#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=60; TAXLABELS Terebratalia_transversa_Go_opsin2 Terebratalia_transversa_Go_opsin1 Mus_musculus_RGR Bos_taurus_RGR Homo_sapiens_RGR Terebratalia_transversa_r_opsin Schistosoma_mansoni_opsin Platynereis_dumerilii_r_opsin Mizuhopecten_yessoensis_Gq_rhodopsin Enteroctopus_dofleini_opsin Loligo_forbesii_opsin Alloteuthis_subulata_opsin Sepia_officinalis_opsin Todarodes_pacificus_opsin Xenopus_laevis_melanopsin Mus_musculus_melanopsin Homo_sapiens_melanopsin Limulus_polyphemus_ocellus_opsin Hemigrapsus_sanguineus_Rh1 Mus_musculus_MLT Xenopus_laevis_MLT Homo_sapiens_somatostatin Drosophila_melanogaster_allatostatin Homo_sapiens_NK_1_receptor Drosophila_melanogaster_Tachykinin_like_receptor Terebratalia_transversa_c_opsin Platynereis_dumerilii_c_opsin Homo_sapiens_encephalopsin Mus_musculus_encephalopsin Anopheles_gambiae_GPRop11 Anopheles_gambiae_GPRop12 Takifugu_rubripes_TMT_opsin Branchiostoma_belcheri_opsin5 Branchiostoma_belcheri_opsin4 Ciona_intestinalis_opsin1 Danio_rerio_VAL_opsin Petromyzon_marinus_pineal_opsin Oncorhynchus_nerka_LWS Geotria_australis_LWS Anolis_carolinensis_P_opsin Geotria_australis_SWS Rana_catesbeiana_SWS1 Rattus_norvegicus_blue_cone_opsin Cynops_pyrrhogaster_SWS1 Petromyzon_marinus_RhA Geotria_australis_RhA Latimeria_chalumnae_Rh2 Homo_sapiens_rhodopsin Mus_musculus_rhodopsin Latimeria_chalumnae_Rh1 Geotria_australis_RhB Geotria_australis_SWS2 Xenopus_laevis_green_rod_opsin Gallus_gallus_blue_cone_opsin Branchiostoma_belcheri_Amphiop2 Branchiostoma_belcheri_Amphiop1 Mizuhopecten_yessoensis_Go_rhodopsin Branchiostoma_belcheri_Amphiop3 Mus_musculus_peropsin Homo_sapiens_peropsin ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=536; FORMAT DATATYPE = Protein GAP = - MISSING = X; MATRIX Terebratalia_transversa_Go_opsin2 ---------MEVETCYRI-------------LYIIIG-------LSGTITNAYAI----RMF-WN-SPMKQ-KWYHIL---YFI--CNIGVILPS-FA------SSILLIEG-WWTI--RV-CNLYGVVAHAFGFSS---I---VAVS-----FVT--KV----TLTQSAP------SK--VV-----VLTT-VATCILLAMFPYIGLCRYVPDKHHT-----------NCFIDW--------HSNNT--T--------------CHLLLAVI-GLLFY-LVPCT----GSCLCYTTTI---------------------------------------------TTDG-----------------M---F---THA----KSKLVVSLIAMT------IVCWLPFG-VISLWEI--FAD-----VK-Y-------V---------T-PM---MEATPPI------VAKLGVTLTPLLYVLYWDGKD----------------------------------------------QKNK Terebratalia_transversa_Go_opsin1 ---------MLATTTNHNLTSLSTHLSTHDSLHMLVGGILAALVFVGVTENTTAIYFLHQMK-KN-ARQAR-PFYILL---HAMTACDILVLLTAGMM------SSISGLSR-KWLFGDAG-CKAYAFLSFFFALTNENLI---VGISLYRYIFVC--KP----HYKEFLS------TK--NVYYW--IAMS-MGYSVFWCSLPLLGFSNYELEPIGI-----------VCSANW--------QSNEL--DS--VS-YTCLIMFFCFILQAIILGKLYHEIVNKTKGLFGFAGCNSSII---------------------------------------------TKMK-----------------K---L---EKR----RNWLCLLLVLTF------IITWSPYA-IISM-------------LR-R-------I---------TGPIDKWIHAFPIL------LAKTSPVICPIIY--RFAGHDFNMSMPCSNCCNIHVHCSCLLGQDAETIVDDIAIRNLKFHGILTDHQAVK Mus_musculus_RGR ---------VLA-----------------------VGTVLLMEALSGISLNGLTI----FSF-CK-TPDLR-TPSNLLVLSLAL--ADTGISLNA-LV------AAVSSLLR-RWPHGSEG-CQVHGFQGFATALAS---ICGSAAVAWGRYHHYC--------TRRQLAW------DT--AI---PLVLFV-WMSSAFWASLPLMGWGHYDYEPVGT-----------CCTLDY--------SRGDR--NF--IS-FLFTMAFFNFLVPLFI------------------------TH---------------------------------------------TSYR-----------------F---M---EQK----FSRSGHLPVNTTLPGRMLLLGWGPYA-LLYLYAA--IAD-----VS-F-------I---------S-PK---LQMVPAL------IAKTMPTINAINYAL----HR----------------------------------------------EMVC Bos_taurus_RGR ---------VLA-----------------------VGTVLLVEALSGLSLNILTI----LSF-CK-TPELR-TPSHLLVLSLAL--ADSGISLNA-LV------AATSSLLR-RWPYGSEG-CQAHGFQGFVTALAS---ICSSAAVAWGRYHHFC--------TRSRLDW------NT--AV---SLVFFV-WLSSAFWAALPLLGWGHYDYEPLGT-----------CCTLDY--------SRGDR--NF--TS-FLFTMAFFNFLLPLFI------------------------TV---------------------------------------------VSYR-----------------L---M---EQK----LGKTSRPPVNTVLPARTLLLGWGPYA-LLYLYAT--IAD-----AT-S-------I---------S-PK---LQMVPAL------IAKAVPTVNAMNYAL----GS----------------------------------------------EMVH Homo_sapiens_RGR ---------VLA-----------------------VGMVLLVEALSGLSLNTLTI----FSF-CK-TPELR-TPCHLLVLSLAL--ADSGISLNA-LV------AATSSLLR-RWPYGSDG-CQAHGFQGFVTALAS---ICSSAAIAWGRYHHYC--------TRSQLAW------NS--AV---SLVLFV-WLSSAFWAALPLLGWGHYDYEPLGT-----------CCTLDY--------SKGDR--NF--TS-FLFTMSFFNFAMPLFI------------------------TI---------------------------------------------TSYS-----------------L---M---EQK----LGKSGHLQVNTTLPARTLLLGWGPYA-ILYLYAV--IAD-----VT-S-------I---------S-PK---LQMVPAL------IAKMVPTINAINYAL----GN----------------------------------------------EMVC Terebratalia_transversa_r_opsin HILFGT--YISI-----------------------IGLL-------AVFGNGLIL----GVF-KR-CKALRLRPSSVLTISLLA--SDMAFS-----AVNGFPILTFTSYYK-KWIFGSTG-CQLYAFLGSLFGITS---INTMNLMAIERYLTIK--TN-------LYLMHSGTF-KR--NL---VFVAIA-WLWALLIALMPVLGWGRYVLEGFQT-----------TCSFDY--------LTKSA--NN--LS-YIMFLMILGFCNPLAC------------------------ITTSYAAI-FKKVNSNYKVLT---QA---------A---T------S---NGCGAGLRSGREIEEKAYR---T---ELK----IIKTAFVVTLAF------LLSWLPYT-IVAMLGL--TRY-----DY-L-------I---------S-PY---VSQIPVM------VAKTSAIYNPIIHVF----LY----------------------------------------------PKLR