#NEXUS [written Mon Aug 19 10:08:51 CST 2013 by Mesquite version 2.75 (build 564) at yunxia-PC/210.29.141.243] BEGIN TAXA; TITLE ANP; DIMENSIONS NTAX=28; TAXLABELS Tursiops_truncatus Sousa_chinensis Grampus_griseus Delphinapterus_leucas Neophocaena_phocaenoides Lipotes_vexillifer Mesoplodon_densirostris Kogia_simus Balaenoptera_acutorostrata Balaenoptera_omurai Bos_taurus Sus_scrofa Equus_caballus Felis_catus Erinaceus_europaeus Pteropus_vampyrus Myotis_lucifugus Gorilla_gorilla Homo_sapiens Macaca_mulatta Callithrix_jacchus Otolemur_garnettii Rattus_norvegicus Dipodomys_ordii Mus_musculus Dasypus_novemcinctus Loxodonta_africana Procavia_capensis ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ANP.nexus"'; DIMENSIONS NCHAR=459; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Tursiops_truncatus ATGGGCTCCGCC---ACCATCGCCGCGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTATGCCCCAACAAGTACTAAGCGATCAGAATGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCCACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGTGGCCCCTGGGAACCCTCCGATAGATCTGCCCTCCTGAACAGCAAGCTGAGGGCGCTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGCAACAGCTTCCGGTAC Sousa_chinensis ATGGGCTCCGCC---ACCATCGCCGCGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTATGCCCCAACAAGTACTAAGCGATCAGAATGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCCACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGTGGCCCCTGGGAACCCTCCGATAGATCTGCCCTCCTGAACAGCAAGCTGAGGGCGCTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGCAACAGCTTCCGGTAC Grampus_griseus ATGGGCTCCGCC---ACCATCGCCGCGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTATGCCCCAACAAGTACTAAGCGATCAGAATGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCCACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGTGGCCCCTGGGAACCCTCCGATAGATCTGCCCTCCTGAACAGCAAGCTGAGGGCGCTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGCAACAGCTTCCGGTAC Delphinapterus_leucas ATGGGCTCTGCC---ACCATCGCCGCGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTGTGCCCCAACAAGTACTAAGCGATCAGAATGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCCACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCCCCTGGGAACCCTCCGATACATCTGCCCTCCTGAACAGCAAGCTGAGGGCGCTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGTGGACTGGGCTGCAACAGCTTCCGGTAC Neophocaena_phocaenoides ATGGGCTCTGCC---ACCATCGCCGCGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAGACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTGTGCCCCAACAAGTACTAAGCGATCAGAATGAAGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCCACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCCCCTGGGAACCCTCCGATAGATCTGCCCTCCTGAACAGCAAGCTGAGGGCGCTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGTGGACTGGGCTGCAACAGCTTCCGGTAC