#NEXUS [written Wed Jul 24 16:13:48 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=13; TAXLABELS Colletotrichum_agaves_DQ286221 F101 F496 Colletotrichum_crassipes_EU294262_ Colletotrichum_fragariae_AJ301912_ F163 Colletotrichum_gloeosporioides_EU552111_ Colletotrichum_coccodes_AJ301984_ Colletotrichum_truncatum_AJ301945_ Colletotrichum_dematium_AJ301954_ Monilochaetes_infuscans_GU180644_ Monilochaetes_guadalcanalensis_GU180640_ Colletotrichum_boninense_DQ286169_ ; END; BEGIN CHARACTERS; TITLE ColletotrichumMB; DIMENSIONS NCHAR=1142; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Colletotrichum_agaves_DQ286221 GGAGGGATCATTATCGAG-TTACCGCTCCCTATAACCCTTTGTGAACATACCTTCAACTGTTGCTTCGGCGGGTAGGCCG---------TTCCCCTGAAAAGGACGC-CTCCCGGCCGCCGGCCCGG-AACC--CCC-CCGCTCGCGGGGGCCCGGACGCGGGGCGCCCGCCGGAGGGTAACCAAACTCTGATTTAACGACGTTTCTTCTGAGTGATACAAGCAAAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAAGCACCGCTTGGCGTTGGGGCCCTACGGTTCACGTAGGCCTTCAAAGGTAGTGGCGGACCCTTCCCGGAGCCTCCTTTGCGTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- F101 -----GATCATTATCGAG-TTACCACTC--TATAACCCTTTGTGAACATACCTACA--TGTTGCTTCGGCGG-------------------------------------TC--GGCCCCCCG---GG-CCCCC-GGCCCCGCTC------------ACGCGGGGCGTCCGCCGGAGGATAACCAAACTCTGATTTAACGACGTTTCTTCTGAGTGGCACAAGC-AAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCCCAAAACTAGTGGCGGACCC-TCTCGGAGCCTCCTTTGCGTAGTAACTTTT-GTCTCGCACTGGGATTCGGAGGGATTCTAGCCGTTAAACCCCC-AA--TTTTCTAAA-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGTCCTTGCGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCAAGTTCCCTGGAACGGGACGCCTTAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCGGCTCAGGCCAGCATCAGCTTGCCGTCGGGGACAAAAGCTTCGGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCCGTTGCACAATACCCTTCGGCGGGCTGAGGTACGC F496 --------------TGAG-TTACCGCTC--TATAACCCTTTGTGAACACATCTACAACTGTTGCTTCGGCGGGTAGGCCG----------TCCCCTGAAAAGGACGC-CTCCCGGCCC-------GG--ACC--GGACCCCCTG---TGGGACCGGACCC--GGCGCCCGCCGGAGGATAACCAAACTCTATTTTAACGACGTTTCTTCTGAGTGGCATAAGCAAAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTCGACGTAGGCCCTCAAAGGTAGTGGCGGACCC-TCCCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCC-AA--TTTTCCAAA-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCC--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTATGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCGGCTCAGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCCGTTGCACAATACCCTTCGGCGG------------ Colletotrichum_crassipes_EU294262_ AAAAGGAT-ATT-CTGAGTTTA-CGCTC--TACAACCCTTTGTGAACATACCTATAACTGTTGCTTCGGCGGGCAGGG------------TCTCC-----GTGA-CC-CTCCCGGCC---TCCC-GC-CCCC--GGG-CGGGTC------------------GGCGCCCGCCGGAGGATAACCAAACTCTGATTTAACGACGTTTCTTCTGAGTGGTACAAGC-AAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACGGCTGACGTAGGCCCTCAAAGGTAGTGGCGGACCC-TCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAA-CCCCCAA--TTTTCCAAA-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCC--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGAGGTGCCTTCCAAGTTCCCTAGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACAGTTGGACACCGAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTCGCCGGCTCAGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCAGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGCGGGCTGAGGTACGC Colletotrichum_fragariae_AJ301912_ GGAGGGATCATTACTGAGTTTA-CGCTC--TACAACCCTTTGTGAACATACCTACAACTGTTGCTTCGGCGGGTAGGG------------TCCCC-----GTGA-CC-CTCCCGGCC---TCCC-GC-CCCCCCGGG-CGGGTC------------------GGCGCCCGCCGGAGGATAACCAAACTCTGATTTAACGACGTTTCTTCTGAGTGGTACAAGC-AAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCC-TCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAA--TTTTCCAAA-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCAAGTTCCCTAGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACAGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTCGCCGGCTCAGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCACAATACCCTTCGGCGGGCTGAGGTACGC F163 