NEXUS
[File created by TreeBASE:  7/26/07  21:09:06]
[Matrix accession#: M2408]

BEGIN TAXA;
	TITLE M2408;
	DIMENSIONS  NTAX=19;
	TAXLABELS
		Tripterococcus_brunonis	Stackhousia_monogyna	Siphonodon_celastrineus	Quetzalia_occidentalis	Peripterygia_marginata	Parnassia_trinervis	Parnassia_tenella	Parnassia_palustris	Parnassia_palustris_A	Parnassia_laxmanii	Parnassia_glauca	Parnassia_faberi	Mortonia_greggii	Lepuropetalon_spathulatum	Empleuridium_juniperinum	Dicarpellum_pancheri	Canotia_holacantha	Brexia_madagascariensis	Zinowiewia_concinna
	;
END;

BEGIN CHARACTERS;
	TITLE M2408;
	DIMENSIONS NCHAR=348;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Tripterococcus_brunonis         TCGAAACCTGCTCGAACGGA--ACGATCTGCGAACCGGTGCGANNNNNNNNCTTGCGGGAGGAGGGCACAAAACCCCTCTTCCATCGCGNNNNNNNNGGCGAATCCGGTGNNNNNNNNNGCTCCGGACTCTAGCCC---------NNNNNNNNNNNNAATAACAC???-???GGCGCGAATTGCGCCAAGGACT?-cAATTGNNNNNNNNNNNNNNNNNNCCCACGCCCGGGATT-CGGT-ANNNNNNNGCGGCGTTGATGTCGTCGTATATAGTANNNNTTAA---------------------------------------------------AC?A??AC?CCA?
		Stackhousia_monogyna            TCGAAACCTGCCCTAACGGA--ACGA??-GCGAACCGGTTATANNNNNNNNCAGTCGGTCGGGGAGCCGGTAACGGAACCCCGACCGCGNNNNNNNNGGCGATGTTGGGGNNNNNNNNNCCCGATGTCCATCGCCC---------NNNNNNNNNNNNAAGAACAAAAAATTCGGCGCGAATTGCGCTAAGGAAT?-gTTACCNNNNNNNNNNNNNNNNNNCCC-?GTGCCATTCT-CGGT-TNNNNNNNGCGACGTCGAT---???AAATATTATANNNNCTAACGACTCTCGGCAACGGATATCTCGGCTCTCGC-------------------AC?A??AC?CC??
		Siphonodon_celastrineus         TCGAAACCTG-----?CAGA--ACGACCCGCGAACCGTTCAAANNNNNNNNCATGGGCGACGGGCCTCTCGGTCGGTCGCCTGACGGCTNNNNNNNNAGAGCGGACTGTGNNNNNNNNN???????-?????????---------NNNNNNNNNNNNAACAA--CGAACCCCGGCGTGAATTGCGCCAAGGAATYGAAGAAANNNNNNNNNNNNNNNNNNCCCCCGTCCCGGAAA-CGGA-GNNNNNNNAGGGATGCGCGATCGTCGATATCGCATNNNNGAAATGACTCTCGGCAACG------------------------------------?C?A??CA?CCA?
		Quetzalia_occidentalis          TCGAAACCTGCCC-GGCAGC--ACGACCCGCGAATCGGTTAATNNNNNNNNTGCGGTCGTCGAG????--??CGAGACGACTGCCAGCTNNNNNNNNGGTGGGAGCTGGGNNNNNNNNNACGCCGACGCCCCCACC---------NNNNNNNNNNNNAACAA--CGAACCCCGGCGCGGACTGCGCCAAGGAACACGAACTANNNNNNNNNNNNNNNNNNCCCCCGTCCCGGAAA-CGGT-GNNNNNNNGGTTTTGTGCAGTCGTTGATGCCTTAANNNNAAAACGACTCTCAGCAACG------------------------------------AC?A??CA?CCA?