Lipotes_vexillifer ATGGGCTCCGCC---ACCATCGCCACGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATCTGGAGGACAAGATGCCTTTAGAAGATGAGGCTGTGCCCCAACAAGTACTAAGTGAGCAGAATGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGATGCCTCCCTGGACCGGGGAGGTCCACCCAGCCCAGAGAGATGAGGGTGCCCTTGGGCGGGGCCCCTGGGAAGCCTCCGATAGATCTGCCCTCCTGAACAGCAAGCTGAGGGCGCTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGTAACAGCTTCCGGTAC Mesoplodon_densirostris ATGGGCTCCGCC---ACCATCGCCACGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGCTGCCTTTAGAAGATGAGGCTGTGCCCCAACAAGTACTAAGTGAGCAGAATGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCAACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCCCCTGGGAAACCTCCGATAGATCTGCCCTCCTGAAGAGCAAGCTGAGGGCACTGCTC---GCTGCCCCTCGGAGCCTGAGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGCAACAGCTTCCGGTAC Kogia_simus ATGGGCTCCGCC---ACCATCGCCACGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTGTGCCCCAACAAGTACTAAGTGAG---------------GGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCAACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCCCCTGGGAACCCTCCGATAGATCTGCCCTCCTGAAGAGCAAGCTGAGGGCACTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGCAACAGCTTCCGGTAC Balaenoptera_acutorostrata ATGGGCTCCGCC---ACCATCGCCACGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGAAGAGGTTGTGCCCCAACAAGTACTAAGTGAGCAGCGTGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCAACCCGGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCCCCTGGGAATCCTCCGATAGATCTGCCCTCCTGAAGAGCAAGCTGAGGGCACTGCTC---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGAAGGATGGACAGGATTGGAGCCCAGAGCGGGCTGGGCTGCAACAGCTTCCGGTAC Balaenoptera_omurai ATGGGCTCCGCC---ACCATCGCCACGAGCTTCCTCCTCTTTCTGGCGTTTCAGCTCCCAGGGCAAACCGGAGCGAACCCCGTGTATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAACTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGAAGAGGCTGTGCCTCAACAAGTACTAAGTGAGCAGCATGAGGAAGCTGGGGTCCCTCTCAGCCCCCTTTCTGAGGTGCCTCCCTGGACCGGGGAGGTCAACCCGGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCCCCTGGGAATCCTCCGATAGATCTGCCCTCCTGAAGAGCAAGCTGAGGGCACTGCTC---ACTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGAGGCAGGATGGACAGGATTGGAGCCCAGAGCGGGCTGGGCTGCAACAGCTTCCGGTAC Bos_taurus