#NEXUS [written Wed Jul 24 16:29:22 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Monographella_nivalis_Var_nivalis_FJ614651_ Leiosphaerella_sp__HKUCC_6135_AF452037 Leiosphaerella_sp__HKUCC_7685_AF452036_ Lanceispora_sp__HKUCC_7284_AF452035_ Lanceispora_sp__BCP_3536_AF452034_ F136 Lanceispora_sp__BCP_3574_AF452032_ Amphisphaeria_umbrina_FJ176863_ Truncatella_restionacearum_DQ278929_ Dyrithiopsis_lakefuxianensis_AF452047_ Bartalinia_lateripes_AF382368_ Bartalinia_robillardoides_AF382366_ Bartalinia_bischofiae_AF382367_ Bartalinia_laurina_AF382369_ Seimatosporium_parasiticum_AB593741_ Seimatosporium_mariae_AB593740_ Seimatosporium_kriegerianum_AB593738_ Monochaetia_monochaeta_AF382370_ Monochaetia_kansensis_DQ534037_ Seiridium_eucalypti_DQ414533_ Seiridium_unicorne_DQ414532_ Seiridium_papillatum_DQ414531_ Linocarpon_appendiculatum_AY346291_ Linocarpon_elaeidis_DQ810222_ ; END; BEGIN CHARACTERS; TITLE LanceisporaMB; DIMENSIONS NCHAR=544; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Monographella_nivalis_Var_nivalis_FJ614651_ GAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTT-------CTGGTCCGAGTTGTAATTTGTAGAGGATGATTTTGGTTAGGT-ACCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGATGCCGAGCCTTTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACCTTTGCCTTGCGGATCATCCGGTGTTCTCACCGGTGCACTTCGCTTGGTTGAGGCCA-GCA-TCAGTTTTGGCGGCGGGATAAAGACTTCAGGAACGTGACT---CCCCC--GGGA-GTGTT-ATAGCCTGCTGTGTAATACCGCCGCTGGGACTGAGGACCGCGC Leiosphaerella_sp__HKUCC_6135_AF452037 GAAACCAACAGGGATTCCCCTAGTAACGGCGGGTGAAGCGGAAACAGCTCAAATTTGAAAGCTGGCCTT-------CGGGCCCGCGTTGTAATTTGTAGAGGATGCTTTTGGTTAGGT-GCCTTCCAAGTGCCCTGGAACGGGTCGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGACACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGTTTACGACCAGACCTTTTCCAGGCGGATCATCCGGTGTTCTCACCGGTGCACTTCGCCTGGTTTAGGCCA-GCA-TCGGTTTTCGCTGGGGGATAAAAGCTTCGGGAACGTGGCT---CCCTC--GGGA-GTGTT-ATAGCCCGTTGCATAATACCCTAGC-GGGACCGAGGACCGCGC Leiosphaerella_sp__HKUCC_7685_AF452036_ GAAACCAACAGGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAACAGCTCAAATTTGAAAGCTGGCCTT-------CGGGCCCGCGTTGTAATTTGTAGAGGATGCTTTTGGTTAGGT-GCCTTCCAAGTGCCCTGGAACGGGTCGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGACACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGTTTACGACCAGACCTTTTCCAGGCGGATCATCCGGTGTTCTCACCGGTGCACTTCGCCTGGTTTAGGCCA-GCA-TCGGTTTTCGCTGGGGGATAAAAGCTTCGGGAACGTGGCT---CCCTC--GGGA-GTGTT-ATAGCCCGTTGCATAATACCCTAGC-GGGACCGAGGACCGCGC Lanceispora_sp__HKUCC_7284_AF452035_ GAAACCAACAGGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAACAGCTCAAATTTGAAAGCTGACTTT-------CGGGTCCGCATTGTAATTTGTAGAGGATGCTTTTGGTCAGGT-TCCTTCCAAGTGCCCTGGAACGGGTCGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGAAACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGTTTACGACCAGACCTTTTCTAGGCGGATCATCCGGTGTTCTCACCGGTGCACTTCGTCTAGTTTAGGCCA-GCA-TCGGTTTTCGCTGGGGGATAAAAGCTTCAGGAACGTGGCT----CCTCC-GGGA-GTGTTAATAGCCTGTTGTATAATACCCTAGCGGGGACCGAGGACCGCGC Lanceispora_sp__BCP_3536_AF452034_ GAAACCAACAGGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAACAGCTCAAATTTGAAAGCTGACTTT-------CGGGTCCGCATTGTAATTTGTAGAGGATGCTTTTGGTTAGGT-TCCTTCCAAGTGCCCTGGAACGGGTCGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGAAACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGTTTACGACCAGACCTTTTCCAGGCGGATCATCCGGTGTTCTCACCGGTGCACTTCGCCTGGTTTAGGCCAAGCAATCGGTTTTCGCTGGGGGATAAAAGCTTCAGGAACGTGGCT----CCTCC-GGGA-GTGTTAATAGCCTGTTGTATAATACCCTAGCGGGGACCGAGGACCGCGC F136 GAAACCAACAGGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAACAGCTCAAATTTGAAAGCTGACTTT-------CGGGTCCGCATTGTAATTTGTAGAGGATGCTTTTGGTTAGGT-TCCTTCCAAGTGCCCTGGAACGGGTCGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGAAACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGTTTACGACCAGACCTTTTCCAGGCGGATCATCCGGTGTTCTCACCGGTGCACTTCGCCTGGTTTAGGCCA-GCA-TCGGTTTTCGCTGGGGGATAAAAGCTTCAGGAACGTGGCT----CCTCC-GGGA-GTGTT-ATAGCCTGTTGTATAATACCCTAGCGGGGACCGAGGACCGCGC Lanceispora_sp__BCP_3574_AF452032_ GAAACCAACAGGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAACAGCTCAAATTTGAAAGCTGACTTT-------CGGGTCCGCATTGTAATTTGTAGAGGATGCTTTTGGTTAGGT-TCCTTCCAAGTGCCCTGGAACGGGTCGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGAAACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGTTTACGACCAGACCTTTTCCAGGCGGATCATCCGGTGTTCTCACCGGTGCACTTCGCCTGGTTTAGGCCA-GCA-TCGGTTTTCGCTGGGGGATAAAAGCTTCAGGAACGTGGCT----CCTCC-GGGA-GTGTTAATAGCCTGTTGTATAATACCCTAGCGGGGACCGAGGACCGCGC Amphisphaeria_umbrina_FJ176863_ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGCTAAATA-TGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTTTTCTAGGCGGATCATCTGGTGTTCTCACCGGTGCACTTTGCCTAGTCTAGGCCA-GCA-TCGGTTTCTATAGGGGGATAAAATCAGTGGGAATGTGGCT---CCCTC--GGGA-GTGTT-ATAGCCCGTTGAATAATACCCTTACGGGGACCGAGGTTCGCGC Truncatella_restionacearum_DQ278929_ -------------ATTGCCTTAGTAACGGCGAGTGAAGCGGCAATAGCTCAAATTTGAAATCTGGCGCT-------TGCGTCCGAGTTGTAATTTGTAGAGGATGATTTTGGTTAGGT-ACCTTTCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGATTGGATGCCGAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGAGGATCATCCGGTGTTCTCACCGGTGCACTTCTTCTAGTTTAGGCCA-GCA-TCGACTTCTGGCGGCGGATAAAAGCTTCAGGAATGTGGCT---CCCTACGGGGA-GTGTT-ATAGCCTGTTGTATAATACGCTGCTGGGGGTCGAGGTACGCGC Dyrithiopsis_lakefuxianensis_AF452047_ GAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAATAGCTCAAATTTGAAATCTGGCGCT-------TGGGTCCGAGTTGTAATTTGTAGAGGATGATTTTGGTTAGGT-ACCTTTCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGATTGGATGCCGAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGAGAATCATCCGGTGTTCTCACCGGTGCACTTCTTTCAGTTTAGGCCA-GCA-TCGACTTTCGGCGGCGGATAAAAGCTTCAGGAATGTGGCT--CCTCTC-GGGGA-GTGTT-ATAGCCTGTTGTATAATACGCTGCTGGGGGTCGAGGTACGCGC Bartalinia_lateripes_AF382368_ GAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGCCAATAGCTCAAATTTGAAATCTGGCGCT-------TGGGTCCGAGTTGTAATTTGTAGAGGATGATTTTGCTTAGGT-ACCTTTCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGATTGGATGCCGAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGAGAATCATCCGGTGTTCTCACCGGTGCACTTCTTTTAGTTTAGGCCA-GCA-TCGACTTTCGGCGGTGGATAAAAGCTTTAGGAATGTGGCT--TCTCTC--GGGAAGTGTTAATAGCCTATTGTATAATACACTGCTGGGGGTCGAGGTACGCGC Bartalinia_robillardoides_AF382366_ GAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAATAGCTCAAATTTGAAATCTGGCGCT-------TGCGTCCGAGTTGTAATTTGTAGAGGATGATTTTGGTTAGGT-ACCTTTCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGATTGGATGCCGAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGAGAATCATCCGGTGTTCTCACCGGTGCACTTCTTTTAGTTTAGGCCA-GCA-TCGACTTTCGGCGGTGGATAAAAGCTTTAGGAATGTGGCT--TCTCTC--GGGAAGTGTTAATAGCCTATTGTATAATACACTGCTGGGGGTCGAGGTACGCGC Bartalinia_bischofiae_AF382367_ GAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAATAGCTCAAATTTGAAATCTGGCGCT-------TGCGTCCGAGTTGTAATTTGTAGAGGATGATTTTGGTTAGGT-ACCTTTCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGATTGGATGCCGAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGAGAATCATCCGGTGTTCTCACCGGTGCACTTCTTTTAGTTTAGGCCA-GCA-TCGACTTTCGGCGGTGGATAAAAGCTTTAGGAATGTGGCT--TCCCTCG-GGGAAGTGTT-ATAGCCTATTG-ATAATACACTGCTGGGGGTCGAGGTACGCGC Bartalinia_laurina_AF382369_ GAAACCAACAGGGATTGCCTTAGTAACGGCGAGTGAAGCGGCAATAGCTCAAATTTGAAATCTGGCGCT-------TGCGTCCGAGTTGTAATTTGTAGAGGATGATTTTGGTTAGGT-ACCTTTCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGATTGGATGCCGAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGAGAATCATCCGGTGTTCTCACCGGTGCACTTCTTTTAGTTTAGGCCA-GCA-TCGACTTTCGGCGGTGGATAAAAGCTTTAGGAATGTGGCT--TCCCTCC-GGGA-GTGTT-ATAGCCTATTGTATAATACACTGCTGGGGGTCGAGGTACGCGC Seimatosporium_parasiticum_AB593741_ -----------------------------------------------CTCAAATTTGAAATCTGGCCCT-------TGGGTCCGAATTGTAATTTGTAGAGGATGTTTTTGGTGCGGT-ATCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGAATGCCTAGCCTTTGTAAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGCGAATCATCCGGTGTTCTCACCGGTGCACTTCGTTTAGTTTAGGCCA-GCA-TCGATTTTCGAGGCGGGATAAAAGCTTCAGGAATGTGGCT---CCCTC--GGGA-GTGTT-ATAACCTGTTGTATAATACCGCCTTGGGGATCGAGGTACGCGC Seimatosporium_mariae_AB593740_ -----------------------------------------------CTCAAATTTGAAATCTGGCCCT-------TGGGTCCGAATTGTAATTTGTAGAGGATGTTTTTGGTGCGGT-ATCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGAATGCCTAGCCTTTGTAAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGCGAATCATCCGGTGTTCTCACCGGTGCACTTCGTTTAGTTTAGGCCA-GCA-TCGATTTTCGGGGCGGGATAAAAGCTTTAGGAATGTGGCT---CCCTC--GGGA-GTGTT-ATAACCTATTGTATAATACCGCCCTGGGGATCGAGGTACGCGC Seimatosporium_kriegerianum_AB593738_ -----------------------------------------------CTCAAATTTGAAATCTGGCCTT-------CGGGTCCGAATTGTAATTTGTAGAGGATGTTTTTGGTGCGGT-ATCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGAATGCCTAGCCTGTGTAAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTAGGCGAATCATCCGGTGTTCTCACCGGTGCACTTCGTTTAGTTTAGGCCA-GCA-TCGATTTTCGGGGCGGGATAAAAGCTTCAGGAATGTGGCT---CCCTC--GGGA-GTGTT-ATAGCCTGTTGTATAATACCGCCCTGGGGATCGAGGTACGCGC Monochaetia_monochaeta_AF382370_ GAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-------TGGGTCCGAATTGTAATTTGTAGAGGATGATTTTGGTGCGGT-ACCTTCCGAGTTCCTTGGAACAGGACGCCTAAGAGGGTGAGAGCCCCGTACGGTTGGATGCCTAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTGTGACCAGACTTTTTCTGGGCGGATCATCCGGGGTTCTCTCCGGTGCACTTTGCCCAGTATAGGCCA-GCA-TCGATTTTCGGAGGGGGATAAAAGCTTTGGGAATGTGGCTCCCTTCT---GGGA-GTGTT-ATAGCCCATTGTATAATACCTTTCTGGGGATCGAGGTTCGCGC Monochaetia_kansensis_DQ534037_ -AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-------TGGGTCCGAATTGTAATTTGTAGAGGATGATTTTGGTGCGGT-ACCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGATACCTAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTGGGCAGATCATCCGGTGTTCTCACCGGTGCACTTTGCCCAGTTTAGGCCA-GCA-TCGATTTCCGGAGGGGGATAAAAGCTTTAGGAATGTGGCT---CCCTC--GGGA-GTGTT-ATAGCCTATTGTATAATACCTTTCTGGGGATCGAGGTACGCGC