NEXUS
[File created by TreeBASE:  7/26/07  21:09:15]
[Matrix accession#: M2903]

BEGIN TAXA;
	TITLE M2903;
	DIMENSIONS  NTAX=6;
	TAXLABELS
		Catenulifera_rhodogena_305ITS	Catenulifera_rhodogena_412ITS	Catenulifera_rhodogena_328ITS	Hyphodiscus_hymeniophilus	Catenulifera_rhodogena_410ITS	Catenulifera_rhodogena_411ITS
	;
END;

BEGIN CHARACTERS;
	TITLE M2903;
	DIMENSIONS NCHAR=979;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Catenulifera_rhodogena_305ITS       GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGCTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTGGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
		Catenulifera_rhodogena_412ITS       GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGCTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTGGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTCCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
		Catenulifera_rhodogena_328ITS       GGATCATTACAGAGTTCATGCCCTGACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGCCGCGGAGGTACGCC-TCTCCACCGGCTTAGGCTGGTGTGCGCCCGCCAGAGGATCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATACAATAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCCTCAAGCCTGGCTTGGTATTGGGCTCTCGCCGCTGACCCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACACGGAGGTCACTGGCCAGCAACCCCCAACCTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCG-CGCGACTCTTCTCCC-ACTGCGCGACATCAATATCTCAAAGACTGACAAATACAGGCAAACTATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTGAGTGATTTCTGCAGCGACACTCGAGGTCGTCTTTACAACATGGCTCAACTGAC--GATTTGCAGGTACAATGGCACGTCTGATCTCCAACTCGAGCGGATGAATGTCTACTTCAATGAGGTATATATAGATATCAATACGCGTAATAATATCAAAACTGATGGGTCAACTAGGCTTCCGGCAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATTTGGAGCCGGGTACCATGGATGCCGTTCGTGCTGGTCCATTCGGGCAACTCTTCCGCCCCGACAACTTTGTCTTCGGTCAATCTGGTGCTGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
		Hyphodiscus_hymeniophilus           GGATCATTACAGAGTTCATGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGCAGAGGCTCGCC-TCTCCACCGGCTTCGGCTGGTGTGTGCCCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACTC-TCAAGCCTGGCTTGGTATTGGGCTCTCGCCGTTAACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGTAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTAGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGA????????TAATAGGTGCCGCTTTCTGGTGTGTTTTCCTCGCCGCGACTTTTCTCCCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACTATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTTTGCGGCGACACTCGAGGTCGTCATCACAATTTTGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTCCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATATAGACATCAACACGCGTAATAACATCGAAACTGATGGGTAAACTAGGCTTCTGGCAACAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACTATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAA???????????????????????????????
		Catenulifera_rhodogena_410ITS       GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGCTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTATTGGT-AGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
		Catenulifera_rhodogena_411ITS       GGATCATTACAGAGTTCGTGCCCTAACGGGTAGATCTCCCACCCTGTGTTATTATTACCATGTTGCTTTGGCGGGACGTAGAGGCTCGCCCTCTCCACCGGCTTCGGGTGGTGTGTGACCGCCAGAGGACCCAAAACCCTGAATATTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCC-TCAAGCTCGGCTTGGTATTGGGCTCTCGCCGTTCACGCGGCGGGCCTTAAAATCAGTGGCGGTGCCGTCGTGGCCCTGAGCGCAGTAAATATCCTCGCTATAGGGACCCGGTGGTTACTGGCCAGCAACCCCCAACTTTCTAAGTTTGACCTCGGATGGTAACCAAATCGGTGCTGCTTTCTGGTGTGTTTTCCTCGTCGCGACTTTTCTCTCCACTGCGCGACAACGATACCTCAGAGACTGACAAATACAGGCAAACGATCTCAGGCGAGCATGGTCTCGATGGCTCCGGCGAGTAAGTGATTTCTGCGGCGACACTCGAGCTCGTCATCACAAATTCGCTTAACTGACACGATTTGCAGATACAATGGCACGTCTGATCTTCAACTCGAACGGATGAATGTCTACTTCAACGAGGTATATACAGACATCAACACGCGTAATAACATCAAAACTGATGAGTCAACTAGGCTTCTGGAAATAAGTATGTTCCTCGTGCCGTTCTCGTCGATTTGGAGCCAGGTACCATGGATGCCGTTCGCGCTGGTCCATTCGGTCAACTCTTCCGTCCCGACAACTTCGTCTTCGGTCAATCTGGAGCCGGTAACAACTGGGCCAAGGGTCACTACACTGAGGGT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 979 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
CHARSET ITS = 1 - 497 ; 
 CHARSET bt = 498 - 979 ; 
 CHARPARTITION Wendy = a: 1 - 497 , b: 498 - 979 ; 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS gapmode = newstate ; 
 END;