Schistosoma_mansoni_opsin YYLVGI--YIGI-----------------------VGIL-------AVMGNSLVI----TLF-LL-CKQLR-TPPNMLIVSLAI--SDFSFA-----LINGFPLKTIAAFNH-RWGWGKLA-CELYGFAGSIFGFIS---LTTMAFIALDRYLVIV--QP-------FETFSRITY-GK--VI---VMIFIT-WIWSALWSIPPFFGYGSYIPEGFHT-----------SCTFDY--------LSTDL--PN--LI-FNAGLYILGFLCPVFI------------------------IIFSYYQI-VKTVRLNELELM---KK---------T---G------D---K-----------------K---A---DIE----AAKTSIILVLLY------LMSWSPYA-IVCLMTL--IGS-----RD-S-------L---------T-PF---HSELPVL------FAKTSAVYNPIVYAV----KH----------------------------------------------PKFR Platynereis_dumerilii_r_opsin HYAVAA--WMTF-----------------------FGIL-------GVSGNLLVV----WTF-LK-TKSLR-TAPNMLLVNLAI--GDMAFS-----AINGFPLLTISSINK-RWVWGKLW-RELYAFVGGIFGLMS---INTLAWIAIDRFYVIT--NP-------LGAAQTMTK-KR--AF---IILTII-WANASLWALAPFFGWGAYIPEGFQT-----------SCTYDY--------LTQDM--NN--YT-YVLGMYLFGFIFPVAI------------------------IFFCYLGI-VRAIFAHHAEMM---AA---------D---A------D---K-----------------K---S---EIQ----IAKVAAMTIGTF------MLSWTPYA-VVGVFGM--IKP-----HS-E-------M-------FIH-PL---LAEIPVM------MAKASARYNPIIYAL----SH----------------------------------------------PKFR Mizuhopecten_yessoensis_Gq_rhodopsin HYIIGV--YITI-----------------------VGLL-------GIMGNTTVV----YIF-SN-TKSLR-SPSNLFVVNLAV--SDLIFS-----AVNGFPLLTVSSFHQ-KWIFGSLF-CQLYGFVGGVFGLMS---INTLTAISIDRYVVIT--KP-------LQASQTMTR-RK--VH---LMIVIV-WVLSILLSIPPFFGWGAYIPEGFQT-----------SCTFDY--------LTKTA--RT--RT-YIVVLYLFGFLIPLII------------------------IGVCYVLI-IRGVRRHDQKML---TN---------N---K------R---A-----------------R---S---ELR----ISKIAMTVTCLF------IISWSPYA-IIALIAQ--FGP-----AH-W-------I---------T-PL---VSELPMM------LAKSSSMHNPVVYAL----SH----------------------------------------------PKFR Enteroctopus_dofleini_opsin YYSVGI--FIGV-----------------------VGII-------GILGNGVVI----YLF-SK-TKSLQ-TPANMFIINLAM--SDLSFS-----AINGFPLKTISAFMK-KWIFGKVA-CQLYGLLGGIFGFMS---INTMAMISIDRYNVIG--RP-------MAASKKMSH-RR--AF---LMIIFV-WMWSIVWSVGPVFNWGAYVPEGILT-----------SCSFDY--------LSTDP--ST--RS-FILCMYFCGFMLPIII------------------------IAFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------S---A---EMK----LAKISMVIITQF------MLSWSPYA-IIALLAQ--FGP-----AE-W-------V---------T-PY---AAELPVL------FAKASAIHNPIVYSV----SH----------------------------------------------PKFR Loligo_forbesii_opsin YYSLGI--FIAI-----------------------CGII-------GCVGNGVVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPLMTISCFMK-YWVFGNAA-CKVYGLIGGIFGLMS---IMTMTMISIDRYNVIG--RP-------MSASKKMSH-RK--AF---IMIIFV-WIWSTIWAIGPIFGWGAYTLEGVLC-----------NCSFDY--------ITRDT--TT--RS-NILCMYIFAFMCPIVV------------------------IFFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------N---A---EMK----LAKISIVIVTQF------LLSWSPYA-VVALLAQ--FGP-----IE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPMIYSV----SH----------------------------------------------PKFR Alloteuthis_subulata_opsin YYSLGI--FIAI-----------------------CGII-------GCAGNGIVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPMMTISCFLK-HWVFGQAA-CKVYGLIGGIFGLTS---IMTMTMISIDRYNVIR--RP-------MSASKKMSH-RK--AF---IMIVFV-WIWSTIWAIGPIFGWGAYQLEGVLC-----------NCSFDY--------ITRDA--ST--RS-NIVCMYIFAFMFPIVV------------------------IFFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------S---A---EMK----LAKISIVIVTQS------LLSWSPYA-IVALLAQ--FGP-----IE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPMIYSV----SH----------------------------------------------PKFR Sepia_officinalis_opsin YYSLGI--FIGI-----------------------CGII-------GCTGNGIVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPLMTISCFIK-KWVFGMAA-CKVYGFIGGIFGLMS---IMTMSMISIDRYNVIG--RP-------MAASKKMSH-RR--AF---LMIIFV-WMWSTLWSIGPIFGWGAYVLEGVLC-----------NCSFDY--------ITRDS--AT--RS-NIVCMYIFAFCFPILI------------------------IFFCYFNI-VMAVSNHEKEMA---AA---------Q---A------G---A-----------------S---A---EMK----LAKISIVIVTQF------LLSWSPYA-VVALLAQ--FGP-----IE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPLIYSV----SH----------------------------------------------PKFR Todarodes_pacificus_opsin YYSLGI--FIGI-----------------------CGII-------GCGGNGIVI----YLF-TK-TKSLQ-TPANMFIINLAF--SDFTFS-----LVNGFPLMTISCFLK-KWIFGFAA-CKVYGFIGGIFGFMS---IMTMAMISIDRYNVIG--RP-------MAASKKMSH-RR--AF---IMIIFV-WLWSVLWAIGPIFGWGAYTLEGVLC-----------NCSFDY--------ISRDS--TT--RS-NILCMFILGFFGPILI------------------------IFFCYFNI-VMSVSNHEKEMA---AA---------Q---A------G---A-----------------N---A---EMR----LAKISIVIVSQF------LLSWSPYA-VVALLAQ--FGP-----LE-W-------V---------T-PY---AAQLPVM------FAKASAIHNPMIYSV----SH----------------------------------------------PKFR Xenopus_laevis_melanopsin LYTIGS--FILI-----------------------IGSV-------GIIGNMLVL----YAF-YR-NKKLR-TAPNYFIINLAI--SDFLMS-----ATQA-PVCFLSSLHR-EWILGDIG-CNVYAFCGALFGITS---MMTLLAISINRYIVIT--KP-------LQSIQWSSK-KR--TS---QIIVLV-WMYSLMWSLAPLLGWSSYVPEGLRI-----------SCTWDY--------VTSTM--SN--RS-YTMMLCCCVFFIPLIV------------------------ISHCYLFM-FLAIRSTGRNVQ---KL---------S---Q------S---M-----------------K---N---EWK----MAKIAFVIIIVF------VLSWSPYA-CVTLIAW--AGH-----GK-S-------L---------T-PY---SKTVPAV------IAKASAIYNPIIYGI----IH----------------------------------------------PKYR