#NEXUS [written Wed Jul 24 16:27:19 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS Ceriosporopsis_tubulifera_HQ111028_ Marinospora_calyptrata_HQ111036_ Nautosphaeria_cristaminuta_HQ111009_ Haligena_elaterophora_AY864846_ F537 Remispora_galerita_HQ111015_ Lanspora_coronata_LCU46889_ F560 F516 F175 F448 F535 F321 F545 F498 ; END; BEGIN CHARACTERS; TITLE HalosphaeriaceaeMB; DIMENSIONS NCHAR=545; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Ceriosporopsis_tubulifera_HQ111028_ ----------------------------------AAGCGGCAACAGCTCAA-ATTTGAAAT-CTGGCCCC--TCCGGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGA-GGAGCCTTCCAAGTCCCCTGGAATGGGGCGCCATAGAGGGTGAGAGCCCCGTAT-GGTTGGATTCCG-AGCCTCTGTAAAGCTCCTTCAACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAA-TGGGAGGTAAACCCCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGTGCCTGGCAGCTCAGCCGTCC-TTATGGGC-GGTGCACTCTGCC-GGCTCAGGCCAGCATCAGTTC--GCGGTCGGGGAGAAAAGCGGGGGGAACGTAGCTCTTC--GGAGTGTTATA-GCCCTCCG-T-A-ATACCCTTTCCGC-GGACTGAGGTTCGCGC Marinospora_calyptrata_HQ111036_ ----------------------TAACGGCGAGTGAAGCGGCAACAGCTCAA-ATTTGAAAT-CTGGCCTCCTTGCGGGGTCCGAGTTGTAATTTGCAGAGGATGCTTTTGGCGA-GGAGCCTTCCAAGTTCCCTAGAATGGGACGCCATAGAGGGTGAGAGCCCCGTAC-GGTTGGATTCCG-AGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAA-TGGGAGGTAAACCCCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGTGACCAGACTTGCGCCTGGCAGCTCAGCCGTCCCTCCGGGGC-GGTGCACTCTGCC-GGCTCAGGCCAGCATCAGTTC--GCGGTCGGGGAGAAAAGCGGCGGGAACGTGGCTCTTC--GGAGTGTTATA-GCCCGCTGC--A-ATA-CCCTTCCGC-GGACTGAGGTTCGCGC Nautosphaeria_cristaminuta_HQ111009_ -------------TTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CCGGCCCC--A----GGCCCGAGTTGTAACCTGCAGAGGATGCTTCTGGCGA-GGCGCCTTCCGAGTGCCCTGGAACGGGACGCCGCAGAGGGTGAGAGCCCCGTAC-GGTCGGTCGCCG-AGCCTGTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAA-CGGGAGGTATACCCCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGCACGTGAAATTGTTGAGAGGGAAGCGCTTGTGACCAGACTCGGGCCCGGCGGTTCAGCT-GGCGTTCTCGCC-AGCGCACTCCGCC-GGCCCAGGCCAGCATCGGTTC--GCCGCCGGGGAGAAGGGCGGGGGGAATGTGGCTCCTC--GGAGTGTTATA-GCCCCCCGCC--G-TG-CCCTCCGGC-GGACCGAGGTACGCGC Haligena_elaterophora_AY864846_ ---CCAAC-GGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAA-ATTTGAAAT-CTGGCTCCC-AGC-GGGTCCGAGTTGTAATTTGCAGAGGATGCTTCAGGC-AGAGCGCCTTCCGAGTTCCCTGGAACGGGACGCCGCAGAGGGTGAGAGCCCCGTAC-GGTAGGTGGCCG-AGCCGCTGTGAAGCTCCCTCGAAGAGTCGAGTAGTTTGGGAATGCTGCTCTAA-GCGGGAGGTATACCTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTCATGACCAGACCTGAGCCTGGTAAATCAGCC-TCCGTTCTCGGT-GGTGCACTTTGCC-GGCCCAGGCCAGCATCGGT-C-TGCCCTCGGGGAGAAGAACAGTGGGAACGTGGCTCCCT--GGAGTGTTATA-GCCCTCTG-T-AGATG-CCCGTCGGT-GGACCGAGGTCCGCGC F537 AAACCAACAGGAAGTGCCCCTGTAACGGCGGGGGCAGCGGCAACAGATCAGAATTTGTAATCCTGGCCCCC---C-GGGCSCGAGTGGTAATGGTTAGAGGATGTTTCTGGCGA-GGAGCCGTCCGAGTTCCGCGGAACGGGACGCCGGAGAGGGTGCGARCCCCGTACAGG-CGGACGCCG-AGCGTATGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGARAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCATCC-GGCGTTCTCGCC-GGTGCACTCCGCCGGGCTCGGGCCAGCATCGG--------------------------------------------------------------------------------------------------- Remispora_galerita_HQ111015_ AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAA-ATTTGAAAT-CTGGCCCC--A----GGCCCGAGTTGTAATTTGCAGAGGATGCTTCTGGCGAGGGCGCCGGCCGAGTGCCCTGGAACGGGCCGCCGTAGAGGGTGAGAGCCCCGTAC-GGCCGGACGCCGAAGCCTCTGTG-AGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAA-CGGGAGGTATACCCCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTCGTGACCAGACTTGCGCCCGGTAACTCAGCCCGGCGTTCTCGCCGGGCGCATTTTGCC-GGCTCAGGCCAGCATCAGT-C-TGCCGTCGGGGAGAAGGGCGCTGGGAATGTGGCTCTTC--GGAGTGTTATA-GCCCGGCGCT---ATGCCCCT-CGGC-GGACTGAGGTTCGCGC Lanspora_coronata_LCU46889_ AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CTGGCCCCC-A---GGGCCCGAGTTGTAATCTGTAGAGGATGTTTCTGGCAA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACAGG-CGGACGCCG-AGCCTCTGTGAACCTCCTTCGACGAGTCGAGTAGTTTGGGAATCCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCATCC-GGCGTTCTCGCC-GGTGCACTCCGCCGGGCTCGGGCCAGCATCGGTTC-TGGC-GGGGGGATAAAGGCGGCGGGGATGTGGCTCCCCCGGGAGTGTTATA-GCCCGCCGCTCA-ATG-CCCC-CGCCGGGACCGAGGACCGCGC F560 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CTGGCCCCC-A---GGGCCCGAGTTGTAATCTGTAGAGGATGCTTCTGGCGA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCACAGAGGGTGAGAGCCCCGTACAGG-CGGACGCCG-AGCCGATGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCATCC-GGCGTTCTCGCC-GGTGCACTCCGCCGGGCTCGGGCCAGCATCGGTTCCAGC--GGGGGGATAAAGGCGGCGGGGATGTGGCTCCCCCGGGAGT--TAAAGGCCCGCCGCTCA-ATG-CCCT-CGCCGGGACCGAGGACCGCGC F516 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CTGGCCCCC---C-GGGCCCGAGTTGTAATCTGTAGAGGATGCTTTTGGCAA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACAGG-CGGACGCCG-AGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCATCC-GGCGTTCTCGCC-GGTGCACTCCGCCGGGCTCGGGCCAGCATCGGTTC-TCGC-GGGGGGATAAAAGCGGCGGGGATGTGGCTCCCCCGGGAGTGTTATA-GCCCGCCGCCCA-ATG-CCCC-CGCGGGGACCGAGGACCGCGC F175 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CTGGTCCCC-A---GGGCCCGAGTTGTAATCTGTAGAGGATGCTTCTGGCAA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACAGG-CGGACGCCG-AGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCATCC-GGCGTTCTCGCC-GGTGCACTCCGTCGGGCTCGGGCCAGCATCGGTTC-TAGT-GGGGGGATAAAGGCGGCGGGGATGTGGCTCCCCCGGGAGTGTTATA-GCCCGCCGCTCA-ATG-CCCC-CGCCGGGACCGAGGACCGCGC F448 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CTGGTCCCC-A---GGGCCCGAGTTGTAATCTGTAGAGGATGTTTCTGGCAA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACAGG-CGGACGCCG-AGCCTCTGTGAAACTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGTATCATCC-GGCGTTCTCGCC-GGTGCACTACGCCGGGCTCGGGCCAGCATCGGTTC-TGGC-GGGGGGATAAAGGCGGCGGGGATGTGGCTCCCCCGGGAGTGTTATA-GCCCGCCGCTCA-ATG-CCCT-CGCCGGGACCGAGGACCGCGC F535 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CTGGTCCCC-A---GGGCCCGAGTTGTAATCTGTAGAGGATGCTTTTGGCAA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTACAGG-CGGACGCCG-AGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCATCC-GGCGTTCTCGCC-GGTGCACTCCGCCGGGCTCGGGCCAGCATCGGATC-TCGC-GGGGGGATAAAGGCTTCGGGAATGTGGCTCC----------------------------------------------------------- F321 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATCTGAAAT-CTGGCCCCC-A---GGGCCCGAGTTGTAATCTGTAGAGGATGCTTCTGGCAA-GGCGCCGCCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCAGTACAGG-CGGACGCCG-AGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCACCC-GGCGTTCTCGCC-GGTGCATTGCGCCGGGCTCGGGCCAGCATCGGTTC-TGGC-AGGGGGATAAAGGCGGCGGGGATGTGGCTCCCC--------------------------------------------------------- F545 