GGA-GGATCATTACTGAG-TTA-CGCTC--TA-AACCCTTTGTGAACATACCTATAACTGTTGCTTCGGCGGGTAGGG------------TCTCC-----GCGA-CC-CTCCCGGCC---TCCC-GC-CTCC--GGG-CGGGTC------------------GGCGCCCGCCGGAGGATAACCAAACTCTGATTTAACGACGTTTCTTCTGAGTGGTACAAGC-AAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCC-TCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAA--TTTTCCAAA-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCAAGTTCCCTAGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACAGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTCGCCGGCTCAGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCAGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCACAATACCCTTCGGCGGGCTGA------- Colletotrichum_gloeosporioides_EU552111_ GGAGGGATCATTACTGAGTTTA-CGCTC--TATAACCCTTTGTGAACATACCTATAACTGTTGCTTCGGCGGGTAGGG------------TCTCC-----GTGA-CC-CTCCCGGCC---TCCC-GC-CCCC--GGG-CGGGTC------------------GGCGCCCGCCGGAGGATAACCAAACTCTGATTTAACGACGTTTCTTCTGAGTGGTACAAGC-AAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCC-TCCCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAA--TTTTCCAAA-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCAAGTTCCCTAGAACGGGACGCCAGAGAGGGTGAGAGCCCCGTACAGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTCGCCGGCTCAGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCAGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGCGGGCTGAGGTACGC Colletotrichum_coccodes_AJ301984_ GGAGGGATCATTACTGAG-TTACCGCTC--TACAACCCTTTGTGAACATACCT-CAACTGTTGCTTCGGCGGGCAGGAGGACAACCCCCCTCGGGGGGCGGT-CCCC-CTCCCGGCC------GCGCCCTCAC-GGG-C--GT-------------------GGCGCCCGCCGGAGGAT-ACCAAACTCTATTTTAACGACGTTTCTTCTGAGTGGCACAAGC-AAATAATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCTGCTTGGTGTTGGGGCCCTACGGTCGACGTAGGCCCTTAAAGGTAGTGGCGGACCC-TCCCGGAGCCTCCTTTGCGTAGTAACTTAACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCAAAACTTTTACA---GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCC--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTCGCCGGCACAGGCCAGCATCAGCTTGCCGTCGGGGACAAAAGCTTCAGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGCGGGCTGAGGTACGC Colletotrichum_truncatum_AJ301945_ GGAGGGATCATTACTGAG-TTACCGCTC--ATCAACCCTTTGTGAACATACCT-TAACTGTTGCTTCGGCGGGTAGGCG-----------TCCCCTAAAAAGGACGT-CTCCCGGCCCTCTCCC-GT-CC------G-CGGGTGG-----------------GGCGCCCGCCGGAGGATAACCAAACTCTGATTTAACGACGTTTCTTCTGAGTGACACAAGC-AAATAATCAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCC-TCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCATTGGGATTCGGAGGGACTCTAGCCGTAAAACCCCC-AA--TTTTACTAA-GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCC--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGTCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCATTTTGCCGGCTCAGGCCAGCATCAGCTTGCCGTCGGGGACAAAAGCTTCGGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCCGTTGCATAATACCCTTCGGTGGGCTGAGGTACGC Colletotrichum_dematium_AJ301954_ GGAGGGATCATTACTGAG-TTACCGCTC--TATAACCCTTTGTGAACATACC--TAACTGTTGCTTCGGCGGGCAGGGGG----------TCCCCT--CGGGGACGCCCTCCCGGCC-ACGCCC-TT-CACG--GGG-C--GA-------------------GGCGCCCGCCGGAGGAT-ACCAAACTCTATTTTAACGACGTTTCTTCTGAGTGGCACAAGC-AAATAATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCC-TCTCGGAGCCCCCTTTGCGTAGTAAC-TAACGTCTCGCATTGGGATTCGGAGGGACTCTTGCCGTAAAACCCCTAAA---TTTTCTAATGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCT--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGCCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTGTGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCGGCACAGGCCAGCATCAGCTTGCCGTCGGGGACAAAAGCTTCAGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCTGTTGCATAATACCCTTCGGCGGGCTGAGGTACGC Monilochaetes_infuscans_GU180644_ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCC--GGGCCCGAGTTGTAATTTGCAGAGGATGCTTTGGGCGCGGCGCCTTCCGAGTTCCCTGGGACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTCGGACGCCCAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCATCCAGCCTTC-TGGCTGGTGCACTTCGCCGGCCCAGGCCAGCATCAGCTCGCCGTCGGGGACAAAAGCTTCGGGAACGTAGCTCCTCTCGGGGAGTGTTATAGCCCGCTGCACAATACCCTTCGGCGGGCTGAGGTACGC