#NEXUS [written Wed Jul 24 16:28:41 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Coniochaeta_ostrea_DQ470959_ Coniochaeta_rhopalochaeta_GQ351561_ Prosthecium_innesii_EU683071_ Prosthecium_opalus_EU039997_ Prosthecium_acerinum_EU039996_ Spadicoides_bina_EF204507_ F170 Spadicoides_verrucosa_EF204508_ Spadicoides_atra_EF204506_ Lentomitella_crinigera_AY761086_ Ceratostomella_cuspidata_FJ617558_ Calosphaeria_barbirostris_EF577059 Dactylaria_parvispora_EU107296_ Myrmecridium_schulzeri_EU041835_ Myrmecridium_flexuosum_EU041825_ F195_Dryopteridaceae F540 Lentomitella_cirrhosa_AY761085_ Ceratostomella_pyrenaica_DQ076323_ Tectonidula_hippocrepida_FJ617557_ ; END; BEGIN CHARACTERS; TITLE IncertaesedisMB; DIMENSIONS NCHAR=542; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Coniochaeta_ostrea_DQ470959_ -------------------------------------------CCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC--TT-C----G-GCTCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATAGTCGGACACCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATCTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGTGCCGGGCTGATCATCCAGTGTTCTC-ACTGGTGCACTCGACCCG-GCT-CAGGCCAGCGTCGGTTCTCGCAGGGGGACAAAAGCTCCGGGAACGTGGCT--CCTCC-GGGAGTGTTATAGCCCGCTGCTCAATACC Coniochaeta_rhopalochaeta_GQ351561_ ----------------------------------------------------CGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC--TT-C----G-GCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCCTACGGTCGGACACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATCTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTTGTGACCAGACTTGTGCCGGGCTGATCATCCACGGTTCTC-CGTGGTGCACTCTGCCCGTGCC-CAGGCCAGCGTCGGTTCTGGGACGGGGACAAAAGCTTGGGGAACGTGGCT--CCTCC-GGGAGTGTTATAGCCCCTTGCCCAATACC Prosthecium_innesii_EU683071_ --------------------GAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CT--C----G-GCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATGGTCGGACGCCAAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATCTCTTCTAAAGCTAAATATTGGGCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACCTTGAAAAGGGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGGGCTCGTGACCAGACTCGTGCCAGGCGGCTCATCCGGCGTTCTC-GCCGGTGCACTCCGCCTG-GCC-CGGGCCAGCATCGGTTCTTGCCGGGGGATAAGAGCATCGGGAACGTGGCCCCTCTC-GGGGGGTGTTATAGCCCGTTGCACGATGCC Prosthecium_opalus_EU039997_ --------------------GAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CT--C----G-GCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATGGTTGGACACCAAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATCTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACCTTGAAAAGGGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGCGCCTGGCGGCTCATCCGGGGTTCTC-TCCGGTGCACTCCGCCAG-GCT-CAGGCCAGCATCGGTTCTGGCGGGGGGATAAGATCGGCGGGAACGTAGCA-CCCTCCGGGGTGTGTTATAGCCCGCCGAACGATACC Prosthecium_acerinum_EU039996_ --------------------GAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CT--C----G-GCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATGGTTGGACACCAAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATCTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACCTTGAAAAGGGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGCGCCTGGCGGCTCATCCGGGGTTCTC-TCCGGTGCACTCCGCCAG-GCT-CAGGCCAGCATCGGTTCTGGCGGGGGGATAAGATCGGCGGGAACGTAGCA-CCCTCCGGGGTGTGTTATAGCCCGCCGAACGATACC Spadicoides_bina_EF204507_ ----------------GGAGGAA--GAA-CC-ACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC--TT-C----G-GCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTATAGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTAAAAGGGAAGCGCTTATGACCAGACTTGTTCCAGGTTGATCATCCAGTGTTCTC-ACTGGTGCACTCTGCCTG-GAT-CAGGCCAGCGTCGATTTTCGTAGGGGGATAAAGACATTGGGAATGTAGCT--CCTCC-GGGAGTGTTATAGCCCTTTGTATAATACC F170 AAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGTTCAAATTTGAAATCTGGCCC---CC--AG-GCCCGAGTTGTAATTTGTAGAGGATGCTTCTGGCGCGGCGCCATCTGAGTTCCCTGGAACGGGACGCCGAAGAGGGTGAGAGCCCCGTAGAGATGGACGCCTAGCCTCTGTGTAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTTGCGCCCGGCGGATCATCCGGCGTTCTC-GCCGGTGCACTCCGCCGG-GCT-CAGGCCAGCATCGGTTCTCCCAGTGGGATAAAGGCGCCGGGAACGTAGCT--CCTCC-GGGAGTGTTATAGCCCGGCGCGCAATGC- Spadicoides_verrucosa_EF204508_ -------------------------GAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC---CC--AG-GCCCGAGTTGTAATTTGTAGAGGATGCTTCTGGCGCGGCGCCTTCTGAGTTCCCTGGAACGGGACGCCAAAGAGGGTGAGAGCCCCGTACGGTTGGACGCCTAGCCTTTGTGTAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTTGCGCCCGGCGGATCATCCGGCGTTCTC-GCCGGTGCACTCCGCCGG-GCT-CAGGCCAGCATCGGTTCCTGCCGGGGGATAAAGGTGCCGGGAACGTAGCTCCCCTC-GGGGAGTGTTATAGCCCGGCGCGTCATGCC Spadicoides_atra_EF204506_ -----------------------------------------------------------------------------AATTTGAAATCTGGC-CT--CG--TG--CCCGAGTTGTAATTTGTAGAGGATGCTTC-GGCGCGGCGCCTCCCGAGTGCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATGGTTGGACGCCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAACGGGAGGTAAATTCCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGGCCAGACTTGGGCCCCGGGGATCAGCTGGCGTTCTC-GCCAGCGCACTCCGCGGG-GCC-CAGGCCAGCATCGGTTCCCCTAGGGGGATAAAAGCTCCGGGAACGTAGCT--CCTCC-GGGAGTGTTATAGCCCGCTGCAGAATACC Lentomitella_crinigera_AY761086_ AAGCATATCAATAAGCGGAGGAAAAGAACCCAACAGGGATTGCC-TCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CAA--GC--G-GCCCGAGTTGTAATTTGTAGAGGATGCTTTAGGCGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATGGTCGGACGCCAAGCCATTGTAAAGCTCCCTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGAAAAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACCTGCGCCCTGGGGATCATCCGGCGTTCTC-GCCGGTGCACTCCGCTGG-GCTGCAGGCCAGCATCGGTTCTCCTAGGGGGATAAAAGCATTGGGAACGTAACT-CCTTA--GGGAGTGTTATAGCCCGTTGTACAATACC Ceratostomella_cuspidata_FJ617558_ AAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CTT-CC--AG--CCCGAGTTGTAATTTGCAGAGGATGCTTTGGGCGCGGCGCTTTCTGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATAGTTGGACGCCTAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTTGGGCTCGGCGGATCATCCAGCGTTCTC-GCTGGTGCACTCCGCCAG-GTT-CAGGCCAGCATCGGTTTTCTCAGGGGGATAAAAGCTTCGGGAACGTAGCT--CCTCC-GGGAGTGTTATAGCTCGTTGCACAATACC Calosphaeria_barbirostris_EF577059 AAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CT--C----G-GCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGCGCCTTCTGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTATAGTTGGACGCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCCCTGCAAATCATCCGGCGTTCTC-GCCGGTGCACTTTGCTGG-GTC-CAGGCCAGCATCGGTTTCCCCGGGGGGATAAAAGCTCTGGGAACGTAACT--CCTCC-GGGAGTGTTATAGCCCTCTGCACAATACC Dactylaria_parvispora_EU107296_ -AGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCC-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC---CC--AG-GGTCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATAGTCGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGCGCCCGGTTGATCATCCAGCGTTCTC-GCTGGTGCACTCTGCCGG-GCT-CAGGCCAGCATCGGTTCTTGCGGGGGGATAAAAGTTGTGGGAATGTAGCT-CCCTC--GGGAGTGTTATAGCCCGCTGCAGAATACC