#NEXUS [written Mon Aug 19 10:12:32 CST 2013 by Mesquite version 2.75 (build 564) at yunxia-PC/210.29.141.243] BEGIN TAXA; TITLE AQP2; DIMENSIONS NTAX=27; TAXLABELS Spermophilus_tridecemlineatus Sus_scrofa Tursiops_truncatus Vicugna_pacos Bos_taurus Callithrix_jacchus Canis_familiaris Equus_caballus Felis_catus Gorilla_gorilla Homo_sapiens Loxodonta_africana Macaca_mulatta Macropus_eugenii Mus_musculus Ochotona_princeps Oryctolagus_cuniculus Pongo_pygmaeus Pteropus_vampyrus Rattus_norvegicus Balaenoptera_omurai Mesoplodon_densirostris Lipotes_vexillifer Neophocaena_phocaenoides Balaenoptera_acutorostrata Sousa_chinensis Delphinapterus_leucas ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "AQP2.nexus"'; DIMENSIONS NCHAR=606; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Spermophilus_tridecemlineatus ATGTGGGAGCTCCGGTCCATAGCCTTCTCCAGGGCCGTGTTCGCCGAGTTCCTGGCCACACTCCTCTTTGTCTTCTTTGGCCTGGGCTCAGCCCTCAACTGGCCGCAGGCCCAACCCTCTGTGCTGCAGATCGCCATGGCCTTCGGCCTAGGCATCGGCACCCTGGTACAAGCTCTGGGCCAGGTCAGCGGGGCCCACATCAACCCTGCTGTGACTGTAGCCTTCCTGGTGGGCTGCCACGTGTCCTTCCTCCGGGCTGCCTTCTACCTGGCGGCCCAGCTGCTGGGGGCCGTGGCGGGGGCCGCTCTGCTCCATGAGATCACGCCAGCAGAAATCCGCGGGGACCTAGCTGTCAATGCT?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCTACTACACTGGCTGCTCCATGAATCCTGCCCGTTCCCTGGCTCCGGCCATCGTCACCGGCAAGTTTGACGACCACTGG Sus_scrofa ATGTGGGAACTCCGCTCCATAGCCTTCTCCCGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCCTCTTTGTCTTCTTCGGCCTCGGCTCGGCCCTCAACTGGCCACAGGCCTTGCCTTCTGTGCTGCAGATTGCCATGGCCTTCGGCCTGGCGATCGGCACCCTGGTGCAGGCTCTGGGCCACATCAGCGGGGCCCACATCAACCCTGCCGTGACTGTAGCCTGCCTGGTGGGCTGCCATGTCTCCTTTCTCCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCGGCTCTGCTCCATGAGATCACACCGCCAGACATCCGAGGGGACCTGGCCGTCAACGCGCTCAGCAACAACTCAACCGCTGGCCAGGCAGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACCGATGAGCGCCGTGGGGACAACCTGGGCACCCCCGCCCTCTCCATTGGTTTCTCTGTGGCCCTGGGCCACCTTCTCGGGATCCACTACACTGGCTGCTCCATGAATCCTGCCCGCTCGCTGGCTCCAGCTGTTGTCATCGGCAAGTTTGATGACCACTGG Tursiops_truncatus ATGTGGGAACTCCGGTCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCGTCTTCGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTACTGCAGATTGCCATGGCCTTTGGCCTGGCTATCGGTACCCTGGTGCAGGCTCTGGGTCACGTCAGCGGGGCCCACATCAACCCTGCCGTGACCGTGGCCTGCCTGGTGGGTTGCCACATCTCCTTTCTCCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCCCTGCTCTCTGAGATCACACCACCAGACATCCGGGGGGACCTGGCAGTCAATGCTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCCGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCATCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACTGGCAAGTTTGACAACCACTGG Vicugna_pacos ATGTGGGAACTCCGGTCCATAGCCTTCTCCAGGGCAGTGTTAGCAGAGTTCCTGGCCACACAACTCTTTGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTGCTGCAGATTGCCATGGCCTTCGGCCTGGCTATTGGCACCCTGGTGCAGGCTCTGGGCCATGTCAGCGGGGCCCACATCAACCCCGCCGTGACTGTGGCCTGCCTGGTAGGCTGCCATGTCTCCTTTCTCCGAGCTGTCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCTGGGGCTGCTCTGCTCCATGAGATCACACCGCCAGACATCCGAGGGGACCTGGCTATCAATGCT?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATCCACTACACCGGCTGCTCCATGAACCCTGCCCGCTCCCTGGCTCCAGCTGTCGTCACCGGCAAATTCGATGATCACTGG Bos_taurus ATGTGGGAACTCCGGTCCATAGCCTTCTCCAGGGCAGTGCTTGCAGAGTTCCTGGCCACACTCCTCTTTGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTGCTGCAGATCGCCATGGCCTTCGGTCTGGCTATCGGCACCCTGGTGCAGGCTCTGGGCCATGTCAGTGGGGCCCATATCAACCCCGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCACGTCTCCTTTCTCCGCGCTGTCTTCTATGTGGCCGCCCAGCTGCTGGGGGCTGTGGCCGGGGCCGCCCTGCTCCATGAGATCACACCACCAGCTATCCGAGGGGACCTGGCTGTCAATGCCCTCAACAACAACTCGACAGCCGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACACTGCAGCTCGTGCTCTGTATCTTCGCCTCCACTGACGAGCGCCGTGGAGACAACGTGGGCACCCCTGCCCTCTCCATCGGGTTCTCTGTGGCCCTGGGCCACCTCCTTGGGATCCACTACACTGGCTGCTCCATGAATCCCGCCCGCTCCCTGGCTCCAGCTATCGTCACCGGCAAGTTTGACGACCACTGG Callithrix_jacchus ATGTGGGAGCTCCGCTCCATAGCCTTTTCCAGGGCCGTGTTCGCAGAGTTCCTGGCCACGCTCCTCTTTGTCTTCTTTGGCCTCGGCTCGGCCCTCAACTGGCCACAGGCCCTGCCCTCTGTGCTACAGATCGCCATGGCATTTGGCCTGGGTATCGGCACCCTGGTACAGGCTCTAGGCCATGTTAGTGGGGCCCACATCAACCCCGCCGTGACTGTGGCCTGCCTAATAGGCTGCCATGTCTCCTTTCTCCGAGCCGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCTGTGGCCGGGGCCGCTCTGCTCCATGAGATCACACCAGCAGACATCCGTGGGGACCTGGCTGTCAACGCTCTCAGCAACACCACAACGGCTGGCCAGGCTGTGACAGTGGAGCTCTTCCTGACACTGCAGCTGGTGCTCTGCATCTTTGCCTCCACCGATGAGCGCCGTGGAGAGAACCCGGGCACCCCTGCTCTCTCCATAGGCTTCTCCGTGGCCCTGGGCCACCTCCTCGGGATCCACTACACCGGCTGCTCTATGAATCCTGCTCGCTCCCTGGCTCCAGCTGTCGTCACTGGCAAATTTGATGACCACTGG Canis_familiaris ATGTGGGAACTGCGCTCCGTAGCCTTCTCCAGGGCGGTGTTCGCCGAGTTCCTGGCCACGCTGCTCTTCGTCTTCTTCGGCCTCGGCTCAGCCCTCAACTGGCCGCAGGCCCTGCCGTCCGTGCTGCAGATCGCCATGGCCTTCGGCCTGGGCATCGGCACCCTGGTGCAGGCCCTGGGCCACGTGAGCGGGGCCCACATCAACCCGGCCGTGACGGTGGCCTGCCTGGTGGGCTGCCACGTGTCCTTTCTCCGGGCTGCCTTCTACGTGGCCGCGCAGCTGCTGGGGGCCGTGGCAGGGGCTGCTCTGCTCCACGAGATCACGCCACCGCACGTTCGAGGGGACCTGGCTGTCAACGCACTCAGCAACAATACAACAGCTGGCCAGGCTGTCACCGTGGAGCTTTTCCTGACCCTGCAGTTGGTGCTCTGCATCTTCGCTTCCACGGATGAACGGCGTGGAGACAACCTGGGCACCCCTGCCCTCTCCATCGGTTTCTCTGTGGCCCTGGGCCACCTCCTTGGGATCCACTACACCGGCTGCTCCATGAATCCGGCCCGCTCCCTGGCTCCTGCTGTTGTCACCGGCAAGTTTGACGACCACTGG