#NEXUS

[File saved Tue Jul 09 15:43:59 2013]

BEGIN TAXA;
	DIMENSIONS NTAX = 21;
	TAXLABELS
		Cyclomyces_fuscus_Cui7393
		Cyclomyces_lamellatus_Cui7629
		Cyclomyces_xeranticus_Cui9209
		Fomitopsis_pinicola_AFTOL_ID770
		Hydnochaete_duportii_AFTOL_ID666
		Hydnochaete_japonica_He245
		Hydnochaete_paucisetigera_Cui7845
		Hydnochaete_peroxydata_JMB1819
		Hydnochaete_peroxydata_JMB2056
		Hydnochaete_peroxydata_JMB2102
		Hydnochaete_tabacinoides_Cui10428
		Hymenochaete_acanthophysata_CBS925_96
		Hymenochaete_corrugata_He761
		Hymenochaete_cruenta_He766
		Hymenochaete_floridea_He536
		Hymenochaete_murina_He569
		Hymenochaete_rheicolor_He503
		Hymenochaete_rubiginosa_He1049
		Hymenochaete_sphaericola_He303
		Pseudochaete_tabacina_He810
		Trametes_villosa_FP71974R
		;
ENDBLOCK;


BEGIN TREES;
[!

>Data file = C:\Users\JM Baltazar\Documents\Doutorado\molecular\hydnochaete\combined\assemblado\parcimonia\hyd2genes_nexus.txt

>Heuristic search settings:

>  Optimality criterion = parsimony

>    Character-status summary:

>      Of 1670 total characters:

>        All characters are of type 'unord'

>        All characters have equal weight

>        1067 characters are constant

>        161 variable characters are parsimony-uninformative

>        Number of parsimony-informative characters = 442

>    Gaps are treated as "missing"

>    Multistate taxa interpreted as uncertainty

>  Starting tree(s) obtained via stepwise addition

>  Addition sequence: random

>    Number of replicates = 1000

>    Starting seed = 1135094904

>  Number of trees held at each step during stepwise addition = 1

>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)

>  Steepest descent option not in effect

>  Initial 'MaxTrees' setting = 1000 (will be auto-increased by 1000)

>  Branches collapsed (creating polytomies) if maximum branch length is zero

>  'MulTrees' option in effect

>  Topological constraints not enforced

>  Trees are unrooted

>

>Heuristic search completed

>   Total number of rearrangements tried = 1300849

>   Score of best tree(s) found = 1229

>   Number of trees retained = 3

>   Time used = 2.15 sec

]
	TRANSLATE
		1	Cyclomyces_fuscus_Cui7393,
		2	Cyclomyces_lamellatus_Cui7629,
		3	Cyclomyces_xeranticus_Cui9209,
		4	Fomitopsis_pinicola_AFTOL_ID770,
		5	Hydnochaete_duportii_AFTOL_ID666,
		6	Hydnochaete_japonica_He245,
		7	Hydnochaete_paucisetigera_Cui7845,
		8	Hydnochaete_peroxydata_JMB1819,
		9	Hydnochaete_peroxydata_JMB2056,
		10	Hydnochaete_peroxydata_JMB2102,
		11	Hydnochaete_tabacinoides_Cui10428,
		12	Hymenochaete_acanthophysata_CBS925_96,
		13	Hymenochaete_corrugata_He761,
		14	Hymenochaete_cruenta_He766,
		15	Hymenochaete_floridea_He536,
		16	Hymenochaete_murina_He569,
		17	Hymenochaete_rheicolor_He503,
		18	Hymenochaete_rubiginosa_He1049,
		19	Hymenochaete_sphaericola_He303,
		20	Pseudochaete_tabacina_He810,
		21	Trametes_villosa_FP71974R
		;
	TREE * PAUP_1= (4,(21,((((17,(1,3)),(7,18)),((((5,6),(10,(8,9))),(12,16)),(14,(15,19)))),((2,11),(13,20)))));
	TREE PAUP_2= (4,(21,((((17,(1,3)),(7,18)),((((5,6),(9,(8,10))),(12,16)),(14,(15,19)))),((2,11),(13,20)))));
	TREE PAUP_3= (4,(21,((((17,(1,3)),(7,18)),((((5,6),(8,(9,10))),(12,16)),(14,(15,19)))),((2,11),(13,20)))));
ENDBLOCK;