Monilochaetes_guadalcanalensis_GU180640_ -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCC--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTGGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTCGGACGCCTAGCCTGTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAGGGGAAGCGCTTGTGACCAGACTTGCGTCCGGTGAATCATCCAGCCTTC-TGGCTGGTGCACTTCGCCGGCTCAGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGAACGTAGCTCCTCTCGGGGAGTGTTATAGCCCGTTGCACAATACCCTTCGGTGGGCTGAGGTACGC Colletotrichum_boninense_DQ286169_ ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTCGACGTAGGCCCTCAAAGGTAGTGGCGGACCC-TCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCACTGGGATTCGGAGGGACTCTTGCCGTAAAACCCCCAAA--TTTTTCAA--GGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCC--AGGCCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGACACCAAGTCTTTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTAAAAGGGAAGCGCTTATGACCAGACTTGCGCCCGGTGAATCACCCAGCTCTCGCGGCTGGGGCACTTTGCCGGCTCAGGCCAGCATCAGCTCGCTGTCGGGGACAAAAGCTTCGGGAACGTAGCTCTCTTCGGGGAGTGTTATAGCCCGTTGCATAATACCCTTCGGCGGGCTGAGGTACGC ; END; BEGIN TREES; Title ColletotrichumMB; LINK Taxa = Taxa; TRANSLATE 1 Colletotrichum_agaves_DQ286221, 2 F101, 3 F496, 4 Colletotrichum_crassipes_EU294262_, 5 Colletotrichum_fragariae_AJ301912_, 6 F163, 7 Colletotrichum_gloeosporioides_EU552111_, 8 Colletotrichum_coccodes_AJ301984_, 9 Colletotrichum_truncatum_AJ301945_, 10 Colletotrichum_dematium_AJ301954_, 11 Monilochaetes_infuscans_GU180644_, 12 Monilochaetes_guadalcanalensis_GU180640_, 13 Colletotrichum_boninense_DQ286169_; TREE con_50_majrule = (1:0.061358,2:0.029077,((3:0.012803,13:0.003932)0.91:0.01434,(((4:0.011206,((5:0.005032,6:0.003577)0.51:0.002425,7:0.001936)0.66:0.004504)1.00:0.035368,(8:0.032713,10:0.018788)0.95:0.019277)0.94:0.019361,9:0.02041)0.63:0.012985,(11:0.03485,12:0.006835)0.98:0.091402)0.72:0.024905); TREE con_50_majrule = (1:0.061358,2:0.029077,((3:0.012803,13:0.003932):0.01434,(((4:0.011206,((5:0.005032,6:0.003577):0.002425,7:0.001936):0.004504):0.035368,(8:0.032713,10:0.018788):0.019277):0.019361,9:0.02041):0.012985,(11:0.03485,12:0.006835):0.091402):0.024905); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1142; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1142; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1142; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374682428387; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9202474711906442392; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6734611411015157998; mqVersion 275; checksumv 0 3 1572112446 null getNumChars 1142 numChars 1142 getNumTaxa 13 numTaxa 13 short true bits 15 states 15 sumSquaresStatesOnly 244123.0 sumSquares 244123.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 117; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 48 47; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #9202474711906442392 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #9202474711906442392; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 583 397; setLocation 48 47; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #9202474711906442392 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 865.1306666343419.5599883412800239214; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 583 397; setLocation 48 47; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((11:0.03485,12:0.006835)0.98:0.045701,((1:0.061358,2:0.029077):0.024905,(3:0.012803,13:0.003932)0.91:0.01434,(9:0.02041,((8:0.032713,10:0.018788)0.95:0.019277,(4:0.011206,(7:0.001936,(5:0.005032,6:0.003577)0.51:0.002425)0.66:0.004504)1.00:0.035368)0.94:0.019361)0.63:0.012985)0.72:0.045701);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6734611411015157998 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 583 397; setLocation 48 47; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;