Equus_caballus ATGTGGGAGCTCCGGTCCATAGCCTTCTCCAGGGCCGTGCTTGCAGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTTGGCTCAGCCCTCAACTGGCCACAGGCCATGCCCTCTGTCCTGCAGATTGCCATGGCCTTCGGCCTGGCTATCGGCACCCTGGTACAGGCTCTGGGCCATGTCAGTGGGGCCCACATCAACCCCGCCGTGACTGTGGCCTGTCTGGTGGGCTGCCACGTCTCCTTTCTCCGAGCTGCCTTCTATGTGGCTGCCCAGCTGCTGGGGGCCGTGGCAGGGGCTGCTCTACTCCACGAGATCACACCACCCGACATCCGAGGGGACCTGGCTGTCAACGCACTCAGCAACAGCACAACAGCTGGCCAGGCCGTGACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACCGATGAGCGCCGTGGAGACAACCTGGGCACCCCTGCCCTCTCCATCGGCTTCTCTGTGGTCGTGGGCCACCTCCTCGGGATCCCCTACACTGGCTGCTCCATGAATCCTGCCCGCTCCCTGGCTCCAGCTGTCATCACCGGCAAGTTTGATGACCATTGG Felis_catus ATGTGGGAACTCCGGTCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTCGGCTCGGCCCTCAACTGGCCAAAGGCTCTGCCTTCTGTGCTGCAGATCGCCATGGCCTTCGGCCTGGGTATCGGCACCCTGGTGCAGGCTCTGGGCCACGTCAGTGGGGCTCACATCAATCCTGCCGTGACTGTGGCCTGCCTAGTAGGCTGCCATGTCTCCTTTCTCCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCAGGGGCTGCCCTGCTCCATGAGATTACGCCACCAGACATCCGAGGGGACCTGGCTGTTAATGCACTCAACAACAACACGACAGCTGGCCAGGCCGTTACCGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTTGCTTCCACAGACGAGCGTCGCGGAGACAACCTGGGCACGCCTGCCCTCTCCATCGGTTTTTCTGTGACCCTGGGCCACCTCCTTGGGATCTACTACACTGGCTGCTCTATGAATCCCGCCCGCTCCCTGGCTCCTGCTGTTGTCACCGGCAAGTTTGATGACCACTGG Gorilla_gorilla ATGTGGGAGCTCCGCTCCATAGCCTTCTCCAGGGCTGTGTTCGCAGAGTTCCTGGCCACACTCCTCTTTGTCTTCTTTGGCCTCGGCTCGGCCCTCAACTGGCCACAGGCCCTGCCCTCTGTGCTACAGATTGCCATGGCGTTTGGCTTGGGTATTGGCACCCTGGTACAGGCTCTGGGCCACATAAGCGGGGCCCACATCAACCCCGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCACGTCTCCCTTCTCCGAGCCGCTTTCTACGTGGCTGCCCAGCTGCTGGGGGCTGTGGCCGGAGCCGCTCTGCTCCATGAGATCACGCCAGCAGACATCCGCGGGGACCTGGCTGTCAATGCTCTCAGCAACAGCACGACGGCTGGCCAGGCGGTGACTGTGGAGCTCTTCCTGACACTGCAGCTGGTGCTCTGCATCTTCGCGTCCACCGATGAGCGCCGCGGAGAGAACCCGGGCACCCCTGCTCTCTCCATAGGCTTCTCCGTGGCCCTGGGCCACCTCCTTGGGATCCATTACACCGGCTGCTCTATGAATCCTGCCCGCTCCCTGGCTCCAGCTGTCGTCACTGGCAAATTTGATGACCACTGG Homo_sapiens