#NEXUS [written Wed Jul 24 16:27:04 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=34; TAXLABELS Hypomyces_armeniacus_AF160239_ Hypomyces_odoratus_AF160240_ Nectria_haematococca_AY489729_ Pseudonectria_rousseliana_PRU17416_ Lecanicillium_lecanii_EF464573_ Nectria_cinnabarina_HM484756_ Nectria_atrofusca_AF178392_ Nectria_radicicola_NRU88132_ Neocosmospora_endophytica_NEU17411_ Mycoarachis_inversa_GQ505991_ F481 Nectria_lamyi_HM484569_ Nectria_coryli_HM484566_ Nectria_pyrrhochlora_HM484570_ Nectria_zanthoxyli_HM484571_ Nectria_austroamericana_GQ505988_ Nectria_aurigera_HM484573_ Melanospora_fallax_MFU17404_ Nectria_cosmariospora_NCU17407_ F528 Nectriopsis_squamulosa_NSU17423_ Nectriopsis_sporangiicola_AF210662_ Nectria_zonata_NZU17424_ Roumegueriella_rufula_GQ505999_ Nectria_arenula_NAU88121_ Bionectria_pityrodes_AF210672_ Bionectria_coronata_AF210667_ Bionectria_rossmaniae_AF210665_ Bionectria_sesquicillii_AF210666_ Bionectria_setosa_AF210670_ Bionectria_grammicospora_AF210678_ Bionectria_epichloe_DQ363259_ Bionectria_ochroleuca_AY489716_ Bionectria_ralfsii_AF210676_ ; END; BEGIN CHARACTERS; TITLE HypocrealesMB; DIMENSIONS NCHAR=491; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Hypomyces_armeniacus_AF160239_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGGCCCCTCG-GGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCAAGGTGCCGCCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTCTGGCTGGC-CGCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACTTGGGCTTGGCGGATCATCCGGCGTTCTCGCCGGTGCACTTCGCCTCGCCCAGGCCAGCATCAGTTCGC-GCCGGGGGACAAAAGCTTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCGTT-GCATAATACCCTGGTGCGGA Hypomyces_odoratus_AF160240_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGGCCCCTCG-GGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCAAGGTGCCGCCCGAGTTCCCTGGAACGGGACGCCGCAGAGGGTGAGAGCCCCGTCTGGCTGGC-CACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACTTGGGCTTGGCGAATCATCCGGCGTTCTCGCCGGTGCACTTCGCCTCGCCCAGGCCAGCATCAGTTCGC-GCCGGGGGACAAAAGCTTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCGTT-GCATAATACCCTGGGGCGGA Nectria_haematococca_AY489729_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CTCTC--GGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGAGCGGACAAAGTCCCCTGGAACGGGGCGCCATAGAGGGTGAGAGTCCCGTATCGTCCAATCTCCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTCCCTGGTGCACTCTTCCGGCT-CAGGCCAGCATCAGTTTGC-CCCGGGGGACAAAGGCGTCGGGAATGTGGCTCCCTCCGGGGAGTGTTATAGCCCGGC-GTGTAATACCCTGAGGCGGA Pseudonectria_rousseliana_PRU17416_ AGTGAAGCGGTAACA-GCTCAAATTTGAAATCTGGCCTC-CG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGCGCGG-GCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGATTATGACCAGACTTGGGCTTGGTTGATCATCCGGCGTTCTCGCCGGTGCACTCTTCCGGCC-CAGGCCAGCATCAGTTCGC-TGCGGGGGATAAAGGCGTCGGGAATGTGGCTCCCTC--GGGAGTGTTATAGCCCTTC-GTGCAATGCCCTGCGGTGGA Lecanicillium_lecanii_EF464573_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTTG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGA-CACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGG-CGCGGGGGAAAAAGGCTTTGGGAATGTGGCTCCCTC--GGGAGTGTTATAGCCCATT-GTGTAATACCCTGCGCCGGA Nectria_cinnabarina_HM484756_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTTGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGAGGTACCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-TACCGATCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCTTGGTTAATCATCCAGGGTTCTCCCTGGTGCACTTGGCCAGCC-CAGGCCAGCATCAGTTTGT-CGCGGGGGATAAAGGCGTTGGGAATGTGGCTCCCCC--GGGAGTGTTATAGCCCTTC-GTGTAATACCCTGCTTTAGA Nectria_atrofusca_AF178392_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCCCG-GGCCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CACCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACTTGGGCTTGGTTGATCATCTAGGGTTCTCCCTAGTGCACTCCTCCAGCC-CAGGCCAGCATCAGTTTGC-CCCGGGGGACAAAGGCGTCGGGAATGTGGCTCCCTCCGGGGAGTGTTATAGCCCGTC-GTGTAATACCCTGGGGCGGA Nectria_radicicola_NRU88132_ -------------------------TGAAATCTGG-CCCTCG-GGTCCGAATTGTAATTTGTAGAGGATGCTTTTGGTGAGGTACCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-TACCGATCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTCCCTGGTGCACTCTTCCAGCC-CAGGCCAGCATCAGTTCGC-TGTGGGGGATAAAGGCTTTGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCATT-GTGTAATACCCTGTGGTGGA Neocosmospora_endophytica_NEU17411_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTCG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGTGCGG-GCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CGCCAATCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCTTGGTTGATCATCCAGGGTTCTCCCCGGTGCACTCTTCCAGTC-CAGGCCAGCATCAGTTCGC-CGCGGGGGACAAAAGCTTCGGGAATGTGGCTCCCTC--GGGAGTGTTATAGCCCCCT-GCGCAATACCCTGCGGCGGA Mycoarachis_inversa_GQ505991_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGGCCCCCC--GGCCCGAGTTGTAATTTGCAGAGGATGCTTCTGGCGACGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCCGGTTGTG-CGCCTAGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGCTGAAAGGGAAGCGCTTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGCC-CAGGCCAGCATCAGTTCGC-GCCGGGGGATAAAGGCTTCGGGAATGTAGCTCCCTC--GGGAGTGTTATAGACCGTT-GCGCAATACCCTGGCGCGGA F481 AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGGCCCCTAG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-TACCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCTTGGTTGATCATCCGGCGTTCTCGCCGGTGCACTCTGCCTGTC-CAGGCCAGCATCAGTTCGC-CGTGGGGGATAAAGGCGGTGGGAATGTGGCTCC-TC---GGAGTGTTATAGCCCGCC-GTGCAATACCCTGGG----- Nectria_lamyi_HM484569_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTCGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTACGGTACCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGA-TACCAATCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTGGGCCCGGTTAATCATCCGGCGTTCTCGCCGGTGCACTTTGCCGGCC-CAGGCCAGCATCAGTTCGC-TGCGGGGGAAAAAGGCAGCGGGAATGTGGCTCC-TC---GGAGTGTTATAGCCCGCT-GTGCAATACCCTGTGGTGGA Nectria_coryli_HM484566_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTCGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CACCAATCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTGGGCTTGGTTAATCATCCGGCGTTCTCGCCGGTGCACTTTGCCAGCC-CAGGCCAGCATCAGTTTGC-TGCGGGGGATAAAGGTTTCGGGAACGTAGCTCC-TC---GGAGTGTTATAGCCCGTT-GCGTAATACCCTGTGGTGGA Nectria_pyrrhochlora_HM484570_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTTGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTGGGCTTGGTTAATCATCCGGCGTTCTCGCCGGTGCACTTTGCCAGCC-CAGGCCAGCATCAGTTCGT-CGCGGGGGATAAAGGTAGCGGGAATGTGGCTCC-TC---GGAGTGTTATAGCCCGTT-GCGTAATACCCTGTGGTGGA Nectria_zanthoxyli_HM484571_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTTGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTGGGCTTGGTTAATCATCCGGCGTTCTCGCCGGTGCACTTTGCCAGCC-CAGGCCAGCATCAGTTCGT-CGCGGGGGATAAAGGTAGCGGGAATGTGGCTCC-TC---GGAGTGTTATAGCCCGCT-GCGCAATACCCTGTGGTGGA Nectria_austroamericana_GQ505988_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTCGCGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-TGCCAAACCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTGGGCTCGGTGAATCATCCGGCGTTCTCGCCGGTGCACTTCGCCGGTC-CAGGCCAGCATCGGTTCGCTCGCGGGGGATAAAGGCGTCGGGAATGTGGCTCC-TC---GGAGTGTTATAGCCCTTC-GCACAATACCCTGCGGTGGA Nectria_aurigera_HM484573_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTCGTGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CGCCAAACCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTGGGCTTGGTTAATCATCCGGCGTTCTCGCCGGTGCACTTTGCCAGCC-CAGGCCAGCATCGGTTCGC-TGCGGGGGAGAAAGGCGTCGGGAATGTAGCTCC-TC---GGAGTGTTATAGCCCTTC-GCACAATACCCTGTGGCGGA Melanospora_fallax_MFU17404_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGGCCT-TCG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-TACCAATCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGGGCATGGTTAATCATCCAGCGTTCTCGCTGGTGCACTTGGCCTGCC-CAGGCCAGCATCAGTTCGG-TGCGGGGGATAAAGGCTTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCGTT-GTGCAATACCCTGCGCTGGA