ATGGGCTCCTCC---GCCATCACCGTGAGCTTCCTCCTCTTTCTGGCATTTCAGCTCCCAGGGCAAACAGGAGCAAATCCCGTGTATGGCTCTGTGTCCAATGCAGACCTGATGGATTTCAAGAATTTGCTGGACCGTTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTGTGCCCTCACAAGTACTAAGTGAGCAGAATGAAGAAGCTGGGGCCCCTCTCAGCCCCCTTTCAGAGATGCCTCCCTGGATGGGGGAGGTCAACCCAGCCCAGAGAGAGGGGGGCGTCCTCGGGCGGGGCCCCTGGGAATCCTCCGATAGATCTGCCCTCCTGAAGAGCAAGCTGAGGGCACTGCTC---ACTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGAAGGATGGACAGGATTGGAGCCCAGAGTGGATTGGGCTGCAACAGCTTCCGGTAT Sus_scrofa ATGGGCTCCTCC---ACCATCACCGTGAGCTTCCTCCTCGTTCTGGTGTTTCAGTTCCCAGGGCAAACCAGAGCGAACCCTGTGTACGGCTCCGTGTCCAATGCAGACCTGATGGATTTCAAGAATTTGCTGGACCACTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTATGCCCCCACAAGTACTAAGCGAGCAGAATGAGGAAGTGGGGGCCCCTCTCAGCCCCCTTTTGGAGGTACCTCCCTGGACCGGGGAGGTGAACCCAGCCCAGAGAGATGGGGGTGCCCTGGGGCGGGGCCCCTGGGACGCTTCCGATAGATCTGCCCTTCTGAAGAGCAAGCTGAGGGCACTGCTT---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGTAGGATGGACAGGATTGGAGCACAGAGTGGACTGGGCTGTAACAGCTTCCGGTAC Equus_caballus ATGGGCTCCTTCTCCACCATCATGGCGAGCTTCCTCCTCTTTCTGGCATTTCAGCTCCAAGGGCAAACCAGAGCTAACCCCGTGTATGGCTCTGTGTCCAACGGAGACCTGATGGATTTCAAGAATTTGCTGGATCGTTTGGAGGACAAGATGCCTTTAGAAGATGAGGTGATGCCCCCACAAGTACTAAGTGATCAGAGTGAGGAAGAGAGGGCAGCTCTCAGCCCCCTCCCTGAGGTGCCTCCCTGGACCGGGGAGGTCAATCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCTCCTGGGACTCCTCCGACAGATCTGCCCTCCTGAAAAGCAAGCTGAGGGCACTGCTC---GCTGCTCCTCGGAGCCTACGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGTGGACTGGGCTGCAACAGCTTCCGGTAC Felis_catus ATGGGCTCCTTCTCCACCATCACCGCGAGCTTCCTCCTCTTCCTGGCGTGTCAGCTCTTGTGGCAAACAGGAGCTAACCCGGTATATGGCTCTGTGTCCAACGCAGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAAGTCGTGCCCCCACAAGTACTAAGTGAGCAGAATGAGGAAGCTGGGGCAGCTCTTAGCCCCCTCCCTGAGGTGCCTCCCTGGGCTGGGGAGGTCAACCCAGCCCAGAGAGATGGGGGTGCCCTTGGGCGGGGCTCCTGGGACTCCTCCGATAGATCTGCCCTCCTGAAAAGCAAGCTGAGGGCACTGCTA---GCTGCCCCTCGGAGTCTGCGGAGG---TCCAGCTGCTTTGGAGGAAGGATGGACAGGATTGGAGCTCAGAGTGGACTGGGCTGCAACAGCTTCCGGTAC Erinaceus_europaeus ATGGGCCCCTTCTCCACCATCGTTATGAGTGTCCTCCTCTTCCTGGCTCTCCAGCTCCCGGGACCAGCAAGTGCCACCCCCATGTACAGTGCCGTGCCCAGCGCAGACCTGATGGAGTTCAAGAACTTGCTGGACCTTCTTGAGGAGAAGATGCCTTTGGAGGATGAGGTG---CCCGGACAGGTGCTGAGTGAGCAGAGTGAGGAGGCAGCGGGTTCGTTCAGCCCCCTCCCCGAGGTGCCTCCCTGGACTGGAGAGGTCAGTCCGGTCCAGAGAGATGGAGGTGCCCTTGGGCGGGGCCCCTGGAACCCCTCTGACAGATCTGCACTCCTTAAAAACAAGCTGAGGGCCCTGCTCAACACCGCCCCCCGGAGCCTAAGGAGG---TCCAGCTGCTTCGGCGGCAGGATGGACCGGATTGGAGCCCAGAGTGGATTGGGCTGCAACAGCTTCCGG--- Pteropus_vampyrus ATGGGCTCCTTCTCCACCATCACCACGAGCTTCCTCCTCCTTCTGGTGCTGCAGCTCCCAGGGCAAATCACCGCTAACCCTCTGTACAGTTCCGTGTCCAACGCCGACGTGATGGATTTCAAGAATTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGTTGTGCCCCCACAAGTCCTAAGTGAGCAGAATGAGGAAGCTGAGGCAGCCCTCGGCCCCCTCCCTGAGGTGCCTCCCTGGACCGGAGAGGTTAGCCCAGCCCAGAGAGATGGCGGCACCCTTGGGCGGGGCCCCTGGGACTCCTCCGATAGATCTGCTCTCCTGAAAAACAAGCTGAGGGCACTGCTT---GCTGCCCCTCGGAGTCTGCGAAGG---TCCAGCTGCTTTGGGGGCAGGATGGACAGGATCGGAGCCCAGAGCGGACTCGGCTGCAACAGCTTCCGGTAC