#NEXUS [written Sun Apr 14 14:10:09 CAT 2013 by Mesquite version 2.75 (build 564) at PC-de-Mika/127.0.0.1] BEGIN TAXA; TITLE Taxa_for_Ceratocystis_moniliformis_s.l._TUBB1_analysis; DIMENSIONS NTAX=22; TAXLABELS CMW36826_Ceratocystis_cryptoformis CMW36827_Ceratocystis_cryptoformis CMW36828_Ceratocystis_cryptoformis CMW36870_Ceratocystis_cryptoformis CMW36836_Ceratocystis_oblonga CMW36853_Ceratocystis_oblonga CMW23803_Ceratocystis_oblonga CMW30835_Ceratocystis_oblonga CMW36829_Ceratocystis_savannae CMW36858_Ceratocystis_savannae CMW17300_Ceratocystis_savannae CMW30828_Ceratocystis_savannae CMW8217_Ceratocystis_bhutanensis CMW8242_Ceratocystis_bhutanensis CMW25914_Ceratocystis_decipiens CMW25919_Ceratocystis_decipiens CMW25911_Ceratocystis_salinaria CMW25917_Ceratocystis_salinaria CMW15245_Thielaviopsis_ceramica CMW15248_Thielaviopsis_ceramica CMW9986_Ceratocystis_moniliformopsis CMW10214_Ceratocystis_moniliformopsis ; END; BEGIN CHARACTERS; TITLE Ceratocystis_moniliformis_s.l._TUBB1_alignments; DIMENSIONS NCHAR=442; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = N; MATRIX CMW36826_Ceratocystis_cryptoformis CCCACTCTTTCCGCGCTGTCACTGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW36827_Ceratocystis_cryptoformis CCCACTCTTTCCGCGCTGTCACTGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCTGATTTCCGCAACGGTCGCTACC CMW36828_Ceratocystis_cryptoformis CCCACTCTTTCCGCGCTGTCACTGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW36870_Ceratocystis_cryptoformis CCCACTCTTTCCGCGCTGTCACTGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW36836_Ceratocystis_oblonga CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW36853_Ceratocystis_oblonga CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW23803_Ceratocystis_oblonga CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW30835_Ceratocystis_oblonga CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW36829_Ceratocystis_savannae CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW36858_Ceratocystis_savannae CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW17300_Ceratocystis_savannae CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTNGCTACC CMW30828_Ceratocystis_savannae CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW8217_Ceratocystis_bhutanensis CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW8242_Ceratocystis_bhutanensis CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW25914_Ceratocystis_decipiens CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW25919_Ceratocystis_decipiens CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW25911_Ceratocystis_salinaria CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW25917_Ceratocystis_salinaria CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW15245_Thielaviopsis_ceramica CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW15248_Thielaviopsis_ceramica CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW9986_Ceratocystis_moniliformopsis CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW10214_Ceratocystis_moniliformopsis CCCACTCTTTCCGCGCTGTCAGCGTTCCTGAGCTCACCCAGCAGATGTTCGACCCCAAGAACATGATGGCTGCTTCCGATTTCCGCAACGGTCGCTACC CMW36826_Ceratocystis_cryptoformis TGACCTGCTCTGCCATTTTGTAAGTTTCTT---------ATCCCTGCATTATATTTGGAGTATCATTCACTAACATTCATTTTCCCTATAGCCGTGGTA CMW36827_Ceratocystis_cryptoformis TGACCTGCTCTGCCATTTTGTAAGTTTCTT---------ATCCCTGCATGATATTTGGAGTATCATTCACTAACATTCATTTTCCCTATAGCCGTGGTA CMW36828_Ceratocystis_cryptoformis TGACCTGCTCTGCCATTTTGTAAGTTTCTT---------ATCCCTGCATTATATTTGGAGTATCATTCACTAACATTCATTTTCCCTATAGCCGTGGTA CMW36870_Ceratocystis_cryptoformis TGACCTGCTCTGCCATTTTGTAAGTTTCTT---------ATCCCTGCATTATATTTGGAGTATCATTCACTAACATTCATTTTCCCTATAGCCGTGGTA CMW36836_Ceratocystis_oblonga TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CTCCCTGCATTATATTTGGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW36853_Ceratocystis_oblonga