#NEXUS [written Wed Jul 24 16:59:41 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Daldinia_bambusicola_AB376692_ Daldinia_eschscholzii_AB376720_ Hypoxylon_crocopeplum_AB376695_ Annulohypoxylon_moriforme_AB376706_ Hypoxylon_haematostroma_AB376728_ Hypoxylon_perforatum_AB376735_ Hypoxylon_Cf_symphyon_AB376769_ Hypoxylon_dieckmannii_AB376813_ Hypoxylon_duranii_AB376815_ Hypoxylon_Cf_subgilvum_AB376816_ Hypoxylon_Cf_trugodes_AB376817_ Annulohypoxylon_nitens_AB376819_ Hypoxylon_macrocarpum_AB376824_ Hypoxylon_monticulosum_AB376827_ Hypoxylon_fragiforme_AY083829_ Annulohypoxylon_atroroseum_DQ840060_ Hypoxylon_monticulosum_DQ840067_ Hypoxylon_subgilvum_DQ840068_ F108 F151 F114 F084 F193 F342 ; END; BEGIN CHARACTERS; TITLE Xylariaceae1MB; DIMENSIONS NCHAR=540; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Daldinia_bambusicola_AB376692_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGACGCCAAACCTCTGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGCGTTC-TCGCCGGT-GCACTCCGCCTGGTTGAGGCCAGCATCGGTTTC-CTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCCTTCGGGAGTGTTATAGCCCCTGGCGCAATACCCCT-CGGGGGA-CCGAGGACCGCGCTTC Daldinia_eschscholzii_AB376720_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGACGCCAAACCTCTGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACTTTTTCC-AG-GCGGATCATCCGGCGTTC-TCGCCGGT-GCACTCCGCCTGGTTGAGGCCAGCATCGGTTTC-CTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCCTTCGGGAGTGTTATAGCCCCTGGCGTAATACCCCT-CGGGGGA-CCGAGGAACGCGCT-C Hypoxylon_crocopeplum_AB376695_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCT-TCG-GGTCCGAATTGTAATTTGCAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGACACTAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTACGGCCAGACCTTTTCCTA--GCGGATCATCTAGTGTTC-TCACTGGT-GCACTTCGTTAGGTTTAGGCCAGCATCGGCTTCT-GTAGAGGGATAAAAGC-AGT-GGGAAAGTAGCTCTCTCGGGAGTGTTATAGCCCTAAGCATAATACCTTTACGGGGG--CCGAGGACCGCGCTTT Annulohypoxylon_moriforme_AB376706_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTAGCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCT-AG-GGGGATCATCTGGTGTTC-TCACCGGT-GCACTCCCCGTAGTTTAGGCCAGCATCGGTTT-TCTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCTTTAGGGAGTGTTATAGCCCCTGGCATAATACCCCT-CGGGGGA-CCGAGGACCGCGCTTC Hypoxylon_haematostroma_AB376728_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TCGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGACGCCTAGCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACTTTTTCC-AG-GGGAATCATCCGGTGTTC-TCACCGGT-GCACTTCCCCTGGTTTAGGCCAGCGTCGGTT-CTCTTAGGGGGATAAAGGC-T-TGGGGAACGTAGCTCTTTCGGGAGTGTTATAGCCCCTCGCGTAATACCCTT-CGGGGGA-CCGAGGATCGCGCT-C Hypoxylon_perforatum_AB376735_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TTGCGGTCCGAATTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTAGCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACTTTTTCC-AG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGTCTGGTTTAGGCCAGCATCGGTTT-TCTTAGGGGGATAAAGGC-T-TGGGGAACGTAGCTCTTTCGGGAGTGTTATAGCCCCTTGCGTAATACCCCT-CGGGGGA-CCGAGGAACGCGCT-C Hypoxylon_Cf_symphyon_AB376769_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TCGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGCGGCGCCTTCCAAGTTCCCTAGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGACGCCTAGCCTATGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGTACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGCGTTC-TCGCCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTT-TCCCAGGGGGATAAAGGCG--GCGGGAACGTAGCTCTTTCGGGAGTGTTATAGCCCGCCGCGTAATACCCTT-GGGGGGA-CCGAGGACCGCGCTTC Hypoxylon_dieckmannii_AB376813_ AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCCGGCCCCTGGCGGCCTGAGTTGTAATTTGTAGAGGAAGCTTTAGGCGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGACGCCTAGCCTATGTATGGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGTTTACGTCCAGAGCTAGGCC-TG-GCGGATCCCACGGCGATCGCCGCCGATGGTACTCCGCC-GGCCTAGGCCAGCATCGGTT-CTCTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCCCTAGGGAGTG-TATAGCCCCTCGCGTAATACCCCT-CGGGGGA-CCGAGGACCGCGCATT Hypoxylon_duranii_AB376815_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGTTAGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGCCACCAAGCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTCTCC-AG-GCGGATCATCCGGGGTTC-TCCCCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTT-CTCTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCTTTCGGGAGTGTTATAGCCCCTGGCGTAATACCCTT-CAGGGGA-CCGAGGACCGCGCTTC