#NEXUS [written Mon Jul 08 13:53:39 CEST 2013 by Mesquite version 2.75 (build 564) at IBM-749DC99C59B/192.168.44.112] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Myriostoma_coliforme_EU784376 Myriostoma_coliforme_JN845203 Geastrum_fimbriatum_JN845093 Geastrum_sessile_JN845123 Geastrum_sp._JN845195 Geastrum_fimbriatum_EU784228 Geastrum_argentinum_KC018077 Geastrum_sp._JN845180 Geastrum_sp._JN845182 Geastrum_sp._JN845181 Geastrum_sp._JN845183 Geastrum_fimbriatum_JN845094 Geastrum_fimbriatum_AB509807 Geastrum_fimbriatum_EU784230 Geastrum_cf._fimbriatum_EU784229 ; END; BEGIN CHARACTERS; TITLE Geastrum_argentinum_ITS_alignment; DIMENSIONS NCHAR=542; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = N; MATRIX Myriostoma_coliforme_EU784376 CATTACTG-A--GGTTAAACAGGTCTTGAGACT-C-TGTGTGCTCGACTTGTAATATCT-ATACACACCTATGTGCACTAW-----------TTTTTATA Myriostoma_coliforme_JN845203 CATTACTG-A--GGTTAAACAGGTCTTGAGACT-C-TGTGTGCTCGACTTGTAATATCT-ATACACACCTATGTGCACTAT-----------TTTTTATA Geastrum_fimbriatum_JN845093 CATTACTG-AA-G-ACATA-GAGTTTTGAGACTGCGTGCGTGCTCGACTCTTAATATCC-ACACACACCTCTGTGCACCAT-GGGC--CC-CTTTTTATA Geastrum_sessile_JN845123 CATTACTG-AA-G-ACATA-GAGTTTTGAGACTGCGTGCGTGCTCGACTCTTAATATCC-ACACACACCTCTGTGCACCAT-GGGC--CC-CCTTTTATA Geastrum_sp._JN845195 CATTACTG-AA-G-ACATA-GAGTTTTGAGACTGCGTGCGTGCTCGACTCTTAATATCC-ACACACACCTCTGTGCACCAT-GGGC--CC-CTTTTTATA Geastrum_fimbriatum_EU784228 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCAT-GGGC--CC-CTTTTTATA Geastrum_argentinum_KC018077 CATTACTG-AAAGGACCAA-GGATTT-GAGACTGCGTGTGTGCTCGATCCTTATTATCC-ACATACACCTTTGTGCACCATAAGGC-TCTTCTTTTTATA Geastrum_sp._JN845180 CATTACTG-AAAG-ACAAA-GGATTT-GAGACTGCGTGTGTGCTCGATCCTTACTATCC-ACACACACCTTTGTGCACCATT-GGCATCCTCTTTTTACA Geastrum_sp._JN845182 CATTACTG-AAAG-ACAAA-GGATTT-GAGACTGCGTGTGTGCTCGATCCTTACTATCC-ACACACACCTTTGTGCACCATT-GGCATCCTCTTTTTACA Geastrum_sp._JN845181 CATTACTG-AA-GGACAAA-GGATTT-GAGACTGCGTGTGTGCTCGATCCTTACTATCC-ACACACACCTTTGTGCACCATT-GGCATCCTCTTTTTACA Geastrum_sp._JN845183 CATTACTG-AA-GGACAAA-GGATTT-GAGACTGCGTGTGTGCTCGATCCTTACTATCC-ACACACACCTTTGTGCACCATT-GGCATCCTCTTTTTACA Geastrum_fimbriatum_JN845094 CATTACTG-AA-GATAATA-GGGTCTTGAGACTGCGTGTGTGCTCGTCCCTTACTATCC-ACATACACCTTTGTGCACTAT-GGGCCCCC-CTTTTT-TA Geastrum_fimbriatum_AB509807 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Geastrum_fimbriatum_EU784230 CATTACTG-AA-GAAACAA-GGGTTTTGAGACTGCGTGTGTGCTCGACTCTTACTATCCCATACACACCTTTGTGCACCAAGGGGC-CCC-CTTTTTATA Geastrum_cf._fimbriatum_EU784229 CATTACTGGAAAGACAATA-GGGTTT-GAGACTGCGTGTGTGCTCGACCCTTACTATCC---ACAC-CCTCTGTGCACCATGTTGC--CC-CTTTTTATA Myriostoma_coliforme_EU784376 AAAACCT-GTTAT---ATGCATGTGT-ATTT-AA---CTCTACGGAGTAAA---A-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Myriostoma_coliforme_JN845203 AAAACCT-GTTAT---ATGCATGTGT-ATTT-AA---CTCTACGGAGTAAA---A-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Geastrum_fimbriatum_JN845093 AACAC-GAGTTATTACATGCATGT-T-ATTTTAATG-CTCTACGGAGTAAATGTA-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Geastrum_sessile_JN845123 AACAC-GAGTTATTATATGCATGT-T-ATTTTAATG-CTCTACGGAGTAAATGTA-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Geastrum_sp._JN845195 AACAC-GAGTTATTATATGCATGT-T-ATTTTAATG-CTCTACGGAGTAAATGTA-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Geastrum_fimbriatum_EU784228 