		Peripterygia_marginata          TCGAAACCCGCAA-CGCAGA--ACGACCCGCGAACCGGTGAAANNNNNNNNCCCGGGCGGCCGCCCCACGGGCCGGTTGTC------CGNNNNNNNNGGCGGGGGCCGCGNNNNNNNNNCCGCACGCCCCCCGTCG---------NNNNNNNNNNNNAACAA--CGAACCCCGGCGCGAATCGCGCCAAGGAACCGAAAGAANNNNNNNNNNNNNNNNNNCCCTCGTCCCGGAAATCGGC-GNNNNNNNGGGGATGCGTCGTCGTGGATTTCATATNNNNAAAACGACTYTCGGCAAC-------------------------------------AC?A??CA?ACA?
		Parnassia_trinervis             TCGAAATCTGCAR-AGCAGA--ATGACTCGCGAACAAGTGTAAAA-TCATGGTTGAA?-?GGAGGCACCACGGTCGCCTTCTCCTTTCAACT-GATCATTGGA?????------?TGGGCATTGGGCCCGTCCCCT--GYACCTCMYGTGGTCCACWMTCAA--CAYAYCTCAGCGCRGACTGCGMCAAGGAAM?-CAAACATAAGG--TRCKCT---GCCCTTTRCACYATAAA-TGGATGCGTG---TGGCTTGCGTACTTCCGMTCAATCTAACGTTACAACGACTCTCGGCAACG------------------------------------ACCACGCCCCAAA
		Parnassia_tenella               TCGAAATCTGCAA-AGCAGA--ATGACCTGCGAACAAGTGAAAAA-TCGTGGTTGAAAAAAGGCGCC-----???????????-----AACTGGGTCATTGGA?????------?TGGGCCTTGTG??????-----????CCTCTCGTGTTCC-CAATCTA-?TAAACCTCAGCGCGGAATGCGCCAAGGACA?-CAAACAGAAGG--TACGCTGATGCCCCTTGCACCGTAAA-TGGTTGTGCG---TGGCTTGCGTATTTT-GCTTAATCTAATGTTACAACGACTCTCGGCAACGGATATCTTGGCTCTCGCATCGATGAAGAAACGTAGCAccaA?gcAcaca
		Parnassia_palustris             TCGAAATCTGCAA-AGCAGAGAATGACTTGCGAACAAGTGAAAA--TCATGGTTGGAAGAGGAGGCACCACGGTCGCCCTTGTCTTTCAACT-GATCATTGGAGGCGGCGGCGGTTGGGCCTCGTGCCCCCCCGTT-CGTGCCTCTCATGGTCC-CAATCCA-?CATACCTCAGCGCGGAATGCGCCAAGGAAA?-CAAACAGAAGG--TACGCT---GCCCCTTGCACCGAAAAATGGTTGTGTG---TGGCTTGCGTATTTC-GCTTAATCTAATGTTACAACGACTCTCGGCAACGGATATCTTGGCTCTCGCATCGATGAAGAA-CGTAGCAAGACCGCCAACA
		Parnassia_palustris_A           TCGAAATCTGCAA-AGCAGAGAATGACTTGCGAACAAGTGAAAA--TCATGGTTGGAAGAGGAGGCACCACGGTCGCCCTTGTCTTTCAACT-GATCATTGGAGGCGGCGGCGGTTGGGCCTCGTGCCCCCTCGTC-CGTGCCTCTCATGGTCC-CAGTCCA-?CATACCTCAGCGCGGAATGCGCCAAGGAAA?-CAAACAGAAGG--TACGCT---GCCCCTTGCACCGTAAA-TGGTTGTGTG---TGGCTTGCGTATTTC-GCTTAATCTAATGTTACAACGACTCTCGGCAACGGA----------------------------------AAGACCGCCCACA
		Parnassia_laxmanii              TCGAAATCTGCAA-AGCAGA--ATGACTTGCGAACAAGTGAAAAATCCATGGTTGGAGG-----GCACCACGG????????------?AACC-GATGATCGCTGGAGGCGGCGGTTGGGCCTCGTGCCCCCCCTCC--GTACCTCTCACGGTCC-CAACCAA--CATACCTCAGCGCGGAATGCGCCAAGGAAA?-CAAACAGAAGG--TACGCT---GCCCCTTGCACCGTAAA-TGGTTGCGCG---TGGCTTGCGTATTTC-GCTTAATCTAATGTTACAACGACTCTCGGCAACGGA----------------------------------ACACCGCCCCACA