Myotis_lucifugus ATGGGCTCCTTCTCCACCATCACCGCCAGCTTCCTCCTCCTCCTGGCGGTCCAGCTCCCAGGGCAGACCAGAGCCAACCCCGTGTACAGCTCCGTGGCCAACGCCGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAGGACAAGATGCCGCTAGAAGATGAGGTCATGCCCCCACAAGTACTAAGCGAGCAGAACGAGGAAGCTGGGGCAGCGCTCAGCCCCCTCCCTGAGATGTCTCCCTGGACGGGGGAGGTCAACCCAGCCCCGCGAGAGGGGGGTGCCCTTGGGCGGGGCCCCTGGGACTCCTCCGACAGGTCCGCCCTCCTGAAAAACAAGCTGAGGGCGCTGCTC---GCTGCCCCTCGCAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATCGGAGCCCAGAGCGGCCTGGGCTGCAACAGCTTCCGGTAC Gorilla_gorilla ATGAGCTCCTTCTCCACCACCACCGTGAGCTTCCTCCTTTTACTGGCATTCCAGCTCCTAGGTCAGACCAGAGCTAATCCCATGTACAATGCCGTGTCCAATGCAGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAAGAAAAGATGCCTTTAGAAGATGAGGTCGTGCCCCCACAAGTGCTCAGTGAGCAGAATGAAGAAGTGGGGGCTGCTCTCAGCACCCTCCCTGAGGTGCCTCCCTGGACCGGGGAAGTCAGTGCAGCCCAGAGAGATGGAGGTGCCCTCGGGCGGGGCCCCTGGGACTCCTCTGATCGATCTGCCCTCCTAAAAAGCAAGCTGAGGGCGCTGCTC---ACTGCCCCTCGGAGCCTGCGGAGA---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGTAACAGCTTCCGG--- Homo_sapiens ATGAGCTCCTTCTCCACCACCACCGTGAGCTTCCTCCTTTTACTGGCATTCCAGCTCCTAGGTCAGACCAGAGCTAATCCCATGTACAATGCCGTGTCCAACGCAGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAAGAAAAGATGCCTTTAGAAGATGAGGTCGTGCCCCCACAAGTGCTCAGTGAGCCGAATGAAGAAGCGGGGGCTGCTCTCAGCCCCCTCCCTGAGGTGCCTCCCTGGACCGGGGAAGTCAGCCCAGCCCAGAGAGATGGAGGTGCCCTCGGGCGGGGCCCCTGGGACTCCTCTGATCGATCTGCCCTCCTAAAAAGCAAGCTGAGGGCGCTGCTC---ACTGCCCCTCGGAGCCTGCGGAGA---TCCAGCTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGTAACAGCTTCCGGTAC Macaca_mulatta ATGAGCTCCTTCTCCACCATCAGTGTGAGCTTCCTCCTTTTTCTGGCATTCCAGCTCCCAGGTCAGACCAGAGCTAATCCCATGTACAATGCCGTGTCCAACGCAGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAAGAAAAGATGCCTTTAGAAGATGAGGTCGTGCCCCCACAAGTGCTCAGAGAGCAGAATGAAGAAGCGGGGGCTGCTCTCAGCCCCCTCCCTGAGGTGCCTCCCTGGACCGGGGATGTCAGCCCAGCCCAGAGAGATGGGGGTGCCCTCGGGCAGAGCCCCTGGGACTCCTCCGATCGATCTGCCCTCTTAAAAAGCAAGCTGAGGGCGCTGCTC---ACTGCCCCTCGGAGCCTGCGGAGA---TCCAGTTGCTTCGGGGGCAGGATGGACAGGATTGGAGCCCAGAGCGGACTGGGCTGTAACAGCTTCCGGTAC Callithrix_jacchus ATGGGCTCCTTCTCCACTGTCACCGTGAGCTTCCTCTTCTTTCTGGCATTCCAGCTTCCAGCTCAGACCAGAGCTAACCCCGTGTACAATGCCATGTCCAACGCAGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAAGAAAAGATGCCTTTAGAAGATGAGGTCGTGCCCCCACAAGTGCTCAGTGAGCAGAATGAAGAAGCGGGGGCTGCCCTCAGCCCCCTCCCTGAGGTGCCTCCCTGGACTGGGGATGTCAGCCCAGCCCAGAGAGATGGGGGTGCCTTCGGGCGGGGCCCCTGGGACTCCTCCGATAGATCTGCGCTCCTAAAAAGCAAGCTGAGGGCGTTGCTC---ACTGCCCCACGGAGCCTGCGGAGA---TCCAGTTGCTTTGGGGGCAGGATGGACAGAATTGGAGCCCAGAGCGGACTGGGCTGTAACAGCTTCCGGTAC