ATGTGGGAGCTCCGCTCCATAGCCTTCTCCAGGGCTGTGTTCGCAGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTCGGCTCTGCCCTCAACTGGCCACAGGCCCTGCCCTCTGTGCTACAGATTGCCATGGCGTTTGGCTTGGGTATTGGCACCCTGGTACAGGCTCTGGGCCACATAAGCGGGGCCCACATCAACCCTGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCACGTCTCCGTTCTCCGAGCCGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCTGTGGCCGGAGCCGCTCTGCTCCATGAGATCACGCCAGCAGACATCCGCGGGGACCTGGCTGTCAATGCTCTCAGCAACAGCACGACGGCTGGCCAGGCGGTGACTGTGGAGCTCTTCCTGACACTGCAGCTGGTGCTCTGCATCTTCGCCTCCACCGATGAGCGCCGCGGAGAGAACCCGGGCACCCCTGCTCTCTCCATAGGCTTCTCTGTGGCCCTGGGCCACCTCCTTGGGATCCATTACACCGGCTGCTCTATGAATCCTGCCCGCTCCCTGGCTCCAGCTGTCGTCACTGGCAAATTTGATGACCACTGG Loxodonta_africana ATGTGGGAGCTCCGGTCCATAGCCTTCTCCAGGGCCGTGTTCTCCGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTTGGCTCAGCCCTCAACTGGCCGCAGGCCCTGCCCTCTGTGCTACAGATCGCCATGGCTTTCGGCCTGGCTATCGGCACCCTGGTGCAGACTCTGGGCCACATCAGCGGGGCCCACATCAACCCTGCTGTGACTGTAGCCTGCCTCGTGGGCTGCCACGTCTCCTTTCTCCGAGCCACCTTCTACTTGGCTGCCCAGCTGCTGGGGGCTGTGGCAGGAGCCGCCCTACTCCATGAGCTTACGCCACCAGATATCCGTGGGGACCTGGCTGTTAATGCGCTCAGCAACAACACAACGGTTGGCCAGGCTGTGACTGTGGAGCTCTTCCTGACGCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACCGATGACCGCCGCGGAGACAACCTGGGCACCCCTGCCCTCTCCATCGGCTTCTCCGTGGCCCTGGGCCACCTCCTTGGGATCCACTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCCATCATCACCGGCAAGTTTGATGACCACTGG Macaca_mulatta ATGTGGGAGCTCCGCTCCATAGCCTTCTCCAGGGCTGTGTTTGCAGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTCGGCTCGGCCCTCAACTGGCCACAGGCCCTGCCCTCTGTGCTACAGATCGCCATGGCATTTGGCTTGGGTATTGGCACCCTGGTACAGGCTCTGGGCCACATAAGCGGGGCCCACATCAATCCAGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCATGTCTCCTTTCTCCGAGCCACCTTCTACGTGGCTGCCCAGCTGCTGGGGGCTGTGGCCGGAGCCGCTCTGCTCCATGAGATCACGCCAGCAGACATCCGCGGGGACCTGGCTGTCAATGCTCTCAGCAACAGCACGACAGCTGGCCAGGCGGTGACTGTGGAGCTCTTCCTGACGCTGCAGCTGGTGCTCTGCATCTTTGCCTCCACCGATGAGCGCCGTGGAGAGAACCCGGGCACCCCTGCTCTCTCCATAGGCTTCTCCGTGGCCCTGGGCCACCTCCTGGGGATCCACTACACCGGCTGCTCTATGAATCCCGCCCGCTCCCTGGCTCCAGCTGTCGTCACTGGCAAATTTGATGACCACTGG Macropus_eugenii ATGTGGGAGTTGCGTTCCTTAGCCTTCTCTCGGGCTGTCTGTACAGAATTCTTGGCCACTCTCCTCTTTGTCTTCTTTGGCCTGGGGTCAGCCCTCGACTGGCCTCATGCTCAGCCTTCTGTCCTGCAGATCTCCCTTGCCTTTGGTCTGGCCATTGGCACCCTGGTGCAAACTTTGGGCCATGTGAGTGGAGCGCACATTAACCCAGCTGTGACTATAGCCTGTCTGGTGGGTTGCCATGTCTCCTTCCTCCGAGCTACTTTCTATGTGGCTGCCCAGATCCTGGGGGCTGTAGCTGGGGCTGCCATTCTCCACGAGCTCACCCCACCTGCCATCCGGGGGAATCTGGTCATCAATGAGCTCAGTAACAATACAACTGCTGGCCAAGCTGTCACCGTGGAGCTCTTCTTGACTCTGCAGTTGGTCCTCTGTATCTTTGCTTCCACTGATGATCGTCGAGAGGACAACATTGGCTCTCCAGCCCTCTCCATTGGCTTTTCAGTGGCTCTGGGCCACCTGTTGGGGATCCACTATACAGGCTGTTCCATGAATCCAGCCCGTTCCCTGGGCCCTGCTATCGTCGTGGGCAAGTTTGATGACCACTGG Mus_musculus