-accaatggacaggtg-------------- 'Pteropus vampyrus' gtgagccatccttcctcgctactgccttctcttgtccagcagaaaaggacagggtgaattagaaagagcaaacaaccgggcaggtgctttcacctgtcca 'Tursiops truncatus' gtgagccatccatcctccctcctgtccacctttctcccgcagaaaaggacagggtgaattcgcctgagcaagccacagggcaggtgcc-tcacctgtgca 'Sus scrofa' gtgagccctccgtcctcacgcctgtgccctcttctccagcacgaaaggccaggggggactcacctgagcaagcccctgggcaggtgccctcacctgtcca 'Galemys pyrenaicus IBEC421' gtgagacatccctcctcactactgttctcccttctccaacagaaagggacagagtcgattacaatgagca-accactgggcaggtgccttcgtctgtctg 'Desmana moschata IBEC3164' gtgagacatccctcctcactactgttctcccttctccaacagaaagggacagagtcaattacaatgagca-accactgggcaggtgccttcgtctgtctg 'Talpa occidentalis IBEC687' ---------------------------------------------------------------------------------------------------- 'Bos taurus' gggttgtttcctggtggaggcggcaca----------------gagctcctcactaggccctgttgtgtctacactacggtgtgtctcacggcttgatcc 'Canis familiaris' ----------------aaggcagtgcatacttaggccagaaaaggcctccttccttggccctgttctgtttaaactatccagtatcttcctgctcaaatc 'Equus caballus' agtttgtttcctgggagaagcagtgcctactgaggcaattaaaagtctccatactagaccttattgtgtctaaactatcatgtatcttactgcttaatct 'Felis catus' ----------------aaggcagtgcatacttgggccagaaaaggcctccttccttggccctgttgtgtctaagctatcacgtatctcactgcttaatcc 'Pteropus vampyrus' ggtttgtttcttagaagaggcagtgcacacttaggagggaaaaagccttcttactgggccctgt--tgtctaaactatcatgtatgccactgc------- 'Tursiops truncatus' ggtctgcaacctggcagaggcagtgcatacttatggggaagaaagcctcctcgctaggccctgttgtatctgtgctatcgggtaactccctgcttgatcc 'Sus scrofa' ggtctgtttcctggcagaggcaggacctacttgggagggtgagggcctcctcactaggcct-----cgtctatacgaccgtgcctctcactgctcagttc 'Galemys pyrenaicus IBEC421' ggcttatttgctggaagaggcagtgcatacttaggcaaaaagagccttcttagtagggctttattgtgact----taccatgcatctcactgcttaattc 'Desmana moschata IBEC3164' ggcttatttgctggaagaggcagtgcgtacttaggcaaaaagagccttcttagtagggcactgttgtgact----taccatgaatctcactgcttaattc 'Talpa occidentalis IBEC687' ---------------------------------------------------------------------------------------------------- 'Bos taurus' ctataagcatcctattctgaaaatggactgggaacaacttcttggcttcttttcttcctgtccccatgactgtgaagcctgtttc----tatagttacac 'Canis familiaris' c-ataaacttcctattccaaaaacggactaagaataactttggggttttttttcttcctgtccttgcaactcagaagcttatgtctacgtctattgccac 'Equus caballus' ccataaacttcctgttctgaaaatgggctaggggcaacttttcagcttcttttcttcctgtccccacaacttggaagcttgtttctgtatctagttccac 'Felis catus' c-ataaacttcctctgccaaaaatgggctcagaataactttttgggtttttttcttcctatccttccaacttggaagcttctttctatatctagttccac 'Pteropus vampyrus' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' ctgtaaatgtcctattctgaaaataggccaggaacaacttcttggtttcttttcttcctgtccccgcaacttggaagcctgtttctatatctagttccac 'Sus scrofa' ccataaacgtcctattctcaaaatgggccaggagcagcctcttggcttcttttctccctgtccccacagcgtggaagcctgtttctagatctacttccac 'Galemys pyrenaicus IBEC421' tgataaacttccttttctgaaaatgggctaagaaaaaatttttca----------------ccctgaaacctaaaaatttatttctatatctagttctac 'Desmana moschata IBEC3164' tgataaacttccttttcagaaaatgggctaagaaaaactttttca----------------ccctgaaacttagaaatttatttctatatctagttctac 'Talpa occidentalis IBEC687' ---------------------------------------------------------------------------------------------------- 'Bos taurus' ccgtgtttgagtaaaagacttctcacatgatgtgtgatt-accagaccctccactaagctgaagtcttttagcagtgtttggtgctctctgggtttcaat 'Canis familiaris' aaatgtttgagtaaaagacttgtcacatgatgaagaattg-------cctccgctaagctgaagttttagagtagtgctcgactctctcgtgtcttcagt 'Equus caballus' aaatgtttgagtaaaggacctgtcacatgataagtaattgaccagcccctctgctaagctgaagttctttagtagtgcttgactccttcttgctttaaat 'Felis catus' aaatgtttgagtaaaagacctgtcacatgatgaataattgaccggatcctctgctaagctgaagagtttttttagtgcttgactccctctggccttcact 'Pteropus vampyrus' ---------------------------------------------------------------------------------------------------- 'Tursiops truncatus' aaatgtttgactgaaagccctgtcgcatgatgagtgattgaccagaccctccgctaagctgaagttttttagtagtgcttgatgctctcttgctttaaat 'Sus scrofa' aaatgtttgagttaaagacctgtaacatgataaataattgaccaggccctccactaagctgaagtttttgagcagcgcttgatgctctcttgctttagat 'Galemys pyrenaicus IBEC421' aaatgtttgcag-----aatgttcacatgatgaataattaaacaaccccttggctaatcttcaggtatttagccatgcttga--ctcttttgctttaaat 'Desmana moschata IBEC3164' aaatgtttgcag-----aatgttcacatgatgaataatttaacagtcccttggctaatcttaagttatttagccatgcttga--ctcttttgctttaaat 'Talpa occidentalis IBEC687' ---------------------------------------------------------------------------------------------------- 'Bos taurus' attggccaagcgtggtctttctgcag 'Canis familiaris' attgaccaagtgtggtctctctgcag 'Equus caballus' attggccaggtgtggtctctctgcag 'Felis catus' attggccacatgtggtctctctgcag 'Pteropus vampyrus' -------------gatctcactgcag 'Tursiops truncatus' attggccaagcgtggtgtctctgcag 'Sus scrofa' attggccaaccgtggtctctctgcag 'Galemys pyrenaicus IBEC421' actgaccaagtgtggtcttcctacag 'Desmana moschata IBEC3164' actgaccaagtgtggtcttcctacag 'Talpa occidentalis IBEC687' -------------------------- ; END; BEGIN TREES; TRANSLATE 1 'Bos taurus', 2 'Desmana moschata IBEC3164', 3 'Galemys pyrenaicus IBEC421', 4 'Talpa occidentalis IBEC687', 5 'Canis familiaris', 6 'Equus caballus', 7 'Felis catus', 8 'Pteropus vampyrus', 9 'Sus scrofa', 10 'Tursiops truncatus'; TREE Bayesian_tree_Laurasiatheria = ((8:77.5709725264484,(((1:53.328747113961725,10:53.328747113961725):6.008664408887803,9:59.33741152284953):16.27275580055818,((7:48.33583110444913,5:48.33583110444913):25.81353656466578,6:74.14936766911491):1.4607996542927992):1.9608052030406924):19.06862933612777,((2:13.80948792507455,3:13.80948792507455):35.53215775651879,4:49.34164568159334):47.29795618098283); END;