Seiridium_eucalypti_DQ414533_ ----------------GCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-------TGGGTCCGAATTGTAATTTGTAGAGGATGATTTTGGTGCGGT-ATCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGAATGCCTAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTGGGCGGATCATCCGGTGTTCTCACCGGTGCACTTTGCCCAGTTTAGGCCA-GCA-TCGATTTTCGGAGAGGGATAAAAGCTTTGGGAATGTGGCT----CCTCC-GGGA-GTGTT-ATAGCCCATTGTATAATACCTTTCTGGGGATCGAGGTACGCGC Seiridium_unicorne_DQ414532_ ----------------GCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-------TGGGTCCGAATTGTAATTTGTAGAGGATGATTTTGGTGCGGT-ATCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGAATGCCTAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTGGGCGGATCATCCGGTGTTCTCACCGGTGCACTTTGCCCAGTTTAGGCCA-GCA-TCGATTTTCGGAGAGGGATAAAAGCTTTGGGAATGTGGCT----CCTCC-GGGA-GTGTT-ATAGCCCATTGTATAATACCTTTCTGGGGATCGAGGTACGCGC Seiridium_papillatum_DQ414531_ ----------------GCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT-------TGGGTCCGAATTGTAATTTGTAGAGGATGATTTTGGTGCGGT-ATCTTCCGAGTTCCTTGGAACAGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGAATGCCTAGCCTCTGTAAATCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGGATTTATGACCAGACTTTTTCTGGGCGGATCATCCGGTGTTCTCACCGGTGCACTTTGCCCAGTTTAGGCCA-GCA-TCGATTTTCGGATAGGGATAAAAGCTTTAGGAATGTGGCA---CCCTCCGGGGT-GTGTT-ATAGCCTATTGTATAATACCTTTCTGGGGATCGAGGTACGCGC Linocarpon_appendiculatum_AY346291_ GAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCCCGCCCGGGGGCCCGAGTTGTAATTTGCAGAGGATGCTTCGGGCGCGGCGGCCTTCTGAGTCCCCTGGAACGGGGCGCCGCAGAGGGTGAGAGCCCCGTACCGTCGGCCGCCAAGCCCGCGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTACAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGGCCAGACGTGCGCCGGGCGGATCACCCAGCGTTCTCGCTGGTGCACTCCGCCCGGCGCAGGCCA-GCA-TCGGTTCCCGCGGGGGGACAAAAGCGCCGGGAACGTAGCT--CCCCCCCGGGGA-GTGTT-ATAGCCCGGGGCACAATGCCCCCGCGGGGACCGAGGTCCGCGC Linocarpon_elaeidis_DQ810222_ -------------ATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTTC---------GGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGT-GCCTTCTGAGTTCCCTGTAACGGGACGCCTTAGAGGGTGAGAGCCCCGTAAAGTTGGACACCAAGCCTATGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTATGACCAGACTTGTGCCCTGCGGATCATCCAGCCTTCTGGCTGGTGCACTTCGCTTGGTTCAGGCCA-GCA-TCGGTTCTCTGAGGGGGATAAAAGCTTCAGGGACGTGGCT---CC-TCC-GGGA-GCGTT-ATAACCTGTTGCAAAATACCCCTCGGGGGACCGAGGTTCGCGC ; END; BEGIN TREES; Title LanceisporaMB; LINK Taxa = Taxa; TRANSLATE 1 Monographella_nivalis_Var_nivalis_FJ614651_, 2 Leiosphaerella_sp__HKUCC_6135_AF452037, 3 Leiosphaerella_sp__HKUCC_7685_AF452036_, 4 Lanceispora_sp__HKUCC_7284_AF452035_, 5 Lanceispora_sp__BCP_3536_AF452034_, 6 F136, 7 Lanceispora_sp__BCP_3574_AF452032_, 8 Amphisphaeria_umbrina_FJ176863_, 9 Truncatella_restionacearum_DQ278929_, 10 Dyrithiopsis_lakefuxianensis_AF452047_, 11 Bartalinia_lateripes_AF382368_, 12 Bartalinia_robillardoides_AF382366_, 13 Bartalinia_bischofiae_AF382367_, 14 Bartalinia_laurina_AF382369_, 15 Seimatosporium_parasiticum_AB593741_, 16 Seimatosporium_mariae_AB593740_, 17 