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CTGGTCCTC-T---GGGCCCGAGTTGTAATCTGTAGAGGATGCTTCTGGCAA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCGGAGAGGGTGAGAGCCCCGTACAGG-CGGACGCCG-AGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTC-AAAGCGGGAGGTAAATTTCTTCTAAAGCTAAATATAGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCTGTGACCAGACTCGCGCCCGGCGGATCATCC-GGCGTTCTCGCC-GGTGCACTCCGCCGGGCTCGGGCCAGCATCGGTT--TCG-------------------------------------------------------------------------------------------- F498 AAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAG-ATTTGAAAT-CCGGCCCCC---C-GGGCCCGAGTTGTAATCTGTA?AGGATGCTTCTGGCGA-GGCGCCGTCCGAGTTCCCTGGAACGGGACGCCGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; Title HalosphaeriaceaeMB; LINK Taxa = Taxa; TRANSLATE 1 Ceriosporopsis_tubulifera_HQ111028_, 2 Marinospora_calyptrata_HQ111036_, 3 Nautosphaeria_cristaminuta_HQ111009_, 4 Haligena_elaterophora_AY864846_, 5 F537, 6 Remispora_galerita_HQ111015_, 7 Lanspora_coronata_LCU46889_, 8 F560, 9 F516, 10 F175, 11 F448, 12 F535, 13 F321, 14 F545, 15 F498; TREE con_50_majrule = (1:0.030188,2:0.014683,(((3:0.044471,((5:0.0704,(7:0.008193,((9:0.006452,12:0.018894)0.99:0.013135,14:0.010705)0.58:0.007835,10:0.008182,11:0.011668,13:0.022971)0.63:0.008572,8:0.016041)0.53:0.018674,15:0.01353)1.00:0.060526)0.98:0.026156,6:0.03051)0.99:0.025898,4:0.084049)1.00:0.067216); TREE con_50_majrule = (1:0.030188,2:0.014683,(((3:0.044471,((5:0.0704,(7:0.008193,((9:0.006452,12:0.018894):0.013135,14:0.010705):0.007835,10:0.008182,11:0.011668,13:0.022971):0.008572,8:0.016041):0.018674,15:0.01353):0.060526):0.026156,6:0.03051):0.025898,4:0.084049):0.067216); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 545; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = gamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 545; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 545; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374683239526; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6667799315436766836; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5761042544021722121; mqVersion 275; checksumv 0 3 3091280269 null getNumChars 545 numChars 545 getNumTaxa 15 numTaxa 15 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 129195.0 sumSquares 68533.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 117; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1217 703; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6667799315436766836 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6667799315436766836; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1100 636; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6667799315436766836 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 865.1306874150156.7977654090569886046; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1100 636; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(4:0.0420245,((1:0.030188,2:0.014683):0.067216,(6:0.03051,(3:0.044471,(15:0.01353,(5:0.0704,8:0.016041,(7:0.008193,10:0.008182,11:0.011668,13:0.022971,(14:0.010705,(9:0.006452,12:0.018894)0.99:0.013135)0.58:0.007835)0.63:0.008572)0.53:0.018674)1.00:0.060526)0.98:0.026156)0.99:0.025898)1.00:0.0420245);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5761042544021722121 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1100 636; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;