ATGTGGGAACTCCGGTCCATAGCGTTCTCCCGAGCGGTGCTGGCCGAGTTCCTGGCCACGCTCCTTTTCGTCTTCTTTGGCCTTGGCTCAGCCCTCCAGTGGGCCAGCTCCCCACCCTCTGTGCTCCAGATTGCCGTGGCCTTTGGTCTGGGCATTGGCACCCTGGTTCAGGCTCTGGGCCATGTCAGCGGGGCCCACATCAACCCTGCTGTGACTGTGGCGTGCCTGGTGGGTTGCCATGTCTCCTTCCTTCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCCATCCTCCATGAGATTACCCCTGTAGAAATCCGCGGGGACCTGGCTGTCAATGCTCTCCACAACAATGCAACAGCCGGCCAGGCGGTGACTGTGGAGCTCTTCCTGACCATGCAGCTGGTGCTGTGCATCTTTGCCTCCACTGATGAGCGCCGCAGTGACAACCTGGGTAGCCCTGCTCTCTCCATTGGTTTCTCTGTTACCCTGGGCCACCTCCTTGGGATCTATTTCACCGGCTGCTCCATGAATCCAGCCCGCTCCCTGGCTCCAGCAGTTGTCACTGGCAAGTTTGATGATCACTGG Ochotona_princeps ATGTGGGAGCTCCGGTCCGTGGCTTTCTCCAGGGCCGTGTTCACAGAGTTCCTGGCCACCCTCCTCTTCGTCTTCTTCGGCCTCGGCTCGGCCCTCAACTGGCCTTCGATGCTGCCCTCCGTGCTGCAGATCGCAGTGGCCTTCGGCCTGGGCATCGGCACGCTGGTGCAGGCTCTGGGCCACATCAGCGGGGCCCACATCAACCCTGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCATGTCTCCTTTCTGCGTGCAGTCTTCTATGTGGCGGCCCAGCTGCTGGGGGCTGTGGCGGGGGCCGCTCTGCTCCACGAGATCACGCCAGCCAATATCCGCGGGGATCTGGGTGTCAACGCGCTCAACAACAACGCGACAGCCGGGCAGGCCGTGACCGTGGAGCTCTTCCTGACTCTGCAACTGGTGCTCTGTATCTTTGCCTCCACCGACAACCGCCGGGAGGACAACCTGGGCACCCCTGCCCTCTCCATCGGCTTCTCCGTGACCCTGGGCCACCTCCTGGGGATCTACTACACCGGCTGTTCCATGAACCCTGCCCGCTCCCTGGCCCCGGCCGTCGTCACCGGCAAGTTCGATGATCACTGG Oryctolagus_cuniculus ATGTGGGAGCTTCGGTCCATCGCCTTCTCCAGGGCGGTGTTTGCCGAGTTCCTGGCCACGCTCCTCTTTGTCTTCTTCGGCCTGGGCTCAGCCCTCAACTGGCCATCGGCGCTGCCTTCCACATTGCAGATCGCCATGGCTTTTGGCCTGGGCATCGGCACCCTGGTGCAGGCTCTGGGCCACGTCAGCGGGGCCCACATCAACCCTGCCGTGACCGTGGCCTGCCTGGTGGGCTGCCACGTCTCCTTCCTCCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCTCTGCTCCACGAGATCACGCCGGCCGAGGTCCGTGGCGACCTGGCTGTCAATGCCCTCAGCAACAACGCCACAGCTGGGCAGGCCGTGACCGTGGAGCTCTTCCTGACGCTGCAGCTGGTGCTCTGCATCTTTGCCTCCACCGACGATCGCCGCAGCGACAACGTGGGCACCCCTGCCCTTTCCATTGGCCTCTCGGTGACCCTGGGCCACCTCCTCGGGATCTACTACACCGGCTGCTCCATGAACCCTGCCCGCTCCCTGGCCCCCGCTGTCATCACCGGCAAGTTTGATGACCACTGG Pongo_pygmaeus ATGTGGGAGCTCCGCTCCATAGCCTTCTCCAGGGCTGTGTTCGCAGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTCGGCTCGGCCCTCAACTGGCCACAGGCCCTGCCCTCTGTGCTACAGATTGCCATGGCGTTTGGCTTGGGTATTGGCACCCTGGTACAGGCTCTGGGCCACATAAGCGGCGCCCACATCAACCCCGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCACGTCTCCTTTCTCCGAGCCACCTTCTACGTGGCTGCCCAGCTGCTGGGGGCTGTGGCCGGAGCCGCTCTGCTCCATGAGATCACGCCAGCAGACATCCGCGGGGACCTGGCTGTCAATGCTCTCAGCAACAGCACGACGGCTGGCCAGGCGGTAACTGTGGAGCTCTTCCTGACACTGCAGCTGGTGCTCTGCATCTTTGCCTCCACCGATGAGCGCCGCGGAGAGAACCCGAGCACCCCTGCTCTCTCCATAGGCTTCTCTGTGGCCCTGGGCCACCTCCTTGGGATCCATTACACCGGCTGCTCTATGAATCCTGCCCGCTCCCTGGCTCCAGCTGTCGTCACCGGCAAATTTGATGACCACTGG