Mus_musculus_melanopsin HYTLGT--VILL-----------------------VGLT-------GMLGNLTVI----YTF-CR-NRGLR-TPANMFIINLAV--SDFLMS-----VTQA-PVFFASSLYK-KWLFGETG-CEFYAFCGAVFGITS---MITLTAIAMDRYLVIT--RP-------LATIGRGSK-RR--TA---LVLLGV-WLYALAWSLPPFFGWSAYVPEGLLT-----------SCSWDY--------MTFTP--QV--RA-YTMLLFCFVFFLPLLI------------------------IIFCYIFI-FRAIRETGRACE---GQ---------W---Q------R---L-----------------Q---S---EWK----MAKVALIVILLF------VLSWAPYS-TVALVAF--AGY-----SH-I-------L---------T-PY---MSSVPAV------IAKASAIHNPIIYAI----TH----------------------------------------------PKYR Homo_sapiens_melanopsin HYTLGT--VILL-----------------------VGLT-------GMLGNLTVI----YTF-CR-SRSLR-TPANMFIINLAV--SDFLMS-----FTQA-PVFFTSSLYK-QWLFGETG-CEFYAFCGALFGISS---MITLTAIALDRYLVIT--RP-------LATFGVASK-RR--AA---FVLLGV-WLYALAWSLPPFFGWSAYVPEGLLT-----------SCSWDY--------MSFTP--AV--RA-YTMLLCCFVFFLPLLI------------------------IIYCYIFI-FRAIRETGRALQ---TQ---------R---Q------R---L-----------------Q---S---ECK----MAKIMLLVILLF------VLSWAPYS-AVALVAF--AGY-----AH-V-------L---------T-PY---MSSVPAV------IAKASAIHNPIIYAI----TH----------------------------------------------PKYR Limulus_polyphemus_ocellus_opsin YSILGV--AMII-----------------------LGII-------CVLGNGMVI----YLM-MT-TKSLR-TPTNLLVVNLAF--SDFCMM-----AFMM-PTMASNCFAE-TWILGPFM-CEVYGMAGSLFGCAS---IWSMVMITLDRYNVIV--RG-------MAAA-PLTH-KK--AT---LLLLFV-WIWSGGWTILPFFGWSRYVPEGNLT-----------SCTVDY--------LTKDW--SS--AS-YVIIYGLAVYFLPLIT------------------------MIYCYFFI-VHAVAEHEKQLR---ED---------Q---Q------K---Q-----------------S---A---ECR----LAKVAMMTVGLW------FMAWTPYL-IIAWAGV--FSS-----GT-R-------L---------T-PL---ATIWGSV------FAKANSCYNPIVYGI----SH----------------------------------------------PRYK Hemigrapsus_sanguineus_Rh1 HYLLGV--VYLF-----------------------LGVI-------SIAGNGLVI----YLY-MK-SQALK-TPANMLIVNLAL--SDLIML-----TTNF-PPFCYNCFSGGRWMFSGTY-CEIYAALGAITGVCS---IWTLCMISFDRYNIIC--NG-------FNGP-KLTQ-GK--AT---FMCGLA-WVISVGWSLPPFFGWGSYTLEGILD-----------SCSYDY--------FTRDM--NT--IT-YNICIFIFDFFLPASV------------------------IVFSYVFI-VKAIFAHEAAMR---AE---------A---E------T---Q-----------------R---A---EIR----IAKTALVNVSLW------FICWTPYA-AITIQGL--LGN-----AE-G-------I---------T-PL---LTTLPAL------LAKSCSCYNPFVYAI----SH----------------------------------------------PKFR Mus_musculus_MLT --FMFC--AMVI-----------------------TVVV-------DLIGNSMVI----LAV-TK-NKKLR-NSGNIFVASLSV--ADMLVA-----IYPY-PLMLYAMSVG-GWDLSQLQ-CQMVGLVTGLSVVGS---IFNITAIAINRYCYIC--HS-------LQYKRIFSL-RN--TC---IYLVVT-WVMTVLAVLPNMY-IGT-----IE----Y--DPRTYTCIFNY------------V--NN--PA-FTVTIVCIHFVLPLII------------------------VGYCYTKIWIKVLAAR----D---PA---------G---QNPDNQFA-------------------------E---VRN----FLTMFVIFLL-F------AVCWCPVN-VLTVLVA--VIP-----KE-MAGKIPNWL------------Y---LAAY--C------IAYFNSCLNAIIYGI----LN----------------------------------------------ESFR Xenopus_laevis_MLT --ALAV--VLIF-----------------------TIVV-------DVLGNILVI----LSV-LR-NKKLQ-NAGNLFVVSLSI--ADLVVA-----VYPY-PVILIAIFQN-GWTLGNIH-CQISGFLMGLSVIGS---VFNITAIAINRYCYIC--HS-------LRYDKLYNQ-RS--TW---CYLGLT-WILTIIAIVPNFF-VGS-----LQ----Y--DPRIFSCTFAQ------------T--VS--SS-YTITVVVVHFIVPLSV------------------------VTFCYLRIWVLVIQVK----H---RV---------R---QDFKQKLT---Q-----------------T---D---LRN----FLTMFVVFVL-F------AVCWAPLN-FIGLAVA--INP-----FH-VAPKIPEWL------------F---VLSY--F------MAYFNSCLNAVIYGV----LN----------------------------------------------QNFR Homo_sapiens_somatostatin --LVPV--LYLL-----------------------VCAA-------GLGGNTLVI----YVV-LR-FAKMK-TVTNIYILNLAV--ADVLY------MLGL-PFLATQNAAS-FWPFGPVL-CRLVMTLDGVNQFTS---VFCLTVMSVDRYLAVV--HP-------LSSARWRRP-RV--AK---LASAAA-WVLSLCMSLPLLV-FAD-----VQ--------EGGT-CNASWPE---PVG----L--WG--AV-FIIYTAVLGFFAPLLV------------------------ICLCYLLIVVKV--RA----AGVRVG---------C---V------R---R-----------------R---S---ERK----VTRMVLVVVLVF------AGCWLPFFTVNIVNLA--VALPQEPASA-G-------L------------Y---FFVV--I------LSYANSCANPVLYGF----LS----------------------------------------------DNFR Drosophila_melanogaster_allatostatin --IVPV--FFGI-----------------------IGFA-------GLLGNGLVI----LVV-VA-NQQMR-STTNLLIINLAV--SDILFV-----IFCV-PFTATDYVLP-EWPFGNVW-CKFVQYMIVVTCHCS---VYTLVLMSFDRFLAVV--HP-------VTSMSLRTE-RN--AT---LAIMCA-WITIVTTAIPVAL-SHS-----VR-IYQYHGNAGTA-CVFSTEE---EI--------WS--LVGFQVSFFLSSYVAPLTL------------------------ICFLYMGMLARLWKSA----PGCKPS---------A---E------S---R-----------------K---G---KRR----VTRMVVVVVLAF------AICWLPIH-VILVLKA--LNL-----YG-G-------S------------H---LSVI--IQIISHVVAYTNSCINPILYAF----LS----------------------------------------------DNFR Homo_sapiens_NK_1_receptor --LWAA--AYTV-----------------------IVVT-------SVVGNVVVM----WII-LA-HKRMR-TVTNYFLVNLAF--AEASMA-----AFNT-VVNFTYAVHN-EWYYGLFY-CKFHNFFPIAAVFAS---IYSMTAVAFDRYMAII--HP-------L---QPRLS-AT--AT---KVVICVIWVLALLLAFPQGY-YST-----TETMP-----SRVV-CMIEWPE--HPNK----I--YE--KV-YHICVTVLIYFLPLLV------------------------IGYAYTVVGITLWASE----I---PGDSSDRY---H---E------Q---V-----------------S---A---KRK----VVKMMIVVVCTF------AICWLPFH-IFFLLPY--INP-----DL-Y-------LKKFIQQV-----Y---LAIM--W------LAMSSTMYNPIIYCC----LN----------------------------------------------DRFR Drosophila_melanogaster_Tachykinin_like_receptor --IWAI--IFGL-----------------------MMFV-------AIAGNGIVL----WIV-TG-HRSMR-TVTNYFLLNLSI--ADLLMS-----SLNC-VFNFIFMLNS-DWPFGSIY-CTINNFVANVTVSTS---VFTLVAISFDRYIAIV--HP-------L---KRRTS-RR--KV---RIILVLIWALSCVLSAPCLL-YSS-----IMTKHYYNGKSRTV-CFMMWPDGRYPTS----M--AD--YA-YNLIILVLTYGIPMIV------------------------MLICYSLMGRVLWGSR----S---IGENTDRQ---M---E------S---M-----------------K---S---KRK----VVRMFIAIVSIF------AICWLPYH-LFFIYAY--HNN-----QV-A-------STKYVQHM-----Y---LGFY--W------LAMSNAMVNPLIYYW----MN----------------------------------------------KRFR Terebratalia_transversa_c_opsin --IIVL--VLFV-----------------------TAIL-------GFFMNGSVL----IIF-YR-KKELR-SPTNMFIISMAF--NDLMMS-----ILGN-PFAAVSNLHH-RWIFGDAA-CVWYGFIMFFLGLNG---IYHLTAIAFDRYIVIA--KP-------LLSS-KITT-RV--AA---LAISVC-WFGAFLWSVFPVFGWSSYVEEGEHS-----------SCSINW--------ISQSI--VD--SS-YIISIFIFCFFLPILL------------------------VIFSYFHVYMTV---R----T---IA---------K---S------NTFTK-----------------KNEAV---ERK----MAKMVIIMITVF------FGSWSPYA-IVSMFVA--FGD-----GS-S-------L---------P-AA---AIAAPAI------IAKSAMIWNPIIYVL----MN----------------------------------------------VQFR Platynereis_dumerilii_c_opsin --CAAY--LFFI------------------------ACL-------GVSLNVLVL----VLF-IK-DRKLR-SPNNFLYVSLAL--GDLLVA-----VFGT-AFKFIITARK-TLLREEDGFCKWYGFITYLGGLAA---LMTLSVIAFVRCLAVL--RL-------GSFT-GLTT-RM--GV---AAMAFI-WIYSLAFTLAPLLGWNHYIPEGLAT-----------WCSIDW--------LSDET--SD--KS-YVFAIFIFCFLVPVLI------------------------IVVSYGLIYDKV---R----K---VA---------K---T------GGSVA-----------------K---A---ERE----VLRMTLLMVSLF------MLAWSPYA-VICMLAS--FGP-----KD-L-------L---------H-PV---ATVIPAM------FAKSSTMYNPLIYVF----MN----------------------------------------------KQFR Homo_sapiens_encephalopsin --LALL--LGSI------------------------GLL-------GVGNNLLVL----VLY-YK-FQRLR-TPTHLLLVNISL--SDLLVS-----LFGV-TFTFVSCLRN-GWVWDTVG-CVWDGFSGSLFGIVS---IATLTVLAYERYIRVVHARV-------INFS-------W--AW---RAITYI-WLYSLAWAGAPLLGWNRYILDVHGL-----------GCTVDW--------KSKDA--ND--SS-FVLFLFLGCLVVPLGV------------------------IAHCYGHILYSI---R----M---LR---------C---V------EDLVI-----------------K---ILKYEKK----LAKMCFLMIFTF------LVCWMPYI-VICFLVV--NGH-----GH-L-------V---------T-PT---ISIVSYL------FAKSNTVYNPVIYVF----MI----------------------------------------------RKFR Mus_musculus_encephalopsin --LALL--LGCL------------------------ALL-------GVGGNLLVL----LLY-SK-FPRLR-TPTHLFLVNLSL--GDLLVS-----LFGV-TFTFASCLRN-GWVWDAVG-CAWDGFSGSLFGFVS---ITTLTVLAYERYIRVVHARV-------INFS-------W--AW---RAITYI-WLYSLAWAGAPLLGWNRYILDIHGL-----------GCTVDW--------RSKDA--ND--SS-FVLFLFLGCLVVPVGI------------------------IAHCYGHILYSV---R----M---LR---------C---V------EDLVI-----------------K---MLRYEKK----VAKMCFLMAFVF------LTCWMPYI-VTRFLVV--NGY-----GH-L-------V---------T-PT---VSIVSYL------FAKSSTVYNPVIYIF----MN----------------------------------------------RKFR Anopheles_gambiae_GPRop11 --AAVT--LFFI------------------------GFF-------GFFLNIFVI----ALM-YK-DVQLW-TPMNIILFNLVC--SDFSVS-----IIGN-PLTLTSAISH-RWLYGKSI-CVAYGFFMSLLGIAS---ITTLTVLSYERFCLIS--RP-------FAAQ-NRSK-QG--AC---LAVLFI-WSYSFALTSPPLFGWGAYVNEAANI-----------SCSVNW--------ESQTA--NA--TS-YIIFLFIFGLILPLAV------------------------IIYSYINIVLEM---R----K---NS---------A---R------VGRVN-----------------R---A---ERR----VTSMVAVMIVAF------MVAWTPYA-IFALIEQ--FGP-----PE-L-------I---------G-PG---LAVLPAL------VAKSSICYNPIIYVG----MN----------------------------------------------TQFR Anopheles_gambiae_GPRop12 --SAVT--LFFI------------------------GFF-------GFFLNLFVI----ALM-CK-DMQLW-TPMNIILFNLVC--SDFSVS-----IIGN-PLTLTSAISH-RWIFGRTL-CVAYGFFMSLLGITS---ITTLTVLSYERYCLIS--RP-------FSSR-NLTR-RG--AF---LAIFFI-WGYSFALTSPPLFGWGAYVQEAANI-----------SCSVNW--------ESQTK--NA--TT-YIIFLFVFGLVVPLIV------------------------IVYSYTNIIVNM---R----E---NS---------A---R------VGRIN-----------------R---A---EQR----VTSMVAVMIVAF------MVAWTPYA-IFALIEQ--FGP-----PE-L-------I---------G-PG---LAVLPAL------VAKSSICYNPIIYVG----MN----------------------------------------------TQFR Takifugu_rubripes_TMT_opsin --VVSV-FLGFI------------------------GTF-------GLVNNLLVL----VLF-CR-YKMLR-SPINLLLMNISI--SDLLVC-----VLGT-PFSFAASTQG-RWLIGEAG-CVWYGFANSLFGVVS---LISLAVLSFERYSTMM--TP-------TEAD-PSNY-CK--VC---LGITLS-WVYSLVWTVPPLFGWSSYGPEGPGT-----------TCSVNW--------TAKTT--NS--IS-YIICLFVFCLIVPFLV------------------------IVFCYGKLLCAI---R----Q---VS------GINA---S--------TSR-----------------K---R---EQR----VLCMVVIMVICY------LLCWLPYG-VVALLAT--FGP-----PD-L-------V---------T-PE---ASIIPSV------LAKSSTVINPIIYVF----MN----------------------------------------------KQ-- Branchiostoma_belcheri_opsin5 --VAGV--IAII------------------------GVV-------GFVSNGAVV----VLF-LK-FPQLR-TPFNLLLLNMAV--ADLLVS-----VCGN-TLSFASAVRH-RWLWGRPG-CVWYGFANHLFGLVS---LISLAVISFLRYRMVV--KPKGPG---SSY---LTY-TK--VG---LAILFI-YLYCLLWTTLPIAGWSSYQLEGPKI-----------GCSVAW--------EEHSW--SN--TS-YIVVLFITCLFAPLLI------------------------IVYSYYRLWHKV---K----Q---GS------RNLP---A------MRKSS-----------------Q---K---EQK----IAMMVIVMITCF------MVCWLPYG-AMALVVT--FGG-----ER-L-------I---------S-HT---AAVVPSL------LAKSSTCYNPVVYFA----MN----------------------------------------------SQFR Branchiostoma_belcheri_opsin4 --IATG--LALI------------------------GLV-------GSMNNFVVI----LLI-GC-HRQLR-TPFNLLLLNVSV--ADLLVS-----VCGN-TLSFASAVQH-RWLWGRPG-CVWYGFANSLFGIVS---LVTLSALAFERYCVVV--RS-------SEM---LTYKSS--LG---M-IAFI-WMYSLLWTSLPLLGWSSYQFEGHSV-----------GCSVNW--------VKHNV--NN--VS-YIITLMVTCFFVPMVV------------------------VCWSYACIWRTV---R----M---SA------EMKS---E------FGNPQ-----------------N---T---GRL----VTTMVVVMIVCF------LVCWTPYT-VMALIVT--FGA-----DH-L-------V---------T-PT---ASVIPSL------VAKSSTAYNPIIYVL----MN----------------------------------------------NQFR Ciona_intestinalis_opsin1 --LCVY--MTFV------------------------FLL-------SCSLNILVI----VAT-LK-NKVLR-QPLNYIIVNLAV--VDLLSG-----FVGG-FISIAANGAG-YFFWGKTM-CQIEGYFVSNFGVTG---LLSIAVMAFERYFVIC--KP---------FG-PVRF-EEKHSI---FGIVIT-WVWSMFWNTPPLIFWDGYDTEGLGT-----------SCAPNW--------FVKEK--RE--RL-FIILYFVFCFVIPLAV------------------------IMICYGKLILTL---R----Q---IA---------K-ESS------LSGGT-----------------S---P---EGE----VTKMVVVMVTAF------VFCWLPYA-AFAMYNV--VNP-----EA-Q-------I---------D-YA---LGAAPAF------FAKTATIYNPLIYIG----LN----------------------------------------------RQFR Danio_rerio_VAL_opsin --LAAL--MFVV------------------------TAL-------SLSENFTVM----LVT-FR-FQQLR-QPLNYIIVNLSL--ADFLVS-----LTGG-SISFLTNYHG-YFFLGKWA-CVLEGFAVTFFGIVA---LWSLAVLAFERFFVIC--RP---------LG-NIRL-RGKHAA---LGLVFV-WSFSFIWTVPPVLGWSSYTVSRIGT-----------TCEPNW--------YSGNF--HD--HT-FIITLFSTCFIFPLGV------------------------IIVCYCKLIRKL---R----K---VS---------NTHGR------LGNAR-----------------K---P---ERQ----VTRMVVVMIVAF------MVAWTPYA-AFSIIIT--AHP-----SM-H-------V---------D-PR---LAAIPAF------VAKTAAVYNPIIYVF----MN----------------------------------------------KQFR Petromyzon_marinus_pineal_opsin --LAAL--MGTI------------------------TAL-------SLGENFAVI----VVT-AR-FRQLR-QPLNYVLVNLAA--ADLLVS-----AIGG-SVSFFTNIKG-YFFLGVHA-CVLEGFAVTYFGVVA---LWSLALLAFERYFVIC--RP---------LG-NFRL-QSKHAV---LGLAVV-WVFSLACTLPPVLGWSSYRPSMIGT-----------TCEPNW--------YSGEL--HD--HT-FILMFFSTCFIFPLAV------------------------IFFSYGKLIQKL---K----K---AS---------ETQRG------LESTR-----------------R---A---EQQ----VTRMVVVMILAF------LVCWMPYA-TFSIVVT--ACP-----TI-H-------L---------D-PL---LAAVPAF------FSKTATVYNPVIYIF----MN----------------------------------------------KQFR Oncorhynchus_nerka_LWS --VSTLW-MIIV------------------------VIL-------SVFTNGLVL----VAT-AK-FKKLQ-HPLNWILVNLAI--ADIGET-----LLAS-TISVCNQFFG-YFILGHPM-CVFEGYTVSTCGIAA---LWSLAVISWERWVVVC--KP---------FG-SVKF-DAKWAM---GGIIFS-WVWSAFWCAPPIFGWSRYWPHGLKT-----------SCGPDV--------FGGNE--DPGVKS-YMITLMITCCFFPLFV------------------------IIFCYIFVWLAI---R----A---VA---------AQQKD------SESTQ-----------------K---A---EKE----VSRMVVVMIIAY------CVCWGPYT-CFACFAA--ANP-----GY-A-------F---------H-PL---AAAIPAY------FAKSATIYNPVIYVF----MN----------------------------------------------KQFR Geotria_australis_LWS --LTSFW-MIIV------------------------VIL-------SLFTNGLVL----VAT-LK-FKKLR-HPLNWILVNLAI--ADIGET-----IFAS-TVSVVNQIFG-YFILGHPL-CVFEGFTVSVCGITA---LWSLAIISFERWMVVC--KP---------FG-NLKF-DGKVAI---VLIIFS-WAWSAGWCAPPIFGWSRYWPHGLKT-----------SCGPDV--------FSGST--DPGVQS-YMVVLMITCCFIPLAL------------------------IIICYLQVWLAI---H----T---VA---------QQQKE------SETTQ-----------------K---A---ERD----VSRMVVVMIFAY------IFCWGPYT-FFACFAA--ANP-----GY-A-------F---------H-PL---AAALPAY------FAKSATIYNPIIYVF----MN----------------------------------------------RQFR Anolis_carolinensis_P_opsin --VAVL--MGLV------------------------VVL-------ATVVNGLVI----VVS-VR-YKRLR-SPLNYILVNLAV--ADLLVT-----SFGS-TISFANNIYG-FFVFGPTA-CEFEGFMVSLTGIVG---LWSLAILAFERYLVIC--KP---------VG-DFRF-QQRHAV---IGCAFT-WLWSLLWTLPPLFGWSSYIPEGLRT-----------SCGPNW--------YTGGN--DN--NS-YIMTLFVTCFITPLAM------------------------IIFSYANLLLTL---R----A---VA---------AQQKE------MATTQ-----------------Q---A---ERE----VTRMVVTMVMAF------LVCWLPYA-SFAMVVA--TNK-----DL-L-------I---------Q-PA---LASLPSY------FSKTATVYNPIIYVF----MN----------------------------------------------KQFR Geotria_australis_SWS --QAAF--MGFV------------------------FIC-------GTPLNAIVL----VVT-IK-YKKLR-QPLNYILVNISA--AGLVFC-----LFSI-STVFVASMQG-YFFLGPTI-CALEAFFGSLAGLVT---GWSLAFLAAERYIVIC--KP---------FG-NFRF-GSKHAL---VAVGLT-WMLGLSVALPPFFGWSRYIPEGLQC-----------SCGPDW--------YTVGTKYKS--EY-YTYFLFVFCFVVPLSI------------------------IIFSYGSLLGTL---R----A---VA---------AQQQE------SASTQ-----------------K---A---ERE----VSRMVIMMVASF------CTCYVPYA-ALAVYMV--TNR-----DH-N-------I---------D-LR---FVTVPAF------FSKASCVYNPLIYSF----MN----------------------------------------------KQFR Rana_catesbeiana_SWS1 --QAIF--MGVV------------------------FII-------GTPLNAVVL----LVT-VK-YKKLR-QPLNYILVNISV--GGLLIC-----IFSN-FVVFINSWQG-YFFFGKAF-CAIEAFVGTLAGLVT---GWSLAFLAFERYIVIC--KP---------MG-TFTF-TSKHAL---AVVLTT-WMIGVGVSVPPFFGWSRYIPEGLQC-----------SCGPDW--------YTVGTKYHS--EY-YTWFIFVFCFIIPLTL------------------------ICYSYARLLGAL---R----A---VA---------AQQQE------SASTQ-----------------K---A---EKE----VSRMVVVMVGSF------CLCYVPYA-AMAMYMI--TNR-----NH-G-------L---------D-LR---FVTIPAF------FSKSACVYNPIIYTF----MN----------------------------------------------KQFR Rattus_norvegicus_blue_cone_opsin --QAAF--MGFV------------------------FFA-------GTPLNATVL----VAT-LH-YKKLR-QPLNYILVNVSL--GGFLFC-----IFSV-FTVFIASCHG-YFLFGRHV-CALEAFLGSVAGLVT---GWSLAFLAFERYLVIC--KP---------FG-NIRF-NSKHAL---TVVLIT-WTIGIGVSIPPFFGWSRFIPEGLQC-----------SCGPDW--------YTVGTKYRS--EH-YTWFLFIFCFIIPLSL------------------------ICFSYFQLLRTL---R----A---VA---------AQQQE------SATTQ-----------------K---A---ERE----VSHMVVVMVGSF------CLCYVPYA-ALAMYMV--NNR-----NH-G-------L---------Y-LR---LVTIPAF------FSKSSCVYNPIIYCF----MN----------------------------------------------KQFR Cynops_pyrrhogaster_SWS1 --QTAF--MGFV------------------------FFV-------GTPLNAIVL----IVT-VK-YKKLR-QPLNYILVNVSL--AGFTFC-----IFSV-FSVFVASSQG-YFIFGKFM-CEMEAFLGSVSGLVT---GWSLAFLAIERYIVIC--KP---------MG-NFRF-ASKHAL---MIVLTT-WVIGFSVSIGPLVGWSRYIPEGLQC-----------SCGPDW--------YTVGTKYNS--ET-YTWFLFIFCFIIPLSL------------------------ICFCYSQLLGAL---R----A---VA---------AQQQE------SATTQ-----------------K---A---ERE----VTRMVIVMVASF------CVCYVPYA-AMAMYMV--NNR-----NH-G-------L---------D-LR---LVTIPAF------FSKSACVYNPIIYSF----MN----------------------------------------------KQFR Petromyzon_marinus_RhA --LAAY--MFFL------------------------ILV-------GFPVNFLTL----FVT-VQ-HKKLR-TPLNYILLNLAV--ANLFMV-----LFGF-TLTMYSSMNG-YFVFGPTM-CNFEGFFATLGGEMS---LWSLVVLAIERYIVIC--KP---------MG-NFRF-GSTHAY---MGVAFT-WFMALSCAAPPLVGWSRYLPEGMQC-----------SCGPDY--------YTLNPNFNN--ES-FVIYMFLVHFIIPFIV------------------------IFFCYGRLLCTV---K----E---AA---------AAQQE------SASTQ-----------------K---A---EKE----VTRMVVLMVIGF------LVCWVPYA-SVAFYIF--THQ-----GS-D-------F---------G-AT---FMTVPAF------FAKTSALYNPIIYIL----MN----------------------------------------------KQFR Geotria_australis_RhA --LAAY--MFFL------------------------ILV-------GFPVNFLTL----FVT-VQ-HKKLR-TPLNYILLNLAV--SNLFMI-----LFGF-TTTMYTSMNG-YFVFGPTM-CSIEGFFATLGGEVS---LWSLVVLAIERYIVIC--KP---------MG-NFRF-GNTHAI---MGVALT-WVMALSCAAPPLLGWSRYLPEGMQC-----------SCGPDY--------YTMNPTYNN--ES-FVIYMFIVHFTIPFVI------------------------IFFSYGRLLCTV---K----E---AA---------AAQQE------SASTQ-----------------K---A---EKE----VTRMVVLMVVGF------LVCWVPYA-SVAFYIF--TNQ-----GS-D-------F---------G-AT---FMTLPAF------FAKSSALYNPVIYIL----MN----------------------------------------------KQFR Latimeria_chalumnae_Rh2 --LAAY--MFFL------------------------ILV-------GFPINFLTL----FVT-IQ-HKKLR-TPLNYILLDLAV--ADLCMV-----FGGF-FVTMYSSMNG-YFVLGPTG-CNIEGFFATLGGQVA---LWALVVLAIERYVVVC--KP---------MS-NFRF-GENHAI---MGVIFT-WIMALSCAVPPLFGWSRYIPEGMQS-----------SCGVDY--------YTLKPEVNN--ES-FVIYMFVVHFTIPLIV------------------------IFFCYGRLVCTV---K----D---AA---------AQQQE------SATTQ-----------------K---A---EKE----VTRMVIVMVISF------LVCWVPYA-SVAAYIF--FNQ-----GS-E-------F---------G-PV---FMTAPSF------FAKSASFYNPVIYIL----LN----------------------------------------------KQFR Homo_sapiens_rhodopsin --LAAY--MFLL------------------------IVL-------GFPINFLTL----YVT-VQ-HKKLR-TPLNYILLNLAV--ADLFMV-----LGGF-TSTLYTSLHG-YFVFGPTG-CNLEGFFATLGGEIA---LWSLVVLAIERYVVVC--KP---------MS-NFRF-GENHAI---MGVAFT-WVMALACAAPPLAGWSRYIPEGLQC-----------SCGIDY--------YTLKPEVNN--ES-FVIYMFVVHFTIPMII------------------------IFFCYGQLVFTV---K----E---AA---------AQQQE------SATTQ-----------------K---A---EKE----VTRMVIIMVIAF------LICWVPYA-SVAFYIF--THQ-----GS-N-------F---------G-PI---FMTIPAF------FAKSAAIYNPVIYIM----MN----------------------------------------------KQFR Mus_musculus_rhodopsin --LAAY--MFLL------------------------IVL-------GFPINFLTL----YVT-VQ-HKKLR-TPLNYILLNLAV--ADLFMV-----FGGF-TTTLYTSLHG-YFVFGPTG-CNLEGFFATLGGEIA---LWSLVVLAIERYVVVC--KP---------MS-NFRF-GENHAI---MGVVFT-WIMALACAAPPLVGWSRYIPEGMQC-----------SCGIDY--------YTLKPEVNN--ES-FVIYMFVVHFTIPMIV------------------------IFFCYGQLVFTV---K----E---AA---------AQQQE------SATTQ-----------------K---A---EKE----VTRMVIIMVIFF------LICWLPYA-SVAFYIF--THQ-----GS-N-------F---------G-PI---FMTLPAF------FAKSSSIYNPVIYIM----LN----------------------------------------------KQFR Latimeria_chalumnae_Rh1 --LCAY--MFLL------------------------IIL-------GFPINFLTL----LVT-FK-HKKLR-QPLNYILVNLAV--ASLFMV-----VFGF-TVTFYSSLNG-YFVLGPMG-CAMEGFFATLGGQVA---LWSLVVLAIERYIVVC--KP---------MG-NFRF-ASSHAI---MGIAFT-WIMALACAAPPLVGWSRYIPEGLQC-----------SCGPDY--------YTLNPDFHN--ES-YVMYLFLVHFLLPIII------------------------IFFTYGRLICKV---K----E---AA---------AQQQE------SASTQ-----------------K---A---EKE----VTRMVILMVIGF------LTAWVPYA-SAAFWIF--CNR-----GA-E-------F---------T-AT---LMTVPAF------FSKSSCLFNPIIYVL----LN----------------------------------------------KQFR Geotria_australis_RhB --ISAY--VFTL------------------------ILI-------GFPVNFMTL----FVT-FK-LKKLR-QPLNFILVNLCV--ADLLMI-----MFGF-TTTFYTAMNG-YFVFGPTG-CNIEGFFATLGGEVS---LWSLVMLAIERYIVVC--KP---------MG-NFRF-ATTHAA---LGVVFT-WVMASACAVPPLVGWSRYIPEGMQC-----------SCGPDY--------YTLNPKYYN--ES-YVIYLFLVHFLLPVTI------------------------IFFTYGRLICTV---K----E---AA---------AQQQE------SASTQ-----------------K---A---ERE----VTRMVIIMVVGF------LVCWVPYA-SFAFYLF--MNK-----GI-L-------F---------S-AT---AMTVPAF------FSKSSVLYNPIIYVL----LN----------------------------------------------KQFR Geotria_australis_SWS2 --MSAF--MLFL------------------------VLA-------GFPLNFLTV----FVT-IK-YKKLR-SHLNYILVNLAI--ANLIVV-----CCGS-TLAFYSFMHK-YFILGPLF-CKMEGFTATLGGMLS---LWSLAVLAFERCLVIC--KP---------FG-NIAF-RGTHAL---IRCGFA-WAAAIAASTPPLFGWSRYIPEGLQC-----------SCGPDW--------YTTNNKYNN--ES-YVMFLFIFCFGTPFTI------------------------IIVSYSKLILTL---R----A---AA---------AQQQE------SASTQ-----------------K---A---EKE----VSRMVVIMVGGF------LVCWLPYA-SLALWIV--FNR-----GS-P-------F---------D-LR---LATIPSV------FSKASTVYNPVIYIF----LN----------------------------------------------KQFR Xenopus_laevis_green_rod_opsin --ISAF--MLFT------------------------IIF-------GFPLNLLTI----ICT-VK-YKKLR-SHLNYILVNLAV--ANLIVI-----CFGS-TTAFYSFSQM-YFSLGTLA-CKIEGFTATLGGIIG---LWSLAVVAFERFLVIC--KP---------MG-NFTF-RESHAV---LGCILT-WVIGLVAAIPPLLGWSRYIPEGLQC-----------SCGPDW--------YTVNNKWNN--ES-YVLFLFCFCFGFPLAI------------------------IVFSYGRLLLAL---H----A---VA---------KQQEQ------SATTQ-----------------K---A---ERE----VTRMVIVMVVGF------LVCWLPYA-SFALWAV--THR-----GE-L-------F---------D-LR---MSSVPSV------FSKASTVYNPFIYIF----MN----------------------------------------------RQFR Gallus_gallus_blue_cone_opsin --MAAF--MFLL------------------------IAL-------GVPINTLTI----FCT-AR-FRKLR-SHLNYILVNLAL--ANLLVI-----LVGS-TTACYSFSQM-YFALGPTA-CKIEGFAATLGGMVS---LWSLAVVAFERFLVIC--KP---------LG-NFTF-RGSHAV---LGCVAT-WVLGFVASAPPLFGWSRYIPEGLQC-----------SCGPDW--------YTTDNKWHN--ES-YVLFLFTFCFGVPLAI------------------------IVFSYGRLLITL---R----A---VA---------RQQEQ------SATTQ-----------------K---A---DRE----VTKMVVVMVLGF------LVCWAPYT-AFALWVV--THR-----GR-S-------F---------E-VG---LASIPSV------FSKSSTVYNPVIYVL----MN----------------------------------------------KQFR Branchiostoma_belcheri_Amphiop2 --IMGV--YLTI-----------------------VGLV-------ATVGNATVV----LMFIMKWRQLCR-KAPNLLVINLAA--ANLCIT-----IFGY-PFSASSGYAH-QWLFPDAI-CTLYGFSCFLLSMVS---MHTLCLISAHRYITIC--RP-------EHAS-KLTM-NR--TV---LAVIGT-WLYAIAVAVPPLFNIARYTYEPSGL-----------SCTIDF--------RVTTV--AD--LV-YLGSLIVLCYVIHVAV------------------------MATCYFKIIRKFSRHR----F---RQ---------V---R------DIRTS-----------------S---F---EMG----VTMRCILMTLFY------LLSWTPYT-AVCIWTM--VGP-----PP-P-------V------------V---VSMAAAL------IAKTHCAFNPILYAF----MS----------------------------------------------EVYR Branchiostoma_belcheri_Amphiop1 ----AI--YITL-----------------------TGLI-------AFFGNVITI----TVFLTE-KEFRK-KQQNGFVLNLAI--ADLSVC-----VFAY-PSSAIAGYAG-RWVLGDVG-CTIYGFLCFTFALVS---MVTLCVISIYRYILIC--KP-------QYAH-LLTH-RR--TV---YVIIGT-WLYALVFTVPPLVGVKRYTYEPMQI-----------TCSLDW--------NVQHP--GE--KA-YIAAVLVIVYVLQVLI------------------------MCFCYFNIIFKSANLK----F---AA---------L---A------SEKTK-----------------K---D---TWK----TSVMCLTMVVSF------LIAWTPYA-VSSTWDI--LSA-----EDLP-------I------------I---ATILPSL------FAKSSCMMNPIIYAC----CN----------------------------------------------TKFR Mizuhopecten_yessoensis_Go_rhodopsin --IIGI--FISI-----------------------CCII-------GVLGNLLII----IVF-AK-RRSVR-RPINFFVLNLAV--SDLIVA-----LLGY-PMTAASAFSN-RWIFDNIG-CKIYAFLCFNSGVIS---IMTHAALSFCRYIIIC--QY-------GYRK-KITQ-TT--VL---RTLFSI-WSFAMFWTLSPLFGWSSYVIEVVPV-----------SCSVNW--------YGHGL--GD--VS-YTISVIVAVYVFPLSI------------------------IVFSYGMILQEKVCKD----S---RK---------N---G------IRAQQ-----------------R---Y---EQR----VTFISFLMMAAF------MVAWTPYA-IMSALAIGSFNV-----EN-S-------F------------A---A--LPTL------FAKASCAYNPFIYAF----TN----------------------------------------------ANFR Branchiostoma_belcheri_Amphiop3 --IVGL--YLFV-----------------------IGII-------GTIENGITL----ATF-SK-FRSLR-SPTTMLLVHLAI--ADLGIC-----IFGY-PFSGASSLRS-HWLFGGVG-CQWYGFNGMFFGMAN---IGLLTCVAVDRYLVIC--RH-------DLVD-KVNY-NT--YG---VMAALG-WLFAAFWAALPLVGWAEYALEPSGT-----------ACTINF--------QKNDS--LY--IS-YVTSCFVLGFVVPLAV------------------------MAFCYWQ----ASCFV----S---KV---------L---K------GDIAA-----------------N---V---DWEYQNHFSKMCLAMVAAF------VVAWTPYS-VLFLFAA--FWN-----PA-D-------I---------P-AW---LTLLPPL------IAKSSALYNPIIYII----AN----------------------------------------------RRFR Mus_musculus_peropsin --VIAA--YLIV-----------------------AGIT-------SILSNVVVL----GIF-IK-YKELR-TPTNAVIINLAF--TDIGVS-----SIGY-PMSAASDLHG-SWKFGHAG-CQIYAGLNIFFGMVS---IGLLTVVAMDRYLTIS--CP-------DVGR-RMTT-NT--YL---SMILGA-WINGLFWALMPIIGWASYAPDPTGA-----------TCTINW--------RNNDT--SF--VS-YTMMVIVVNFIVPLTV------------------------MFYCYYH----VSRSL----R---LY---------A---A------SDCTL-----------------H---R---DWADQADVTKMSVIMILMF------LLAWSPYS-IVCLWAC--FGN-----PK-K-------I---------P-PS---MAIIAPL------FAKSSTFYNPCIYVA----AH----------------------------------------------KKFR Homo_sapiens_peropsin --IVAT--YLIM-----------------------AGMI-------SIISNIIVL----GIF-IK-YKELR-TPTNAIIINLAV--TDIGVS-----SIGY-PMSAASDLYG-SWKFGYAG-CQVYAGLNIFFGMAS---IGLLTVVAVDRYLTIC--LP-------DVGR-RMTT-NT--YI---GLILGA-WINGLFWALMPIIGWASYAPDPTGA-----------TCTINW--------RKNDR--SF--VS-YTMTVIAINFIVPLTV------------------------MFYCYYH----VTLSI----K---HH---------T---T------SDCTL-----------------N---R---DWSDQIDVTKMSVIMICMF------LVAWSPYS-IVCLWAS--FGD-----PK-K-------I---------P-PP---MAIIAPL------FAKSSTFYNPCIYVV----AN----------------------------------------------KKFR ; END; BEGIN TREES; Title 'Trees from "opsin-5M.con.