AACAC-GAGTTATTAYATGCATGT-T-ATTTTRATG-CTCTACGGAGTAAATGTA-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Geastrum_argentinum_KC018077 AACAC---GTAGTTATATGCATGTATAATAGTTATAACTCTAAGGAGTTTATCTA-TAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAAAA Geastrum_sp._JN845180 AACAC--AGTT-TT-TATGCATGTATGATAGTGATA-CTCTATGGAGTAAATCTA-TAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAAAA Geastrum_sp._JN845182 AACAC--AGTT-TT-TATGCATGTATGATAGTGATA-CTCTATGGAGTAAATCTA-TAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAAAA Geastrum_sp._JN845181 AACAC--AGTT-TT-TATGCATGTATGATAGTGATA-CTCTATGGAGTAAATCTA-TAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAAAA Geastrum_sp._JN845183 AACAC--AGTT-TT-TATGCATGTATGATAGTGATA-CTCTATGGAGTAAATCTA-TAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAAAA Geastrum_fimbriatum_JN845094 AACACCGAGTT-T-ATATGCATGTCTTAT--TATTG-CTCTACGGAGTAAATGTAACAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Geastrum_fimbriatum_AB509807 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Geastrum_fimbriatum_EU784230 AATACCGAGTT---ATATGCATGTATAGTTTGTATA-CTCTACGGAGTTAA-ATA-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGAAGAA Geastrum_cf._fimbriatum_EU784229 AACACCGAGT----ATATGCATGTATAGT----ACA-CTCTACGGAGTTAATGTA-CAACTTTCAACAACGGATCTCTTGGCTTTCGCATCGATGACGAA Myriostoma_coliforme_EU784376 CGCAGCGAAT-TGCGAAAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Myriostoma_coliforme_JN845203 CGCAGCGAAT-TGCGAAAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_fimbriatum_JN845093 CGCAGCGAACGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_sessile_JN845123 CGCAGCGAACGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_sp._JN845195 CGCAGCGAACGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_fimbriatum_EU784228 CGCAGCGAACGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_argentinum_KC018077 CGCAGCGAATGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_sp._JN845180 CGCAGCGAATGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_sp._JN845182 CGCAGCGAATGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_sp._JN845181 CGCAGCGAATGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_sp._JN845183 CGCAGCGAATGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_fimbriatum_JN845094 CGCAGCGAACGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_fimbriatum_AB509807 NNNNNNGAACGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_fimbriatum_EU784230 CGCAGCGAACGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Geastrum_cf._fimbriatum_EU784229 CGCAGCGAATGTGCGAAACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCT Myriostoma_coliforme_EU784376 GTTTGAGAGTCGTGAACTAC-CTCAATTTGTTACTTTTGTAA----T-GAAA-TTGGACTTGGGTGTT-GCTGT-G--CTCACCTTAAATGGATTAGTGA Myriostoma_coliforme_JN845203 GTTTGAGAGTCGTGAAATAC-CTCAATTTGTTACTTTTGTAA----T-GGAA-TTGGACTTGGGTGTT-GCTGT-G--CTCACCTTAAATGCATTAGTGA Geastrum_fimbriatum_JN845093 GTTTGAGTGTCGTGAA-TACTCTCAACTTCAACCCTTTTTAAGGG-AGGAAGGTTGGACTTGGGTGTTTGTCGAAGGACTCATCCTAAATGCATTAGCGA Geastrum_sessile_JN845123 GTTTGAGTGTCGTGAA-TACTCTCAACTTCAACCCTTTTTAAGGG-AGGAAGGTTGGACTTGGGTGTTTGTCGAAGGACTCATCCTAAATGCATTAGCGA Geastrum_sp._JN845195 GTTTGAGTGTCGTGAA-TACTCTCAACTTCAACCCTTTTTAAGGG-AGGAAGGTTGGACTTGGGTGTTTGTTGAAGGACTCATCCTAAATGCATTAGCGA Geastrum_fimbriatum_EU784228 GTTTGAGTGTCGTGAA-TACTCTCAACTTCAACCCTTTTTAAGGG-AGGAAGGTTGGACTTGGGTGTTTGTCGAAGGACTCATCCTAAATGCATTAGCGA