TGACCTGCTCTGCCATTTTGTAAGTTCYTT---------CTCCCTGCATTATATTTGGAGTATCATTTACTAACATTCATTTTCTCTATAGCCGTGGTA CMW23803_Ceratocystis_oblonga TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CTCCCTGCATTATATTTGGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW30835_Ceratocystis_oblonga TGACCTGCTCTGCCATCTTGTAAGTTTCTT---------CTCCCTGCATTATATTTGGAGTATCATTTACTAACATTAATTTTCTCTATAGCCGTGGTA CMW36829_Ceratocystis_savannae TGACCTGCTCTGCCATTTTGTAAGTTCTTT---------CTCCCTGCATCATATTTGGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW36858_Ceratocystis_savannae TGACCTGCTCTGCCATCTTGTAAGTTCTTT---------CTCCCTGCATCATATTTGGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW17300_Ceratocystis_savannae TGACCTGCTCTGCCATTTTGTAAGTTCTTT---------CTCCCTGCATCATATTTGGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW30828_Ceratocystis_savannae TGACCTGCTCTGCCATTTTGTAAGTTCTTT---------CTCCCTGCATCATATTTGGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW8217_Ceratocystis_bhutanensis TGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCATCATACTTAGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW8242_Ceratocystis_bhutanensis TGACCTGCTCTGCCATTTTGTAAGTTCCTT---------CTCCCTGCATCATACTTGGAGTATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW25914_Ceratocystis_decipiens TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CTCCATGCACCATATTTGGAATATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW25919_Ceratocystis_decipiens TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CTCCCTGCACCATATTTGGAATATCATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW25911_Ceratocystis_salinaria TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CGCCTTGCGTCGTATTTGGAGTATCATTCACTAACATACATTTTCTCTATAGCCGTGGTA CMW25917_Ceratocystis_salinaria TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CGCCTTGCGTCGTATTTGGAGTATCATTCACTAACATACATTTTCTCTATAGCCGTGGTA CMW15245_Thielaviopsis_ceramica TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CTCCCTGCATCATATTTGGAGTATTATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW15248_Thielaviopsis_ceramica TGACCTGCTCTGCCATCTTGTAAGTTCCTT---------CTCCCTGCATCATATTTGGAGTATTATTCACTAACATTCATTTTCTCTATAGCCGTGGTA CMW9986_Ceratocystis_moniliformopsis TGACCTGTTCTGCCATCTTGTAAGTTATTTTTGGAGGAACTTTTCGTTTCATATTTGGAGCA-CATTGACTAACATATATTTTCTCTATAGCCGTGGTA CMW10214_Ceratocystis_moniliformopsis TGACCTGTTCTGCCATCTTGTAAGTTATTTTTGGAGGAACTTTTCGTTTCATATTTGGAGCA-CATTGACTAACATATATTTTCTCTATAGCCGTGGTA CMW36826_Ceratocystis_cryptoformis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW36827_Ceratocystis_cryptoformis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW36828_Ceratocystis_cryptoformis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW36870_Ceratocystis_cryptoformis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW36836_Ceratocystis_oblonga AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW36853_Ceratocystis_oblonga AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW23803_Ceratocystis_oblonga AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW30835_Ceratocystis_oblonga AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW36829_Ceratocystis_savannae AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW36858_Ceratocystis_savannae AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW17300_Ceratocystis_savannae AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW30828_Ceratocystis_savannae AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW8217_Ceratocystis_bhutanensis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW8242_Ceratocystis_bhutanensis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW25914_Ceratocystis_decipiens AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW25919_Ceratocystis_decipiens AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW25911_Ceratocystis_salinaria AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW25917_Ceratocystis_salinaria AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW15245_Thielaviopsis_ceramica AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW15248_Thielaviopsis_ceramica AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCCC CMW9986_Ceratocystis_moniliformopsis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCTC CMW10214_Ceratocystis_moniliformopsis AGGTCGCCATGAAGGAGGTTGAGGACCAGATGCGCAACGTCCAGAACAAGAACTCCTCTTACTTCGTTGAGTGGATCCCCAACAACGTCCAGACCGCTC CMW36826_Ceratocystis_cryptoformis TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW36827_Ceratocystis_cryptoformis TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW36828_Ceratocystis_cryptoformis TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW36870_Ceratocystis_cryptoformis TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW36836_Ceratocystis_oblonga TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW36853_Ceratocystis_oblonga TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW23803_Ceratocystis_oblonga TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW30835_Ceratocystis_oblonga TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW36829_Ceratocystis_savannae TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW36858_Ceratocystis_savannae TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW17300_Ceratocystis_savannae TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW30828_Ceratocystis_savannae TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW8217_Ceratocystis_bhutanensis TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACATTCGTTGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW8242_Ceratocystis_bhutanensis TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTTGGTAACTCTACTGCTATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW25914_Ceratocystis_decipiens TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCCTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW25919_Ceratocystis_decipiens TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCCTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW25911_Ceratocystis_salinaria TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW25917_Ceratocystis_salinaria TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW15245_Thielaviopsis_ceramica TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW15248_Thielaviopsis_ceramica TGTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCGACCTTCGTCGGTAACTCTACTGCCATCCAGGAGCTGTTCAAGCGCATTGGTGAGCAGTTCA CMW9986_Ceratocystis_moniliformopsis TCTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCCACCTTCGTCGGTAACTCTACTGCTATCCAGGAGCTCTTCAAGCGCATTGGTGAGCAGTTCA CMW10214_Ceratocystis_moniliformopsis TCTGCTCCATTCCTCCCCGTGGCCTCAAGATGTCTTCCACCTTCGTCGGTAACTCTACTGCTATCCAGGAGCTCTTCAAGCGCATTGGTGAGCAGTTCA CMW36826_Ceratocystis_cryptoformis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW36827_Ceratocystis_cryptoformis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW36828_Ceratocystis_cryptoformis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW36870_Ceratocystis_cryptoformis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW36836_Ceratocystis_oblonga CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW36853_Ceratocystis_oblonga CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW23803_Ceratocystis_oblonga CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW30835_Ceratocystis_oblonga CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW36829_Ceratocystis_savannae CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW36858_Ceratocystis_savannae CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW17300_Ceratocystis_savannae CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW30828_Ceratocystis_savannae CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW8217_Ceratocystis_bhutanensis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW8242_Ceratocystis_bhutanensis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW25914_Ceratocystis_decipiens CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW25919_Ceratocystis_decipiens CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW25911_Ceratocystis_salinaria CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW25917_Ceratocystis_salinaria CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW15245_Thielaviopsis_ceramica CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW15248_Thielaviopsis_ceramica CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW9986_Ceratocystis_moniliformopsis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA CMW10214_Ceratocystis_moniliformopsis CTGCCATGTTCCGTCGCAAGGCTTTCTTGCATTGGTACACTAACGA ; END; BEGIN TREES; Title Most_ParsimoniousTrees_from_Ceratocystis_moniliformis_s.l._TUBB1_analysis; LINK Taxa = Taxa_for_Ceratocystis_moniliformis_s.l._TUBB1_analysis; TRANSLATE 1 CMW36826_Ceratocystis_cryptoformis, 2 CMW36827_Ceratocystis_cryptoformis, 3 CMW36828_Ceratocystis_cryptoformis, 4 CMW36870_Ceratocystis_cryptoformis, 5 CMW36836_Ceratocystis_oblonga, 6 CMW36853_Ceratocystis_oblonga, 7 CMW23803_Ceratocystis_oblonga, 8 CMW30835_Ceratocystis_oblonga, 9 CMW36829_Ceratocystis_savannae, 10 CMW36858_Ceratocystis_savannae, 11 CMW17300_Ceratocystis_savannae, 12 CMW30828_Ceratocystis_savannae, 13 CMW8217_Ceratocystis_bhutanensis, 14 CMW8242_Ceratocystis_bhutanensis, 15 CMW25914_Ceratocystis_decipiens, 16 CMW25919_Ceratocystis_decipiens, 17 CMW25911_Ceratocystis_salinaria, 18 CMW25917_Ceratocystis_salinaria, 19 CMW15245_Thielaviopsis_ceramica, 20 CMW15248_Thielaviopsis_ceramica, 21 CMW9986_Ceratocystis_moniliformopsis, 22 CMW10214_Ceratocystis_moniliformopsis; TREE PAUP_1 = (((((((1:0.0,2:1.0,3:0.0,4:0.0):5.0,8:2.0):1.0,5:0.0,6:2.0,7:0.0):1.0,((9:0.0,11:0.0,12:0.0):1.0,10:0.0):1.0):1.0,(15:1.0,16:0.0):3.0,(19:0.0,20:0.0):1.0):2.0,(17:0.0,18:0.0):3.0):15.0,(21:0.0,22:0.0):11.0):0.0; TREE PAUP_2 = (((((((1:0.0,2:1.0,3:0.0,4:0.0):5.0,6:1.0):1.0,5:0.0,7:0.0,8:3.0):1.0,((9:0.0,11:0.0,12:0.0):1.0,10:0.0):1.0):1.0,(15:1.0,16:0.0):3.0,(19:0.0,20:0.0):1.0):2.0,(17:0.0,18:0.0):3.0):15.0,(21:0.0,22:0.0):11.0):0.0; TREE PAUP_3 = ((((((((1:0.0,2:1.0,3:0.0,4:0.0):5.0,8:2.0):1.0,6:0.0):2.0,5:0.0,7:0.0):1.0,((9:0.0,11:0.0,12:0.0):1.0,10:0.0):1.0):1.0,(15:1.0,16:0.0):3.0,(19:0.0,20:0.0):1.0):2.0,(17:0.0,18:0.0):3.0):15.0,(21:0.0,22:0.0):11.0):0.0; TREE PAUP_4 = (((((((1:0.0,2:1.0,3:0.0,4:0.0):4.0,(6:1.0,8:2.0):1.0):2.0,5:0.0,7:0.0):1.0,((9:0.0,11:0.0,12:0.0):1.0,10:0.0):1.0):1.0,(15:1.0,16:0.0):3.0,(19:0.0,20:0.0):1.0):2.0,(17:0.0,18:0.0):3.0):15.0,(21:0.0,22:0.0):11.0):0.0; TREE PAUP_5 = ((((((((1:0.0,2:1.0,3:0.0,4:0.0):5.0,6:1.0):1.0,8:1.0):2.0,5:0.0,7:0.0):1.0,((9:0.0,11:0.0,12:0.0):1.0,10:0.0):1.0):1.0,(15:1.0,16:0.0):3.0,(19:0.0,20:0.0):1.0):2.0,(17:0.0,18:0.0):3.0):15.0,(21:0.0,22:0.0):11.0):0.0; TREE PAUP_6 = (((((((1:0.0,2:1.0,3:0.0,4:0.0):5.0,8:2.0):1.0,5:0.0,7:0.0):1.0,((6:2.0,9:0.0,11:0.0,12:0.0):1.0,10:0.0):1.0):1.0,(15:1.0,16:0.0):3.0,(19:0.0,20:0.0):1.0):2.0,(17:0.0,18:0.0):3.0):15.0,(21:0.0,22:0.0):11.0):0.0; TREE PAUP_7 = ((((((1:0.0,2:1.0,3:0.0,4:0.0):6.0,5:0.0,(6:1.0,8:2.0):1.0,7:0.0):1.0,((9:0.0,11:0.0,12:0.0):1.0,10:0.0):1.0):1.0,(15:1.0,16:0.0):3.0,(19:0.0,20:0.0):1.0):2.0,(17:0.0,18:0.0):3.0):15.0,(21:0.0,22:0.0):11.0):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 442; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 442; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 442; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1365941409221; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3134846246908351291; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 235202481221408311; mqVersion 275; checksumv 0 3 1741056536 null getNumChars 442 numChars 442 getNumTaxa 22 numTaxa 22 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 214354.0 sumSquares -9.2233720368547144E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #235202481221408311 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;