Hypoxylon_Cf_subgilvum_AB376816_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGTGGTCCGAATTGTAATTTGTAGAGGATGCTTTTGGCACGGTGCCTTCTGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTAGCCTATACATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-TG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGCTTAGGCCAGCATCGGTT-CTCTTAGGGGGATAAAGGCC--GGGGGAACGTAGCTCTCTAGGGAGTGTTATAGCCCCCAGCGTAATACCCTT-CGGGGGA-CCGAGGACCGCGCTTC Hypoxylon_Cf_trugodes_AB376817_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TCGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGAC-CCAGAGAGGGTGAGAGCCCCGTACGGTTGGACGCCTAGCCTATCTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GGG-ATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTTC-CCCCGGGGGATAAAGGC-T-TAAGGCATGTAGCTCTTTCGGGAGTGTTATAGCCCTCTGCGTAATACCCTG-GGGGGGA-CCGAGGATCGCGCT-C Annulohypoxylon_nitens_AB376819_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTACCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTT-TCTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCTTTAGGGAGTGTTATAGCCCCTCGCGTAATACCCCT-CGGGGGA-CCGAGGACCGCGCT-C Hypoxylon_macrocarpum_AB376824_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TCGTGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTACCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGAACATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTTC-CTTAGGGGGATAAAGGCCT-T-GGGAACGTAGCTCTTTAGGGAGTGTTATAGCCCTTGGCGCAATACCCCT-CGGGGGA-CCGAGGACCGCGCT-C Hypoxylon_monticulosum_AB376827_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCT-TCG-GGTCCGAATTGTAATTTGTAGAGGATGCTTTGGGTGCGGTACCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGATACCAAGCCTATGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTT-TCTTAGGGGGATAAAGG--TTTAGGGCACGTAGCTCCTTCGGGAGTGTTATAGCCCTTTACGTAATACCCTT-CGGGGGA-CCGAGGACCGCGCAT- Hypoxylon_fragiforme_AY083829_ AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCC--TCGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTACCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACTTTTTCC-AG-GGGGATCATCCGGTGTTC-TCACCGGT-GCACTCCGCCTGGTTTAGGCCAGCATCGGTT-CTCTTAGGGGGATAAAGGC-T-TGGGGAACGTAGCTCCTTCGGGAGTGTTATAGCCCCTTGCGTAATA-CCTT-CGGGGGA-CCGAGGATCGCGCT-C Annulohypoxylon_atroroseum_DQ840060_ ---------------GCCCTAGTAACGGCGAGTGAAGCGGCAAAAGCTCCA-TTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGACACCTAGCCTCTATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTCTCC-AG-GGGGATCAACCGTTATTC-TTAGCGGT-GCACTCCCCCTGGTTTAGGCCAGCATCGGTT-CTCTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCTTTAGGGAGTGTTATAGCCCCTAGCGTAATACCCTT-CAGGGGA-CCGAGGACCGCGCTTC Hypoxylon_monticulosum_DQ840067_ ---------------GCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TCGTGGTCCGAATTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTACCCTATATATAGCTCCTTCGACGAGTCGGGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTT-CTCGTAGGGGGACAAAGGCC--TGGGGAACGTATCTCCTTCGGGAGTGTTATAGCCCCTCGCGTAATACCCTTAC-GGGGA-CCGAGGACCGCGCT-C Hypoxylon_subgilvum_DQ840068_ ---------------GCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCT-TCG-GGTCCGAATTGTAATTTGTAGAGGATGCTTTGGGTGCGGTACCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGATACCAAGCCTATGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTT-TCTTAGGGGGACAAAGG--TTTAGGGCACGTAGCTCCTTCGGGAGTGTTATAGCCCTTTACGTAATACCCTT-CGGGGGA-CCGAGGACCGCGCAT- F108 AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGACACCTAGCCTCTATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTCTCC-AG-GGGGATCAACCGCTGTTC-TCAACGGT-GCACTCCCCCTGGTTTAGGCCAGCATCGGTT-CTCTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCTTTAGGGAGTGTTATAGCCCCTAGCGTAATACCCTT-CAGGGGA-CCGAGGACCGCGC--- F151 AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGATACCTAGCCTCTATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTCTCC-AG-GGGGATCAACCGCTGTTC-TCAGCGGT-GCACTCCCCCTGGTTTAGGCCAGCATCGGTT-CTCTTAGGGGGATAAAGGCC--TGGGGAACGTAGCTCTTTAGGGAGTGTTATAGCCCCTAGCGTAATACCCTT-CAGGGGA-CCGAGGACCGCGC--- F114 AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGCGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTACCCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTT-TCTTAGGGGGATAAAGGC-T-TGGGGAACGTAGCTCTTTAGGGAGTGTTATAGCCCCTTGCGTAATACCCCT-CGGAGGA-CCGAGGACCGC----- F084 AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAATAGCTCAAATTTGAAATCTGGCCC-TCGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACGGTTGGACGCCTAACCTATATATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AGTGAGGATCATCCGGTATTCGT-ACCGGT-GCACTTGTCCTGGATTAGGCCAGCATCGGTTT-TCTTAGGGGGATAAAGGC-T-TGGGGAACGTAGCTCTTCAGGGAGTGTTATAGCCCCTTGCGTAATACCCCT-CGGGGGA-CCGAGGACCGCGC--- F193 AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCT-TCG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGTGCGGTACCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGATACCAAGCCTATGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGTGTTC-TCACCGGT-GCACTTCGCCTGGTTTAGGCCAGCATCGGTTT-TCTTAGGGGGATAAAGG--TTTAGGGCACGTAGCTCCTTCGGGAGTGTTATAGCCCTCTACGTAATACCCTT-CGGGGGA-CCGAGGACCGCGC--- F342 AAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCC-TAGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACGGTTGGACACCTAGCCTCTGTATAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACCTTTTCC-AG-GCGGATCATCCGGCGTTC-TCGCCGGT-GCACTTCGTCTGGTTTAGGCCAGCATCGGTTT-TATTAGGGGGATAAAGGC-T-CGGGGAACGTGGCTCCTTCGGGAATGGTATAGCCCCTTGCGTAATACCTTTA-GGGGGACCCGAGGACCGCG---- ; END; BEGIN TREES; Title Xylariaceae1MB; LINK Taxa = Taxa; TRANSLATE 1 Daldinia_bambusicola_AB376692_, 2 Daldinia_eschscholzii_AB376720_, 3 Hypoxylon_crocopeplum_AB376695_, 4 Annulohypoxylon_moriforme_AB376706_, 5 Hypoxylon_haematostroma_AB376728_, 6 Hypoxylon_perforatum_AB376735_, 7 Hypoxylon_Cf_symphyon_AB376769_, 8 Hypoxylon_dieckmannii_AB376813_, 9 Hypoxylon_duranii_AB376815_, 10 Hypoxylon_Cf_subgilvum_AB376816_, 11 Hypoxylon_Cf_trugodes_AB376817_, 12 Annulohypoxylon_nitens_AB376819_, 13 Hypoxylon_macrocarpum_AB376824_, 14 Hypoxylon_monticulosum_AB376827_, 15 Hypoxylon_fragiforme_AY083829_, 16 Annulohypoxylon_atroroseum_DQ840060_, 17 Hypoxylon_monticulosum_DQ840067_, 18 Hypoxylon_subgilvum_DQ840068_, 19 F108, 20 F151, 21 F114, 22 F084, 23 F193, 24 F342; TREE con_50_majrule = (1:0.006168,2:0.00917,(3:0.144563,(((4:0.037047,((16:0.014703,20:0.005907)0.57:0.0051,19:0.004672)1.00:0.036931)0.91:0.014511,(8:0.166364,10:0.030666)0.77:0.020062,(12:0.004553,13:0.020386,21:0.006669)0.61:0.007393,22:0.036403)0.72:0.008713,(5:0.029735,15:0.013429)0.50:0.010495,6:0.022995,(7:0.065067,11:0.038104)0.89:0.026166,((14:0.003007,18:0.00597)0.74:0.006707,23:0.006629)1.00:0.042554,17:0.025931,24:0.041286)0.67:0.014373,9:0.042394)1.00:0.030877); TREE con_50_majrule = (1:0.006168,2:0.00917,(3:0.144563,(((4:0.037047,((16:0.014703,20:0.005907):0.0051,19:0.004672):0.036931):0.014511,(8:0.166364,10:0.030666):0.020062,(12:0.004553,13:0.020386,21:0.006669):0.007393,22:0.036403):0.008713,(5:0.029735,15:0.013429):0.010495,6:0.022995,(7:0.065067,11:0.038104):0.026166,((14:0.003007,18:0.00597):0.006707,23:0.006629):0.042554,17:0.025931,24:0.041286):0.014373,9:0.042394):0.030877); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 540; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 540; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 540; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374685181732; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8139313342364050016; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5090622916174059904; mqVersion 275; checksumv 0 3 377156291 null getNumChars 540 numChars 540 getNumTaxa 24 numTaxa 24 short true bits 15 states 15 sumSquaresStatesOnly 260423.0 sumSquares 260423.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 117; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1240 683; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8139313342364050016 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8139313342364050016; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1123 616; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8139313342364050016 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 865.1306774770140.7533323574188168012; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1123 616; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setTree '(1:0.003084,(2:0.00917,(3:0.144563,9:0.042394,(6:0.022995,17:0.025931,24:0.041286,(5:0.029735,15:0.013429):0.010495,(7:0.065067,11:0.038104):0.026166,(23:0.006629,(14:0.003007,18:0.00597):0.006707):0.042554,(22:0.036403,(8:0.166364,10:0.030666):0.020062,(12:0.004553,13:0.020386,21:0.006669):0.007393,(4:0.037047,(19:0.004672,(16:0.014703,20:0.005907):0.0051):0.036931):0.014511):0.008713):0.014373):0.030877):0.003084);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5090622916174059904 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1123 616; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;