Pteropus_vampyrus ATGTGGGAACTCCGATCCATAGCCTTCTCCAGGGCTGTGTTTGCAGAGTTCCTGGCCACACTCATCTTTGTCTTCTTCGGCCTAGGCTCAGCCCTCAACTGGCCACAGAACTTGCCCTCTGTGTTGCAGATTGCCATGGCCTTTGGCTTGGCTATCGGCACCCTTGTGCAGACTCTGGGACACATCAGCGGGGCCCACATGAACCCTGCTGTGACTGTGGCCTGCCTGGTGGGCTGCCATGTGTCATTTCTTCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGAGCTGTGGCAGGGGCTGCCCTGCTCCATGAGATCACACCCGCAAACGTCCAAGGAAACCTGGCTGTCAATGCTCTCCGCAACAACACGACAGTTGGCCAGGCTGTCACCGTGGAGCTATTCCTGACCTTGCAGCTGGTGCTCTGCATCTTCGCCTCCACCGACGAGCGCCGTGGAGACAGCCTGGGCACCCCCGCCCTCTCCATTGGCTTCTCTGTGACCCTGGGCCACCTCCTTGGGATCCACTACACCGGCTGCTCTATGAATCCTGCCCGCTCCCTGGCTCCAGCCGTTGTCACCGGCATATTTGATGACAACTGG Rattus_norvegicus ATGTGGGAACTCAGATCCATAGCCTTCTCCCGAGCAGTGCTGGCTGAGTTCTTGGCCACGCTCCTTTTTGTCTTCTTTGGCCTTGGCTCAGCCCTCCAGTGGGCCAGCTCCCCACCCTCTGTGCTCCAGATCGCCGTGGCCTTTGGTCTGGGCATCGGCACCCTGGTTCAGGCTCTGGGCCATGTCAGCGGGGCACACATCAACCCCGCCGTGACTGTGGCATGCCTGGTGGGTTGCCATGTCTCCTTCCTTCGAGCTGCCTTCTATGTGGCTGCCCAGCTGCTGGGCGCCGTGGCTGGGGCTGCCATCCTCCATGAGATTACTCCAGTAGAAATCCGTGGGGACCTGGCTGTCAATGCTCTCCACAACAACGCCACAGCTGGCCAGGCTGTGACTGTAGAGCTCTTCCTGACCATGCAGCTGGTGCTGTGCATCTTTGCCTCCACCGACGAGCGCCGCGGTGACAACCTGGGTAGCCCTGCCCTCTCCATTGGTTTCTCTGTTACCCTGGGCCACCTCCTTGGGATCTATTTCACCGGTTGCTCCATGAATCCAGCCCGCTCCCTGGCTCCAGCAGTTGTCACTGGCAAGTTTGATGATCACTGG Balaenoptera_omurai ATGTGGGAACTCCGATCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCATCTTCGTCTTCTTTGGCCTCGGCTCGGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTACTGCAGATTGCCATGGCCTTTGGCCTGGCTATCGGCACCCTGGTGCAGGCTCTGGGTCACGTCAGCGGGGCCCACATCAACCCTGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCACGTCTCCTTTCTCCGAGCTGCCTTCTATGTGGCGGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCTCTGCTCCATGAGATCACACCACCAGACATCCGAGGGGACCTGGCAGTCAATGCTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCCGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCACCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACCGGCAAGTTTGACGACCACTGG Mesoplodon_densirostris ATGTGGGAACTCCGATCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCATCTTTGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCCCAGGCCTTGCCCTCTGTACTGCAGATTGCCATGGCCTTTGGCCTGGCTATTGGCACCCTGGTGCAGGCTCTGGGTCACATCAGCGGGGCCCACATCAACCCTGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCACATCTCCTTTCTCCGAGCTGCCTTCTATGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCTCTGCTCTCTGAGATCACACCACCAGACATCCGAGGGGACCTGGCAGTCAATGTTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCTTGCAGCTGGTGCTGTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCCGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCACCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACTGGCAAGTTTGACAACCACTGG Lipotes_vexillifer ATGTGGGAACTCCGATCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCGTCTTCGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTACTGCAGATTGCCATGGCCTTTGGCCTGGCTATCGGCACCCTGGTGCAGGCTCTGGGTCACGTCAGCGGGGCCCACATCAACCCTGCCGTGACTGTGGCCTGCCTGGTGGGCTGCCACATCTCCTCTCTCCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCCCTGCTCTCTGAGATCACACCACCAGACATCCGAGGAGACCTGGCAGTCAATGCTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCTGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCACCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACTGGCAAGTTTGACAACCACTGG Neophocaena_phocaenoides ATGTGGGAACTCCGGTCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTACTGCAGATTGCCATGGCCTTTGGCCTGGCTATCGGTACCCTGGTGCAGGCTCTGGGTCACGTCAGCGGGGCCCACATCAACCCTGCCGTGACCGTGGCCTGCCTGGTGGGCTGCCACGTCTCCTTTCTCCGAGCTGCCTTCTATGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCCCTGCTCTCTGAGATCACACCACCAGACATCCGGGGGGACCTGGCAGTCAATGCTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCCGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCACCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACTGGCAAGTTTGACAACCACTGG Balaenoptera_acutorostrata ATGTGGGAACTCCGATCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCATCTTCGTCTTCTTTGGCCTCGGCTCGGCTCTCAACTGGCCACAGGCCTTGCCCTCTGTACTGCAGATTGCCATGACCTTTGGCCTGGCTATCGGCACCCTGGTGCAGGCTCTGGGTCACGTCAGCGGGGCCCACATCAACCCTGCCGTGACCGTGGCCTGCCTGGTGGGCTGCCACGTCTCCTTTCTCCGAGCTGCCTTCTATGTGGCGGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCTCTGCTCCACGAGATCACACCACCAGACATCCGAGGGGACCTGGCAGTCAATGCTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCCGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCACCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACTGGCAAGTTTGACAACCACTGG Sousa_chinensis ATGTGGGAACTCCGGTCCATAGCCTTCTCCAGGGCGGTGTTTGCAGAGTTCCTGGCCACACTCGTCTTCGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTACTGCAGATTGCCATGGCCTTTGGCCTGGCTATCGGTACCCTGGTGCAGGCTCTGGGTCACGTTAGCGGGGCCCACATCAACCCTGCCGTGACCGTGGCCTGCCTGGTGGGCTGCCACATCTCCTTTCTCCGAGCTGCCTTCTACGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCCCTGCTCTCTGAGATCACACCACCAGACATCCGGGGGGACCTGGCAGTCAATGCTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCCGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCATCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACTGGCAAGTTTGACAACCACTGG Delphinapterus_leucas ATGTGGGAACTCCGGTCCATAGCCTTCTCCAGGGCAGTGTTTGCAGAGTTCCTGGCCACACTCCTCTTCGTCTTCTTTGGCCTCGGCTCAGCCCTCAACTGGCCACAGGCCTTGCCCTCTGTACTGCAGATTGCCATGGCCTTTGGCCTGGCTATCGGTACCCTGGTGCAGGCTCTGGGTCACGTCAGCGGGGCCCACATCAACCCTGCCGTGACCGTGGCCTGCCTGGTGGGCTGCCATGTCTCCTTTCTCCGAGCTGCCTTCTATGTGGCTGCCCAGCTGCTGGGGGCCGTGGCCGGGGCCGCCCTGCTCTCTGAGATCACACCACCAGACATCCGGGGGGACCTGGCAGTCAATGCTCTCAGCAACAACTCGACAGCTGGCCAGGCCGTTACTGTGGAGCTTTTCCTGACCCTGCAGCTGGTGCTCTGCATCTTCGCCTCCACGGATGAGCGCCGTGGAGACAACCTGGGTACCCCCGCCCTCTCCATTGGTTTCTCTGTGGTCCTGGGCCACCTCCTCGGGATCCATTACACTGGCTGCTCCATGAATCCTGCCCGCTCTCTGGCTCCAGCTGTGGTCACTGGCAAGTTTGACAACCACTGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 606; END; BEGIN TREES; Title 'Trees from "AQP2.tree"'; LINK Taxa = AQP2; TRANSLATE 1 Spermophilus_tridecemlineatus, 2 Sus_scrofa, 3 Tursiops_truncatus, 4 Vicugna_pacos, 5 Bos_taurus, 6 Callithrix_jacchus, 7 Canis_familiaris, 8 Equus_caballus, 9 Felis_catus, 10 Gorilla_gorilla, 11 Homo_sapiens, 12 Loxodonta_africana, 13 Macaca_mulatta, 14 Macropus_eugenii, 15 Mus_musculus, 16 Ochotona_princeps, 17 Oryctolagus_cuniculus, 18 Pongo_pygmaeus, 19 Pteropus_vampyrus, 20 Rattus_norvegicus, 21 Balaenoptera_omurai, 22 Mesoplodon_densirostris, 23 Lipotes_vexillifer, 24 Neophocaena_phocaenoides, 25 Balaenoptera_acutorostrata, 26 Sousa_chinensis, 27 Delphinapterus_leucas; TREE AQP2_tree = (12,14,((19,((8,(4,(2,(5,((22,(23,((3,26),(24,27)))),(21,25)))))),(7,9))),((6,(13,(18,(10,11)))),((1,(15,20)),(16,17)))))[% ] [%unrooted = on ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 606; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 606; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1376878352353; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 359319451587910389; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3632002463008495980; mqVersion 275; checksumv 0 3 366293620 null getNumChars 606 numChars 606 getNumTaxa 27 numTaxa 27 short true bits 15 states 15 sumSquaresStatesOnly 337524.0 sumSquares 337524.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; setActive; endTell; showWindow; endTell; endTell; endTell; end;