Otolemur_garnettii ATGGGCTCCTTCTGCGTCGCCACTGTGGGCTTCCTCCTCTTCCTGGCATTTCAGCTCCCAGGT---ATCAGAGCGAACCCCGTGTATAATGGCGTGTCCAGCGCAGACCTGATGGATTTTAAGAATTTGCTGGACCATTTGGAGGACAAGATGCCTTTAGAAGATGAGGCTGTGCCCCCAGAAGTTCTGAACGAGCAGAATGAGGAAACCGGGGCAGCTCTCAGCCCCCTCCCTGAGGTTCCTCCCTGGACTGGGGAGGTCAGCCCAGCCCAGAGAGATGGGGGTGCCCTGGGGCGGGGCCCCTGGGACTCCTCCGATAGGTCTGCTCTCCTGAAAAGCAAGCTGAGGGCACTGCTC---GCCGCTCCCCGGAGCCTGCGGAGG---TCCAGCTGCTTTGGGGGCAGGATGGACAGGATTGGA---CAGAGTGGACTGGGCTGCAACAGCTTCCGGTAC Rattus_norvegicus ATGGGCTCCTTCTCC---ATCACCAAGGGCTTCTTCCTCTTCCTGGCCTTTTGGCTCCCAGGCCATATTGGAGCAAATCCCGTATACAGTGCGGTGTCCAACACAGATCTGATGGATTTCAAGAACCTGCTAGACCACCTGGAGGAGAAGATGCCGGTAGAAGATGAGGTCATGCCTCCGCAGGCCCTGAGCGAGCAGACCGATGAAGCGGGGGCGGCACTTAGCTCCCTCTCTGAGGTGCCTCCCTGGACTGGGGAAGTCAACCCGTCTCAGAGAGATGGAGGTGCTCTCGGGCGCGGCCCCTGGGACCCCTCCGATAGATCTGCCCTCTTGAAAAGCAAACTGAGGGCTCTGCTC---GCTGGCCCTCGGAGCCTGCGAAGG---TCAAGCTGCTTCGGGGGTAGGATTGACAGGATTGGAGCCCAGAGCGGACTAGGCTGCAACAGCTTCCGGTAC Dipodomys_ordii ATGGGCTCCTTCTCCACCATCACCGTGAGCCTCCTCCTCTTCCTGGCCCTTCAGCTTCCAGACCAAACAGGCGCCAACCCCGTGTACAATACCGTGTCCAGTGCAGATCTGATGGACTTCAAGAATCTGCTGGACCAGTTGGAGGAGAAGATGCCGTTGGAAGAGGAGGCTGTGCCCCCACAAGGCCTGAGCGAGCAGAACGAAGAAGTGGGGGCGGCTCTCAGCTCTCTCCCTGAGGTCCCTCCCTGGACTGGGGAGGCTGGCCCAGTGCAGAGAGATGGGGGTGCCGTGGGGCGGAGCCTCTGGGACTCCTCCGAGCGCTCTGCCCTCCTGAAGAGCAAGCTGAGGGCATTGCTG---GCTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGAGGCCGGATGGACAGGATCGGAGCCCAGAGCGGGCTGGGCTGCAACAGTTTCCGGTAT Mus_musculus ATGGGCTCCTTCTCC---ATCACCCTGGGCTTCTTCCTCGTCTTGGCCTTTTGGCTTCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTGTCCAACACAGATCTGATGGATTTCAAGAACCTGCTAGACCACCTGGAGGAGAAGATGCCGGTAGAAGATGAGGTCATGCCCCCGCAGGCCCTGAGTGAGCAGACTGAGGAAGCAGGGGCCGCACTTAGCTCCCTCCCCGAGGTGCCTCCCTGGACTGGGGAGGTCAACCCACCTCTGAGAGACGGCAGTGCTCTAGGGCGCAGCCCCTGGGACCCCTCCGATAGATCTGCCCTCTTGAAAAGCAAACTGAGGGCTCTGCTC---GCTGGCCCTCGGAGCCTACGAAGA---TCCAGCTGCTTCGGGGGTAGGATTGACAGGATTGGAGCCCAGAGTGGACTAGGCTGCAACAGCTTCCGGTAC Dasypus_novemcinctus ATGGGCCTCTTCTCCACCGTCACCGCAGGCGTCCTTCTCTTTCTGGCATTTCAGATCCCAGGTCAAAGCAGAGCTAACCCTGTGTACAACCCTGTGTCCACCGCAGACCTGATGGATTTCAAGAATTTGCTGGACCATTTGGAGGAGAAGATGCCTTTGGAAGATGTGGTTATGCCCCCACAAGTACTAAGTGATCAGAATGATGACGCTGGGGCAGCTCTCAACCCCCTCCCCGAGGTGCCTCCCTGGACCGGGGAGCTCAACTCAGCCCAGAGAGAGGGGGGTGTCACTGGACGGGGCCCCTGGGACTCCTCCGAAAGATCTGCCCTTCTGAAAAACAAGCTGAGGGCACTGCTC---ACTGCCCCGCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATAGACAGAATTGGAGCTCAGAGTGGACTGGGGTGCAACAGCTTCCGGTAC