Geastrum_argentinum_KC018077 GTTTGAGTGTCGCATCATACTC--AGTTTCAAACCTTTGTAAGGTCTTGGAA-CTGGATTTGGATGTT-GTTGTTGGACTCGTCCTAAATGCATTAGTGA Geastrum_sp._JN845180 GTTTGAGTGTCGTGAAATACTC--AATTTCAAACTTTTGTAAGGT-TTGAAA-TTGGATTTGGGTGTT-GTTGTGGGACTCACCCTAAATGCATTAGTGA Geastrum_sp._JN845182 GTTTGAGTGTCGTGAAATACTC--AATTTCAAACTTTTGTAAGGT-TTGAAA-TTGGATTTGGGTGTT-GTTGTGGGACTCACCCTAAATGCATTAGTGA Geastrum_sp._JN845181 GTTTGAGTGTCGTGAAATACTC--AATTTCAAACTTTTGTAAGGT-TTGAAA-TTGGATTTGGGTGTT-GTTGTGGGACTCACCCTAAATGCATTAGTGA Geastrum_sp._JN845183 GTTTGAGTGTCGTGAAATACTC--AATTTCAAACTTTTGTAAGGT-TTGAAA-TTGGATTTGGGTGTT-GTTGTGGGACTCACCCTAAATGCATTAGTGA Geastrum_fimbriatum_JN845094 GTTTGAGTGTCGTGAAATACTCTCAATTTCAATCTTTT-T------TTGAAA-TTGGACTTGGGTGTT-GCTG-TGAGCTCATCCTAAATGCATTAGCGA Geastrum_fimbriatum_AB509807 GTTTGAGTGTCGTGAACTACTCTCGATTTCAAACTTTT----GGT-TTGAAA-TTGGATTTGGGTGTT-GTCG-TGGACTCATCCTAAATGCATTAGCGA Geastrum_fimbriatum_EU784230 GTTTGAGTGTCGTGAATAACTCTCAATTTCAAATATTT-TAATATCT-GACA-TTGGACTTGGGCGTT-GTCG-TGGACTCGTCCTAAATGCATTAGCGA Geastrum_cf._fimbriatum_EU784229 GTTTGAGTGTCGCGAAATACTCTCGATTTCATTTTAATCT--------GAAA-TCGGATTTGGGTGTT-GTTG-TGGACTCATCCTAAATGCATTAGCGG Myriostoma_coliforme_EU784376 TGGGTTC-T-GATCAACAT-CAATAC-ATCA-TAAGA--T---G-ATTGTGTTGAAGT--GA---TC-AGACTGTTGCTTT-AAAC----------ATGA Myriostoma_coliforme_JN845203 TGGGTTC-T-GATCAACAT-CAATAC-ATCA-TAAGA--T---G-ATTGTGTTGAAGT--GA---TC-AGACTGTTGCTTTTAAAC----------ATGA Geastrum_fimbriatum_JN845093 TCTG-CC-TCGATCA-CACACAATGTGATAATTAAAA-CTAAAGCATTGTTTAATGATC-AA--GTCGAGACTGCTTCTAACCGTC-ACAA-GACAATGT Geastrum_sessile_JN845123 TCTG-CC-TCGATCA-CACACAATGTGATAATTAAAA-CTAAAGCATTGTTTAATGATC-AA--GTCGAGACTGCTTCTAACCGTC-ACAA-GACAATGT Geastrum_sp._JN845195 TCTG-CC-TCGATCA-CACACAATGTGATAATTAAAA-CTAAAGCATTGTTTAATGATC-AA--GTCGAGACTGCTTCTAACTGTC-GCAA-GACAATGT Geastrum_fimbriatum_EU784228 TCTG-CC-TCGATCA-CACACAATGTGATAATTAAAA-CTAAAGCATTGTTTAATGATCCAA--GTCGAGACTGCTNNNNNNNNNNNNNNNNNNNNNNNN Geastrum_argentinum_KC018077 TCTGGCTATTGATCA-TGAGCAATGTAATAATTTA---TT-AA-CGTTGTC-AA-GATC-AACGGTAAAGATGGCTTCTAACTGTC-GAAA-GACAATGC Geastrum_sp._JN845180 TCTG-CCATTGATCA-TGGGCAATGTGATAAG-AAAA----AAGCATTGTTAAA-GATC-GGGGGTAATGATTGCTTCTAACTGTC-GAAA-GACAATGC Geastrum_sp._JN845182 TCTG-CCATTGATCA-TGGGCAATGTGATAAG-AAAA----AAGCATTGTTAAA-GATC-GGGGGTAATGATTGCTTCTAACTGTC-GAAA-GACAATGC Geastrum_sp._JN845181 TCTG-CCATTGATCA-TGGGCAATGTGATAAG-AAAA----AAGCATTGTTAAA-GATC-AGGGGTAATGATTGCTTCTAACTGTC-GAAA-GACAATGC Geastrum_sp._JN845183 TCTG-CCATTGATCA-TGGGCAATGTGATAAG-AAAA----AAGCATTGTTAAA-GATC-AGGGGTAATGATTGCTTCTAACTGTC-GAAA-GACAATGC Geastrum_fimbriatum_JN845094 TCTGCCT-TTGATCAACACACAATGTGATAAATAAAA------GCGTTGTT-AA-GATC-AA--GTCAGGACCGCTTCTAATCGTCCGAAAGGACAATGT Geastrum_fimbriatum_AB509807 TCTGCCC-TTGATCA-CATGTGATGTGATAAG-AAAA-----AGCATTACT-A--GATC-AAGTGGTTAGGTTGCTTCTAATCGTC-GAAA-GACAATGT Geastrum_fimbriatum_EU784230 TCTGCCC-T-GATCA-CACACAATGTGATAAGTAAAAAATAAAGCATTGTT-ATGGTTGGGTTTG-AAAGATGGCTTCTAATCGTC-GTAATGACAATGT Geastrum_cf._fimbriatum_EU784229 TCTG-CC-TTGATCA-CGCGCAATGTGATAA-TAAAA-----AGCATTGTT-A-GGATC-AAGA--CAAGGTTGCTCCCAACCGTC-GAAA-GACAATGT Myriostoma_coliforme_EU784376 CATTTGACCTCAAATCAGGCAGGACTACCC-GCTGAACTTAA Myriostoma_coliforme_JN845203 CATTTGACCTCAAATCAGGCAGGACTACCCCGCTGAACTTAA Geastrum_fimbriatum_JN845093 CATTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_sessile_JN845123 CATTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_sp._JN845195 CATTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_fimbriatum_EU784228 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Geastrum_argentinum_KC018077 GGTTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAN Geastrum_sp._JN845180 GGTTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_sp._JN845182 GGTTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_sp._JN845181 GGTTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_sp._JN845183 GGTTTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_fimbriatum_JN845094 CAT-TGACCTCAGATCAGGCAGGACTACCC-GCTGAACTTAA Geastrum_fimbriatum_AB509807 CATCTGACCTCAAATCAGGTAGGACTACCC-GCTGAACTTAA Geastrum_fimbriatum_EU784230 CGT-TGACCTCAA-TCNNNNNNNNNNNNNNNNNNNNNNNNNN Geastrum_cf._fimbriatum_EU784229 CGTTTGACCTCAAATCAGGTAGGATTACCC-GCTGAACTTAA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 542; END; BEGIN TREES; Title Geastrum_argentinum_ITS_bayesian_tree; LINK Taxa = Taxa; TRANSLATE 1 Myriostoma_coliforme_EU784376, 2 Myriostoma_coliforme_JN845203, 3 Geastrum_fimbriatum_JN845093, 4 Geastrum_sessile_JN845123, 5 Geastrum_sp._JN845195, 6 Geastrum_fimbriatum_EU784228, 7 Geastrum_argentinum_KC018077, 8 Geastrum_sp._JN845180, 9 Geastrum_sp._JN845182, 10 Geastrum_sp._JN845181, 11 Geastrum_sp._JN845183, 12 Geastrum_fimbriatum_JN845094, 13 Geastrum_fimbriatum_AB509807, 14 Geastrum_fimbriatum_EU784230, 15 Geastrum_cf._fimbriatum_EU784229; TREE con_50_majrule = (1:0.007603626175695951,2:0.003457844752512085,((((3:0.00310683589126703,4:0.003561357956321941,6:0.001973347207644789):0.005091107851332868,5:0.00402352702440059):0.05326346184333475,((7:0.08047815066839888,((8:0.001494254715319697,9:0.001506590656494279):0.003476248027846231,10:0.00151423203969846,11:0.001415305239648103):0.0156371639577619):0.07184799170031643,13:0.05221975602235878,14:0.08551604832872413,15:0.06150148527806608):0.01578950355662793):0.01893291578844319,12:0.03834205268297457):0.1746865896046286); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 542; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 542; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1373284419727; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2223598781455576774; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8380443868485258066; mqVersion 275; checksumv 0 3 1338211847 null getNumChars 542 numChars 542 getNumTaxa 15 numTaxa 15 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 173681.0 sumSquares 154131.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 924 586; setLocation 58 58; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2223598781455576774 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2223598781455576774; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 824 519; setLocation 58 58; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2223598781455576774 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 832.1373283862096.7573188534081219912; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 824 519; setLocation 58 58; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8380443868485258066 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 824 519; setLocation 58 58; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;