Myrmecridium_schulzeri_EU041835_ AAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCC-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCGC------AAG--CCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACAGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATGCCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGCTCGTGACCAGACTTGCGCCCGTCGGATCATCCGGCCTTCTG-GCCGGTGCACTCCGGCGG-GCT-CAGGCCAGCATCGGTTCTTCCGGGGGGACAAAAGCGGCGGGAACGTAGCT--CCTCC-GGGAGTGTTATAGCCCGCCGCAGAATACC Myrmecridium_flexuosum_EU041825_ AAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCC-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCGC------AAG--CCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACAGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATGCCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTCGTGACCAGACTTGCGCCCGGCGGATCATCCGGCCTTCTG-GCCGGTGCACTCCGCCGG-GCT-CAGGCCAGCATCGGTTCTTCCGGGGGGACAAAAGCGGTGGGAACGTAGCT--CTTCC-GGGAGTGTTATAGCCCGCCGCAGCATACC F195_Dryopteridaceae AAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CT--CC--AG-GCCCGAGTTGTAATTTGGAGAGGATGCTTCTGGTGCGGCGCTATCTGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTAGAGATAGAAGCCTAGCCTCTGTGTAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGCGCCCAGCGGATCATCCAGCGTTCTCCGCTGGTGCACTCCGCTGG-GCT-CAGGCCAGCATCGGTTCCTCTAGTGGGATAAAGGCGCTGGGAACGTGGCTCCCCTC-GGGGAGTGTTATAGCCCAGCGTGCAATGCC F540 AAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCCCCGCGGG-GCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTACGGTCGGACGCCAAGCCTTTGTAAAGCTCCCTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAACGGGAGGTAAATTCCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTTGCGCCCGGCGGATCATCCGGCGTTCTC-GCCGGTGCACTCCGCCGG-GCT-CAGGCCAGCATCGGCTCCGGCAGGGGGACAAAGGCCCGGGGAACGTAGCT-CCCTCAGCGGAGTGTTATAGCCCCGGGCACAATGCC Lentomitella_cirrhosa_AY761085_ -----------------------------CCAACAGGGATTGCC-TCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-------GTGCCCGAGTTGTAATTTGTAGAGGATGCTTTCGGCGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTATGGTTGGATGCCAAGCCATTGTATAGCTCCTTCGACGAGTCAAGTAGTTTGGGAATGCTGCTTAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGAAAAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACCTGCGCCCTGGGGAT-ATCCGGCGTTCTC-GCCGGTGCTTTCCGCTGG-GTTGCAGGCCAGCATCGGTTTTCCTAGGGGGACAAAAGCTTCGGGAACGTGGCT-CCTTC--GGGAGTGTTATAGCCCGTCGTACAATACC Ceratostomella_pyrenaica_DQ076323_ ----------------------------AC-AACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCT--C----GGGCCCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGCGGCGCCTTCTGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTATAGTTGGACGCCTAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTTGGGCCCGGCGGATCATCTAGCGTTCTC-GCTGGTGCACTCCGCCGG-GTT-CAGGCCAGCATCGGTTTCCTCAGGGGGATAAAAGCGTCGGGAATGTAGCT-CCCCC--GGGAGTGTTATAGCCCGTCGCAGAATACC Tectonidula_hippocrepida_FJ617557_ -----------------------------CCAACAGGGATTGCCCT-AGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGC-CT--C----G-GCCCGAGTTGTAATTTGTAGAGGATGCTTTCGGCGCGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTATAGTTGGACACCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCCCCGCGGATCATCCGGCGTTCTC-GCCGGTGCACTCCGTAGG-GCC-CAGGCCAGCATCGGTTTTTCCGGGGGGACAAAAGCTTCGGGAACGTATCT--CCTCC-GGGAGTGTTATAGCCCGCTGCACAATACC ; END; BEGIN TREES; Title IncertaesedisMB; LINK Taxa = Taxa; TRANSLATE 1 Coniochaeta_ostrea_DQ470959_, 2 Coniochaeta_rhopalochaeta_GQ351561_, 3 Prosthecium_innesii_EU683071_, 4 Prosthecium_opalus_EU039997_, 5 Prosthecium_acerinum_EU039996_, 6 Spadicoides_bina_EF204507_, 7 F170, 8 Spadicoides_verrucosa_EF204508_, 9 Spadicoides_atra_EF204506_, 10 Lentomitella_crinigera_AY761086_, 11 Ceratostomella_cuspidata_FJ617558_, 12 Calosphaeria_barbirostris_EF577059, 13 Dactylaria_parvispora_EU107296_, 14 Myrmecridium_schulzeri_EU041835_, 15 Myrmecridium_flexuosum_EU041825_, 16 F195_Dryopteridaceae, 17 F540, 18 Lentomitella_cirrhosa_AY761085_, 19 Ceratostomella_pyrenaica_DQ076323_, 20 Tectonidula_hippocrepida_FJ617557_; TREE con_50_majrule = (1:0.02392,2:0.081163,((((3:0.067748,(4:0.002484,5:0.002456)1.00:0.042874)1.00:0.046952,((7:0.009408,16:0.051206)1.00:0.020619,8:0.023513)1.00:0.034853,(9:0.06541,(10:0.029751,18:0.034901)1.00:0.033652)0.86:0.017346,((11:0.019916,19:0.02394)1.00:0.025986,(12:0.029989,20:0.030482)0.94:0.018406)0.77:0.01361,17:0.07294)0.76:0.017431,(13:0.027946,(14:0.014186,15:0.009771)1.00:0.055456)0.88:0.02732)0.99:0.027514,6:0.061843)0.99:0.025553); TREE con_50_majrule = (1:0.02392,2:0.081163,((((3:0.067748,(4:0.002484,5:0.002456):0.042874):0.046952,((7:0.009408,16:0.051206):0.020619,8:0.023513):0.034853,(9:0.06541,(10:0.029751,18:0.034901):0.033652):0.017346,((11:0.019916,19:0.02394):0.025986,(12:0.029989,20:0.030482):0.018406):0.01361,17:0.07294):0.017431,(13:0.027946,(14:0.014186,15:0.009771):0.055456):0.02732):0.027514,6:0.061843):0.025553); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 542; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 542; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 542; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374683321503; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5161017726982601662; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1061751801449287924; mqVersion 275; checksumv 0 3 3781616872 null getNumChars 542 numChars 542 getNumTaxa 20 numTaxa 20 short true bits 15 states 15 sumSquaresStatesOnly 196147.0 sumSquares 196147.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 107; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1086 654; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5161017726982601662 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5161017726982601662; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 979 587; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5161017726982601662 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 822.1329426496535.1018291397485114608; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 979 587; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setTree '(1:0.01196,(2:0.081163,(6:0.061843,((13:0.027946,(14:0.014186,15:0.009771):0.055456):0.02732,(17:0.07294,(3:0.067748,(4:0.002484,5:0.002456):0.042874):0.046952,(8:0.023513,(7:0.009408,16:0.051206):0.020619):0.034853,(9:0.06541,(10:0.029751,18:0.034901):0.033652):0.017346,((11:0.019916,19:0.02394):0.025986,(12:0.029989,20:0.030482):0.018406):0.01361):0.017431):0.027514):0.025553):0.01196);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;