Loxodonta_africana ATGGGCTCCTTCTCCACCATCACTGTGTGCTTCCTCCTCTTCCTGGCATTTCAACTCCCAGGTCAAATCAGAGCGAACCCTGTGTACACCTCCGTGTCCAATGCAGAC---ATGGATTTCAAGAATTTGCTGGACCGTTTGGAGGACAAGATGCCTTTAGAAGATGAGGTCGTGCCCCCACAAGTACTAAACGAGCAGAATGATGAGGCTGGGGTGGCTGTCAACCCCCTGCCTGAGGTGCCTCCCTGGACCAGGGAGGTCAGCCCAGCTCAGCGAGATGGGGGTGCTCTTGGGAGGGGCCCCTGGGACTCCTCCGAAAGATCTGCCCTCCTGAAAAACAAGCTGAGGGCACTACTC---ACTGCCCCTCGGAGCCTGCGGAGG---TCCAGCTGCTTCGGGGGCAGGATTGACAGGATTGGATCCCAGAGTGGCCTCGGCTGCAACAGTTTCCGGTAC Procavia_capensis ATGGGCTCCTTCTCTACCGTCACCATGGGTTTTCTTCTCTTCCTGGCATTTCAACTCCCGGGTGAAATCAGAGCAAACCCCTTGTACACCTCCATGTCCAATGCAGACCTGACAGATTTCAAGAATTTGCTGGACCGTTTGGAGGACAAGATGCCTTTAGAAGATGAGGTGGTGCCCCCCCAAGTACTAAATGAGCAGAATGATGAGGCTGAGGTGGCTCTGAGTTCTCTCCCTGAGATGCCTCCGTGGAACAGGGAGGTCAGCCCAGCCCAGCGAGAGGGGGCTGCCCTTGGCAGGGGCTCCTGGGATGACTCCGGAAGATCTGCTGTCCTGAAAAACAAGCTGCGGGCACTGCTC---ACCGCCCCTCGGAGCCTGCGGAGG---TCCAGTTGCTTTGGGGGCAGGATTGACAGGATTGGTGCCCAGAGTGGCCTTGGCTGCAACAGTTTCCGGTAC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 459; END; BEGIN TREES; Title 'Trees from "ANP.tree"'; LINK Taxa = ANP; TRANSLATE 1 Tursiops_truncatus, 2 Sousa_chinensis, 3 Grampus_griseus, 4 Delphinapterus_leucas, 5 Neophocaena_phocaenoides, 6 Lipotes_vexillifer, 7 Mesoplodon_densirostris, 8 Kogia_simus, 9 Balaenoptera_acutorostrata, 10 Balaenoptera_omurai, 11 Bos_taurus, 12 Sus_scrofa, 13 Equus_caballus, 14 Felis_catus, 15 Erinaceus_europaeus, 16 Pteropus_vampyrus, 17 Myotis_lucifugus, 18 Gorilla_gorilla, 19 Homo_sapiens, 20 Macaca_mulatta, 21 Callithrix_jacchus, 22 Otolemur_garnettii, 23 Rattus_norvegicus, 24 Dipodomys_ordii, 25 Mus_musculus, 26 Dasypus_novemcinctus, 27 Loxodonta_africana, 28 Procavia_capensis; TREE ANP_tree = (((15,((14,(13,(((8,(7,(6,((3,(1,2)),(4,5))))),(9,10)),(11,12)))),(16,17))),((24,(25,23)),(22,(21,(20,(18,19)))))),(26,(27,28)))[% ] [%unrooted = on ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 459; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 459; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1376878132018; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1964834882208585643; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3407387383478310077; mqVersion 275; checksumv 0 3 3995405429 null getNumChars 459 numChars 459 getNumTaxa 28 numTaxa 28 short true bits 15 states 15 sumSquaresStatesOnly 238587.0 sumSquares 238587.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; setActive; endTell; showWindow; endTell; endTell; endTell; end;