		Parnassia_glauca                TCGAAATCTGCAA-AGCAGA--ATAACTTGCGAACAAGTGAAAAat----------------------?ATGGTTGCCTTCTCATTTGAGTT-GATCATTGGGAG-GGCGGTCTCT---CATTGTGCCCCCAAATGTCGTCCCTCTCATGGTCC-CAATCAA--CACACCTCAGCGCGGAATGCGCCAAGGAAC?-CGAACTTAAGT--TATGTA---GCCTCTTGCATCGTAAA-TGGTTGTGCG---TGGCTTGCGTATTTT-GCTTAATCTAATGT-ACAACGACTCTCGGCAACGGAT---------------------------------ACA?CACCCCACC
		Parnassia_faberi                TCGAAATCTGCAA-AGCAGA--ATGACTTGCGAACAAGTGCAAA--ccaTGGTTGAAAG-----GCACCACGGTCGCCT??-----??AACC-GATCATTGGAGGCGGT----------?CCCGT?-????????------------ATGGTCA-AAATCAACAAATACCTCAGCGCGGAATGCGCCAAGGAAAAACAAACATAAGGGGTACGCCTACGCCTCTTGCACCGTAAA-TGGTTGTGTGGTGTGGCTTGCGTATTTC-GCTTAATCTAATGTTACAACGAC-----------------------------------------------ACGCC?AAACACA
		Mortonia_greggii                TCGAAACCTGCAC-AGCAGA--ACGACCCGCGAATCTGTGGAANNNNNNNNGTCTTCGTCCGTTGGGCGATGCGCGTCCTC?--TTTGTNNNNNNNNGTTGTGGTCGAGANNNNNNNNNACCCTTGCCCGCCCTCC---------NNNNNNNNNNNNATCAAATGAACCCCGGGCGCAAACCGCGCCAAGGAACACATGAAANNNNNNNNNNNNNNNNNNCCTNCACCTCGGAAA-CGGT-GNNNNNNNAGGG?-?CGTAGTCGTCAATAGCTTTANNNNAAANCGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAA-CGTAGCAC?A??AA?CCA?
		Lepuropetalon_spathulatum       TCGAAATCTGCAA-AGCAGG--ACGACTCGCGAACAAAGTGAAACCACTATGTTGAACGGAAAGAGTCGACGACt--?TTTACCCTTCAACCTGATCAT--???TTGGTTG----?GGCACTCGTGCCCCGTCCCT--------CTTGTGGTCC-CAAAAAA--CACACCTCAGCGCGGAATGCGCCAAGGAAA?-CAAACGAAATG--TGCGCA---ACCCTTTGCACCTTAAG-TGGTCGTT??----?GGATGCGTTACTTTGCTCAATCAAATTT-ACAACGACTCTCGGCAACG------------------------------------ACAAATCCCCAAC
		Empleuridium_juniperinum        TCGAAACCTGCAA-GGCAGA--ACAACCCGCGAATTCGTTAAANNNNNNNNCGCGGACGGCGTGCCCCCGGGCAAGTCGTCCGAAGTCCNNNNNNNNGGTCGGGTCTGTGNNNNNNNNNAATCCACCTCCCGTGCC---------NNNNNNNNNNNNAACAA--CAAACCCGGGCGCGAATTGCGCCAAGGAACAAGAAAAANNNNNNNNNNNNNNNNNNCCTTTGTCCCGGAAA-CGGT-GNNNNNNNGGGGTTG---????GTCGTTACCAAGTNNNNGAAACGACTCTCGGCAACGGATATCT-----------------------------AC?A??CA?CCA?