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Terebratalia_transversa_Go_opsin2, 2 Terebratalia_transversa_Go_opsin1, 3 Mus_musculus_RGR, 4 Bos_taurus_RGR, 5 Homo_sapiens_RGR, 6 Terebratalia_transversa_r_opsin, 7 Schistosoma_mansoni_opsin, 8 Platynereis_dumerilii_r_opsin, 9 Mizuhopecten_yessoensis_Gq_rhodopsin, 10 Enteroctopus_dofleini_opsin, 11 Loligo_forbesii_opsin, 12 Alloteuthis_subulata_opsin, 13 Sepia_officinalis_opsin, 14 Todarodes_pacificus_opsin, 15 Xenopus_laevis_melanopsin, 16 Mus_musculus_melanopsin, 17 Homo_sapiens_melanopsin, 18 Limulus_polyphemus_ocellus_opsin, 19 Hemigrapsus_sanguineus_Rh1, 20 Mus_musculus_MLT, 21 Xenopus_laevis_MLT, 22 Homo_sapiens_somatostatin, 23 Drosophila_melanogaster_allatostatin, 24 Homo_sapiens_NK_1_receptor, 25 Drosophila_melanogaster_Tachykinin_like_receptor, 26 Terebratalia_transversa_c_opsin, 27 Platynereis_dumerilii_c_opsin, 28 Homo_sapiens_encephalopsin, 29 Mus_musculus_encephalopsin, 30 Anopheles_gambiae_GPRop11, 31 Anopheles_gambiae_GPRop12, 32 Takifugu_rubripes_TMT_opsin, 33 Branchiostoma_belcheri_opsin5, 34 Branchiostoma_belcheri_opsin4, 35 Ciona_intestinalis_opsin1, 36 Danio_rerio_VAL_opsin, 37 Petromyzon_marinus_pineal_opsin, 38 Oncorhynchus_nerka_LWS, 39 Geotria_australis_LWS, 40 Anolis_carolinensis_P_opsin, 41 Geotria_australis_SWS, 42 Rana_catesbeiana_SWS1, 43 Rattus_norvegicus_blue_cone_opsin, 44 Cynops_pyrrhogaster_SWS1, 45 Petromyzon_marinus_RhA, 46 Geotria_australis_RhA, 47 Latimeria_chalumnae_Rh2, 48 Homo_sapiens_rhodopsin, 49 Mus_musculus_rhodopsin, 50 Latimeria_chalumnae_Rh1, 51 Geotria_australis_RhB, 52 Geotria_australis_SWS2, 53 Xenopus_laevis_green_rod_opsin, 54 Gallus_gallus_blue_cone_opsin, 55 Branchiostoma_belcheri_Amphiop2, 56 Branchiostoma_belcheri_Amphiop1, 57 Mizuhopecten_yessoensis_Go_rhodopsin, 58 Branchiostoma_belcheri_Amphiop3, 59 Mus_musculus_peropsin, 60 Homo_sapiens_peropsin; TREE con_50_majrule = (1:0.8666791598166114,2:0.3835803275669745,((((3:0.06006838457383274,(4:0.06216606018465384,5:0.03751585531590549):0.0541498543855105):0.6842344618826676,(58:0.4077025838983336,(59:0.05809126281879778,60:0.0568995637251714):0.3200684111214618):0.167713546840811):0.1393614672826312,((((((((6:0.5249070257224521,7:0.3468517038243416):0.07488036224719656,8:0.3390300781602382):0.06416226161166166,(10:0.05027017905082964,(((11:0.01655479040699409,12:0.02532394310088233):0.03673562972571259,13:0.02414870338065487):0.01921030982584876,14:0.03627517294269025):0.1138465592256186):0.1933046159418628):0.04257084193408015,9:0.2485473247730411):0.1042903329690615,(15:0.2221093031772858,(16:0.03643015652067508,17:0.03596128499811171):0.1562804837392987):0.2469035021089338):0.05390149860174258,(18:0.411027681492844,19:0.3401241378516178):0.1963114199864864):0.1714227369222506,((20:0.2806563526854677,21:0.2607979056815578):0.5645475744791713,((22:0.497046979571417,23:0.401175976639575):0.1965744909587007,(24:0.4280362690687478,25:0.3927180125294593):0.2475922063871038):0.1363841025440738):0.2642165069562111):0.09256866570937394,(26:0.4383642661104891,(27:0.4822220177426759,(((28:0.01764385011314352,29:0.08880405557041149):0.4831933177642187,32:0.2973764564492163,(33:0.2872248647427697,34:0.1908276253984273):0.1651411939483314):0.08318920962334724,(30:0.08327414943686569,31:0.0227137861151459):0.4100943649178104,(35:0.4310094113419806,(36:0.1306993113489908,37:0.159196358889521):0.2173481503234056,((38:0.08626815992228565,39:0.08856236824225361):0.3438851120026361,(40:0.1587462432209323,((41:0.06891561011154833,(42:0.0929577616677107,(43:0.07973992835448397,44:0.07811093438673813):0.04372190783391743):0.07073093093638279):0.209910284773471,((((45:0.03206612319608503,46:0.04756241178169698):0.03544007474583842,(47:0.07436153022342155,(48:0.03044459093672729,49:0.01018579011766695):0.05650365785868387):0.07090965065703202):0.04631979582456754,(50:0.1067460396948839,51:0.08659482293406721):0.03236896245038362):0.1923899869543813,(52:0.140110455137425,(53:0.09077780090054559,54:0.1304896063148605):0.07902720868186815):0.07820531152751924):0.06343611919466217):0.1509544837448004):0.05125793292347382):0.05543374178930627):0.2797270768606784):0.0774772706494071):0.118436715453859):0.08051873710202424):0.08964998367124756):0.1045278600228003,((55:0.4332540265077043,56:0.4033732840168339):0.2008730009871817,57:0.5782155146205085):0.1130340838924135):0.289704727978331); END;