Nectria_cosmariospora_NCU17407_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTCG-GGTCCGAGTTGTAATTTGTAGAGGATGCTTTGGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTTGGA-CACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGAGCCCGGTTAATCATCCAGCCTTCTGGCTGGTGCACTTGGCCGGCT-CAGGCCAGCATCAGTTCGG-CGTGGGGGATAAAGACTTCGGGAATGTGGCTCC-TTC-GGGAGTGTTATAGCCCGTT-GTGTAATACCCTGTACTGGA F528 AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCCCG-GGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGCGGCGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCCGGTCGGA-CGCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTACATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACTTGGGCCCGGTTAATCATCCAGCGTTCTCGCTGGTGCACTTGGCCGGCC-CAGGCCAGCATCAGTTCGT-CGCGGGGGATAAAGGCGTCGGGAACGTGGCTCC-TCC-GGGAGTGTTATAGCCCGTTCGCGCAATACCCTGCGGTGGA Nectriopsis_squamulosa_NSU17423_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTCG-GGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGTGCGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCCGGTTGGA-TGCCTAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTGTGACCAGACTTGGGCTCGGTTAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGTC-CAGGCCAGCATCAGTTCGC-CGCAGGGGATAAAGGCTTCGGGAACGTAGCTCCCTC--GGGAGTGTTATAGACCGTT-GCGCAATACCCTGCGGTGGA Nectriopsis_sporangiicola_AF210662_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCCA--GGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGACGAGGTACCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGT-CGCCAAGTCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATACGTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCACATGACCAGACTTGGTC-GGGTTGATCATCCGTCGTTCTCGGCGGTGCACTCTGCCCGAC-CAGGCCAGCATCAGTTCGC-TGCGGGGGATAAAGACGTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCTTC-GTGTAATACCCTGCGGTGGA Nectria_zonata_NZU17424_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCCAG-AG-CCGAGTTGTAATTTGTAGAGGATGTTTCTGGAGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTG---CGCTATGCCTATGTGAAACTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGTGGTGTACGCCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG-AAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACCTGGGC-CGGTTGATCATCCGCCGTTCTCGGTGGTGCACTCTGCCGGCC-CAGGCCAGCATCGGTCTGG-CGCGGGGGTCAAAGGTTCCGGGAATGTGGCTCCCCCCGGGGAGTGTTATAGCCCGTT-GCGTAATACCCTGCGCTGGA Roumegueriella_rufula_GQ505999_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCCCC-GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGA-CGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCTAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACTTGGGC-CGGTTGATCATCCGCCGTTCTCGGCGGTGCACTCTGCCGGCC-CAGGCCAGCATCAGTTTGG-CCCGGGGGATAAAGGCGTCGGGAATGTGGCTCCCTCCGGGGAGTGTTATAGCCCGTC-GCGCAATACCCTGGGCTGGA Nectria_arenula_NAU88121_ -------------------------TGAAATCTGG-CCCCC--GGCCCGAGTTGTAATTTGCAGAGGATGTTTCTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGT-CGCTAAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTACACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACTTGGGC-CGGTTGATCATCCATCGTTCTCGGTGGTGCACTCTGCCGGCT-CAGGCCAGCATCAGTTTGG-CCCGGAGGATAAAGGTTTCGGGAATGTGGCTCCCCCCGGGGAGTGTTATAGCCCGTT-GCGTAATACTCTGGGCTGGA Bionectria_pityrodes_AF210672_ AGTGAAGCGGCAACAGGCTCAAATTTGAAATCTGG-CCCTA--GGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGAAGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGA-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGGTTATGACCAGACTTGGAC-AGGTTGATCATCCACGGTTCTCTGTGGTGCACTCTGCCTGTC-CAGGCCAGCATCAGTTCGC-TTCGGGGGATAAAGACTTTGGGAATGTGGCTCCCTC--GGGAGTGTTATAGCCCATT-GTGCAATACCCTGATCCGGA Bionectria_coronata_AF210667_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCTA--GGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGTCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGAT-TACCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTATGACCAGACTTGAGT-AGGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCTGCT-CAGGCCAGCATCAGTTCGC-TTTGGGGGATAAAAGCTTCGGGAATGTGGCTCCCTC--GGGAGTGTTATAGACCGTT-GCATAATACCCTGGAGCGGA