		Dicarpellum_pancheri            TCGAAACATG?-----CAGA--ACGACCCGTGAATCGATGATCNNNNNNNNCGCGGGGGGCTGGCCTTCGGGCCCGTCGTCCGAAGTCCNNNNNNNNGGCGAGGGCTGTTNNNNNNNNNATCCCAACTCCCCTGCC---------NNNNNNNNNNNNAACAA--CAAACCCCGGCGCGAGTTGCGCCAAGGAATCGAAAGAANNNNNNNNNNNNNNNNNNCTCTCGTCCTGGAAA-CAGT-GNNNNNNNGGGGTTGCTTCGTCGTCGATAACGTATNNNNG??-TGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAA-CGTAGC?C?A??CA?CCA?
		Canotia_holacantha              TCGAACCCTGCAA-AGCAGA--AGGACCCGCGAACAAGTGAAANNNNNNNNATGGGTGGCGGAGCCTTTGGGCTAGCCG??---?AACGNNNNNNNNCTTAGGGGCTGTGNNNNNNNNNACTGCAACCCCTTTGCT---------NNNNNNNNNNNNCTAAA--CGAACCCCGGCGCGAATTGCGCCAAGGAACCAAAAGAANNNNNNNNNNNNNNNNNNCCCTCGTCCCGGAAA-CGGT-GNNNNNNNGGGAGATTGCATCGTCGTTGATATCACNNNNGAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGA-----------AC?A??CA?CCA?
		Brexia_madagascariensis         TCGAAACCTGCGA-GGCAGA--ACGACCCGTGAATCGGTAAAANNNNNNNNCTAGGGAGGCAGGCCTCAGGGTTTGTCGCCCGAAGTCGNNNNNNNNGGCATCGGCTGTGNNNNNNNNNACCACAACTTCTGTTGA---------NNNNNNNNNNNNAACAA?-AAAACCCCGGCGCAGATCGCGCCAAGGAACCAAGAAAANNNNNNNNNNNNNNNNNNCCCTTGTCTCGGAAA-CGGT-GNNNNNNNGGGATG----CGTCGTCGTTATCATAANNNNGAAACGACT-TCGGCAAC-------------------------------------AC?A???A?CCA?
		Zinowiewia_concinna             TCGAAACCTGCCC-AGCAGA--ACGACCTGTGAATCGGTTATTNNNNNNNNTGTAGTCGCCAAGCTTT--??CAAGGTGGCTGCTAGTTNNNNNNNNGATGGGAGTTGGGNNNNNNNNNACACTCATGCTCCCAGC---------NNNNNNNNNNNNAACAA--CGAACCCCGGCGCGAACTGCGCCAAGGAAACACAAAAANNNNNNNNNNNNNNNNNNCCCTAGTCCCAGAAA-CGGT-GNNNNNNNGGTTTTGCGTAGTCGTTGACGCCTTAANNNNAAAATGACTCTCGGCAACGGA----------------------------------CC?A??CA?CCA?
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 348 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
CHARSET ITS_gap_14 = 336 ; 
 CHARSET gap 21-22 = 337 ; 
 CHARSET gap 45-46 = 338 ; 
 CHARSET gap 60-64 = 339 ; 
 CHARSET gap_93 = 340 ; 
 CHARSET gap 137-145 = 341 ; 
 CHARSET gap 163-164 = 342 ; 
 CHARSET gap_196 = 343 ; 
 CHARSET gap 216-218 = 344 ; 
 CHARSET gap_236 = 345 ; 
 CHARSET gap_241 = 346 ; 
 CHARSET gap_265 = 347 ; 
 CHARSET gap_280 = 348 ; 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;