Seimatosporium_kriegerianum_AB593738_, 18 Monochaetia_monochaeta_AF382370_, 19 Monochaetia_kansensis_DQ534037_, 20 Seiridium_eucalypti_DQ414533_, 21 Seiridium_unicorne_DQ414532_, 22 Seiridium_papillatum_DQ414531_, 23 Linocarpon_appendiculatum_AY346291_, 24 Linocarpon_elaeidis_DQ810222_; TREE con_50_majrule = (1:0.082771,((9:0.015154,10:0.005758,(11:0.008286,12:0.002499,(13:0.004329,14:0.002324)0.62:0.004031)0.89:0.01294)1.00:0.050219,(((15:0.007768,16:0.004951,17:0.013195)1.00:0.038803,((20:0.002302,21:0.002331)0.88:0.006228,22:0.010042)0.59:0.006792)0.53:0.009193,18:0.026336,19:0.009567)0.96:0.020373)1.00:0.032424,((((2:0.006712,3:0.002337)0.65:0.007525,(4:0.011441,5:0.002243,6:0.002282,7:0.002263)1.00:0.023029)1.00:0.053297,8:0.0935)0.51:0.016737,(23:0.167581,24:0.072926)1.00:0.060025)0.99:0.041097); TREE con_50_majrule = (1:0.082771,((9:0.015154,10:0.005758,(11:0.008286,12:0.002499,(13:0.004329,14:0.002324):0.004031):0.01294):0.050219,(((15:0.007768,16:0.004951,17:0.013195):0.038803,((20:0.002302,21:0.002331):0.006228,22:0.010042):0.006792):0.009193,18:0.026336,19:0.009567):0.020373):0.032424,((((2:0.006712,3:0.002337):0.007525,(4:0.011441,5:0.002243,6:0.002282,7:0.002263):0.023029):0.053297,8:0.0935):0.016737,(23:0.167581,24:0.072926):0.060025):0.041097); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 544; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 544; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 544; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374683363090; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4295826386190720098; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2759467887795404929; mqVersion 275; checksumv 0 3 2195593618 null getNumChars 544 numChars 544 getNumTaxa 24 numTaxa 24 short true bits 15 states 15 sumSquaresStatesOnly 264917.0 sumSquares 264917.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 237; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 924 633; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4295826386190720098 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4295826386190720098; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 687 566; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4295826386190720098 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1353.1309886310956.1896890641787399785; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 687 566; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((23:0.167581,24:0.072926)1.00:0.0300125,((8:0.0935,((2:0.006712,3:0.002337)0.65:0.007525,(4:0.011441,5:0.002243,6:0.002282,7:0.002263)1.00:0.023029)1.00:0.053297)0.51:0.016737,(1:0.082771,((9:0.015154,10:0.005758,(11:0.008286,12:0.002499,(13:0.004329,14:0.002324)0.62:0.004031)0.89:0.01294)1.00:0.050219,(18:0.026336,19:0.009567,((15:0.007768,16:0.004951,17:0.013195)1.00:0.038803,(22:0.010042,(20:0.002302,21:0.002331)0.88:0.006228)0.59:0.006792)0.53:0.009193)0.96:0.020373)1.00:0.032424):0.041097)0.99:0.0300125);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2759467887795404929 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 687 566; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;