Bionectria_rossmaniae_AF210665_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG--CGCA--AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGT-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTATGACCAGACTTGAGC-AGGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCTGTT-CAGGCCAGCATCAGTTTGG-TTCGGGGGATAAAGGCTTCGGGAATGTAGCTCCCTC--GGGAGTGTTATAGACCGTT-GCGTAATACCCTGATCCGGA Bionectria_sesquicillii_AF210666_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG-CCCCA--GGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGTCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGAC-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTATGACCAGACTTGGGC-AGGTTGATCATCCGTCGTTCTCGGCGGTGCACTCTGCCTGCC-CAGGCCAGCATCAGTTCGC-TCCGGGGGACAAAGGCTTCGGGAATGTGGCTCCCTC--GGGAGTGTTATAGACCGTT-GCGTAATACCCTGGGGCGGA Bionectria_setosa_AF210670_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG--CGCA--AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGAAGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGA-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGTTTATGACCAGACTTGGGC-AGGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCTGCC-CAGGCCAGCATCAGTTCGC-TTCGGGGGATAAAGGCTTTGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCATT-GTGTAATACCCTGAAGCGGA Bionectria_grammicospora_AF210678_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG--CGCA--AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGA-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTCATGACCAGACTTGGGC-GGGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCCGCC-CAGGCCAGCATCAGTTCGC-CCCGGGGGAAAAAGGCTTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCGCT-GCGTAATACCCTGGGGCGGA Bionectria_epichloe_DQ363259_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG--CGCA--AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGAAGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGA-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTTATGACCAGACTTGGGC-AGGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCTGCC-CAGGCCAGCATCAGTTCGC-CTTGGGGGATAAAGGTTTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCGTT-GCGTAATACCCTGGGGCGGA Bionectria_ochroleuca_AY489716_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG--CGCA--AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGA-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTCATGACCAGACTTGGGC-AGGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCTGCC-CAGGCCAGCATCAGTTCGC-CCCGGGGGATAAAGGTTTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCGTT-GCGTAATACCCTGGGACGGA Bionectria_ralfsii_AF210676_ AGTGAAGCGGCAACA-GCTCAAATTTGAAATCTGG--CGCA--AGCCCGAGTTGTAATTTGTAGAGGATGTTTCTGGCGACGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACGGTTGGA-TGCCTAGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATGGGAGGTATACGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGTTTATGACCAGACTTGGGC-AGGTTGATCATCCGTGGTTCTCCGCGGTGCACTCTGCCTGCC-CAGGCCAGCATCAGTTCGC-CCCGGGGGATAAAGGTTTCGGGAATGTGGCTCC-TCC-GGGAGTGTTATAGCCCGTT-GCGTAATACCCTGAGGTGGA ; END; BEGIN TREES; Title HypocrealesMB; LINK Taxa = Taxa; TRANSLATE 1 Hypomyces_armeniacus_AF160239_, 2 Hypomyces_odoratus_AF160240_, 3 Nectria_haematococca_AY489729_, 4 Pseudonectria_rousseliana_PRU17416_, 5 Lecanicillium_lecanii_EF464573_, 6 Nectria_cinnabarina_HM484756_, 7 Nectria_atrofusca_AF178392_, 8 Nectria_radicicola_NRU88132_, 9 Neocosmospora_endophytica_NEU17411_, 10 Mycoarachis_inversa_GQ505991_, 11 F481, 12 Nectria_lamyi_HM484569_, 13 Nectria_coryli_HM484566_, 14 Nectria_pyrrhochlora_HM484570_, 15 Nectria_zanthoxyli_HM484571_, 16 Nectria_austroamericana_GQ505988_, 17 Nectria_aurigera_HM484573_, 18 Melanospora_fallax_MFU17404_, 19 Nectria_cosmariospora_NCU17407_, 20 F528, 21 Nectriopsis_squamulosa_NSU17423_, 22 Nectriopsis_sporangiicola_AF210662_, 23 Nectria_zonata_NZU17424_, 24 Roumegueriella_rufula_GQ505999_, 25 Nectria_arenula_NAU88121_, 26 Bionectria_pityrodes_AF210672_, 27 Bionectria_coronata_AF210667_, 28 Bionectria_rossmaniae_AF210665_, 29 Bionectria_sesquicillii_AF210666_, 30 Bionectria_setosa_AF210670_, 31 Bionectria_grammicospora_AF210678_, 32 Bionectria_epichloe_DQ363259_, 33 Bionectria_ochroleuca_AY489716_, 34 Bionectria_ralfsii_AF210676_; TREE con_50_majrule = (1:0.017714,2:0.012856,((((3:0.255135,6:0.119469,7:0.076362,8:0.0463,9:0.072714)0.57:0.044719,4:0.102519)0.51:0.043344,(((10:0.072151,((22:0.1705,(((((26:0.106264,30:0.00846)0.90:0.034716,((31:0.032872,33:0.011569)0.61:0.012396,32:0.017709,34:0.013561)0.77:0.02404)0.79:0.025591,28:0.058759)0.91:0.031554,27:0.063662)0.74:0.028214,29:0.016965)0.93:0.060491)0.64:0.050633,((23:0.188339,25:0.0613)0.56:0.024302,24:0.043067)0.93:0.050922)1.00:0.108052)1.00:0.082777,20:0.072241)0.60:0.029277,21:0.041351)0.98:0.056325,((11:0.118562,12:0.066996)0.83:0.033165,(14:0.010468,15:0.010675)0.59:0.024755)0.88:0.028474,13:0.037182,(16:0.057146,17:0.02382)0.96:0.052356,(18:0.046099,19:0.087557)0.80:0.033384)0.93:0.086458,5:0.082875)1.00:0.220144); TREE con_50_majrule = (1:0.017714,2:0.012856,((((3:0.255135,6:0.119469,7:0.076362,8:0.0463,9:0.072714):0.044719,4:0.102519):0.043344,(((10:0.072151,((22:0.1705,(((((26:0.106264,30:0.00846):0.034716,((31:0.032872,33:0.011569):0.012396,32:0.017709,34:0.013561):0.02404):0.025591,28:0.058759):0.031554,27:0.063662):0.028214,29:0.016965):0.060491):0.050633,((23:0.188339,25:0.0613):0.024302,24:0.043067):0.050922):0.108052):0.082777,20:0.072241):0.029277,21:0.041351):0.056325,((11:0.118562,12:0.066996):0.033165,(14:0.010468,15:0.010675):0.024755):0.028474,13:0.037182,(16:0.057146,17:0.02382):0.052356,(18:0.046099,19:0.087557):0.033384):0.086458,5:0.082875):0.220144); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 491; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 491; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 491; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374683224306; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1702301847133026754; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1603912246300945596; mqVersion 275; checksumv 0 3 1403735919 null getNumChars 491 numChars 491 getNumTaxa 34 numTaxa 34 short true bits 15 states 15 sumSquaresStatesOnly 340602.0 sumSquares 340602.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 86; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 720 703; setLocation 7 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1702301847133026754 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1702301847133026754; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 634 636; setLocation 7 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1702301847133026754 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 822.1311184768094.4137352768864162519; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 634 636; setLocation 7 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setTree '(2:0.006428,(1:0.017714,(5:0.082875,(13:0.037182,(16:0.057146,17:0.02382):0.052356,(18:0.046099,19:0.087557):0.033384,((11:0.118562,12:0.066996):0.033165,(14:0.010468,15:0.010675):0.024755):0.028474,(4:0.102519,(3:0.255135,6:0.119469,7:0.076362,8:0.0463,9:0.072714):0.044719):0.043344,(21:0.041351,(20:0.072241,(10:0.072151,((24:0.043067,(23:0.188339,25:0.0613):0.024302):0.050922,(22:0.1705,(29:0.016965,(27:0.063662,(28:0.058759,((26:0.106264,30:0.00846):0.034716,(32:0.017709,34:0.013561,(31:0.032872,33:0.011569):0.012396):0.02404):0.025591):0.031554):0.028214):0.060491):0.050633):0.108052):0.082777):0.029277):0.056325):0.086458):0.220144):0.006428);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1603912246300945596 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 634 636; setLocation 7 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;