#NEXUS [written Wed Jul 24 16:49:43 GMT+00:00 2013 by Mesquite version 2.75 (build 566) at Macintosh-6.local/192.168.5.142] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS Exserohilum_mcginnisii_AF081453_ Ophiosphaerella_agrostis_AF191550_ Phaeosphaeriopsis_glauco_punctata_AF250819_ Phaeosphaeriopsis_obtusispora_AF250822_ Phaeosphaeriopsis_agavensis_AF250823_ Ophiosphaerella_korrae_AF250827_ Drechslera_avenae_AY004796_ Drechslera_catenaria_AY004803_ Drechslera_andersenii_AY004805_ Alternaria_malorum_AY251081_ Alternaria_thalictrigena_EU040211_ Drechslera_erythrospila_EU552124_ Lophiostoma_cynaroidis_EU552138_ Lophiostoma_fuckelii_EU552139_ Lophiostoma_macrostomum_EU552141_ Lophiostoma_chamaecyparidis_EU552143_ Botryosphaeria_cf_protearum_EU552144_ Pyrenochaeta_inflorescentiae_EU552153_ F174 F188 F256 F234 F237 F247 Guignardia_citricarpa_FJ538315_ Bipolaris_zeicola_GQ253957_ ; END; BEGIN CHARACTERS; TITLE PleosporalesMB; DIMENSIONS NCHAR=937; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Exserohilum_mcginnisii_AF081453_ TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTTTG------------CTTGGTGTTGGGC---------GTCTTTTTGTC-TCTCCCC--TTGTT-GGGGGAGACTC----GCCTTAAAACGA-TTGGCAGCC--GACC--TA-CT-GGTTTT-C-GGAG--CGCAGC------ACA-AATTT-GCGTTTTGACCTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ophiosphaerella_agrostis_AF191550_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACCTTCAAGCTCTG------------CTTGGTGTTGGGT---------GTT---TTGTCCTCTC-----CATTG-CGTTTGGACTC----GCCTTAAAGCAA-TTGGCAGCC-AGT-G--TA-TT-GG-TTT--T-AAG--CGCAGC------ACA--TCTT-GCGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phaeosphaeriopsis_glauco_punctata_AF250819_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACCTTCAAGCTATG------------CTTGGTGTTGGGT---------GTT----TGTCCTCT------CATTA-CGTTTGGACTC----GCCTTAAAACAA-TTGGCAGCC-A-TTA--TA-TT-GG-TAT--TGGAG--CGCAGC------ACA-AA-TT-GCATTTTGACCTCGGATCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phaeosphaeriopsis_obtusispora_AF250822_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACCTTCAAGCTCTG------------CTTGGTGTTGGGT---------GTT----TGTCCTCT------CCTTA-TGTTTGGACTC----GCCTTAAAATGA-TTGGCAGCC-A-TTG--TA-TT-GG-TAC--TGGAG--CGCAGC------ACA--ATTT-GCATTTTGACCTCGGATCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phaeosphaeriopsis_agavensis_AF250823_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACCTTCAAGCTATG------------CTTGGTGTTGGGT---------GTT----TGTCCTTTC-----AATTT-GGTTTGGACTT----GCCTTAAAATAA-TTGGCAGCC-AGT-G--TA-TT-GG-ACT--T-GAGA-TGCAGC------ACA-AA-TT-GC-TTTTGACCTCGGATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ophiosphaerella_korrae_AF250827_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACCTTCAAGCTATG------------CTTGGTGTTGGGT---------GTT----TGTCCACTC-----CACTG-CGTCTGGACTC----GCCTTAAAGCAA-TTGGCAGCCTA-TAT-----CT-GG-TTT--T-AAG--CGCAGC------ACA--TTTT-GCGGTTTGACCTCGGATCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Drechslera_avenae_AY004796_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTTTG------------CTTGGTGTTGGGC---------GTT--TTTGTC-T-TGG----GTCCG-CCCCGAGACTC----GCCTTAAAATCA-TTGGCAGCC-GG-CC--TA-CT-GG-TTT-C-GGAG--CGCAGC------ACATTTTTT-GCG-TTTGACCTCGGATCAGGTAGGGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Drechslera_catenaria_AY004803_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTTTG------------CTTGGTGTTGGGC---------GTC--TTTGTG-T-TGGGGGGCTTTACCCCCGATACTC----GCCTTAAAATCA-TTGGCAGCC-GG-CC--TA-CT-GG-TTC-C-GGAG--CGCAGC------ACATTTTTT-GCG-TTTGACCTCGGATCAGGTAGGGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Drechslera_andersenii_AY004805_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTTTG------------CTTGGTGTTGGGC---------GTC---TTGTC-T-TGGGGG-CTTCC-TCTCAAGACTC----GCCTTAAAATCA-TTGGCAGCC-GG-CC--TA-CT-GG-TTT-C-GGAG--CGCAGC------ACATTATTT-GCGTTTTGACCTCGGATCAGGTAGGGATACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Alternaria_malorum_AY251081_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTTTG------------CTTGGTGTTGGGC---------GTC-TTTTGTC-TC-C-----AGCTT-GCTGGAGACTC----GCCTTAAAGTCA-TTGGCAGCC-GG-CC--TA-CT-GG-TTT-C-GGAG--CGCAGC------ACA--AGTC-GCG-TTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTTTT-----AGAGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGCTTTGGCAGCGGTCCAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTGCAGTTGCTCATCCGGG-CTTTT-GCCCGGTGCACTCTTCTGCAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCTCTGTCACGTACCTCTCTTCGGGGAGGCCTTATAGGGG-AGACGACATACTACCAGCCTGGACTGAGGTCCGCGC Alternaria_thalictrigena_EU040211_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACTCTCAAGCTCTG------------CTTGGTGTTGGGC---------GTC---TTGTC-T-TCA----GTCTT-GCTGGAGACTC----GCCTTAAAGTCA-TTGGCAGCC-GG-CC--TA-CT-GG-TTT-C-GGAG--CGCAGC------ACA--AGTC-GCGTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTTTT-----AGAGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGCTTTGGCAGCGGTCCAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGTCGCTGGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTACATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTGCAGTTGCTCATCCGGG-CTTTT-GCCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTAGGATAAAGGTCTCTGTCACGTACCTCTCTTCGGGGAGGCCTTATAGGGG-AGACGACATACTACCAGCCTGGACTGAGGTCCGCGC Drechslera_erythrospila_EU552124_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTTTG------------CTTGGTGTTGGGC---------GTT--TTTGTC-TC-GG----GTCCG-CCCCGAGACTC----GCCTTAAAATCA-TTGGCAGCC-GG-CC--TA-CT-GG-TTT-C-GGAG--CGCAGC------ACA-TTTTT-GCG-TTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTTT-----CAGGGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGCTTTGGCAGCGGTCCAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGTCGCTAGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTGCAGTTGCTCATCCGGA-CTTTT-GTCCGGTGCACTCTTCTGCAGGCAGGCCAGCATCAGTTTGGGCGGTGGGATAAAGGTCTCTGTCACGTACCTCTCTTCGGGGAGGCCTTATAGGGG-AGACGACATACCACCAGCCTGGACTGAGGTCCGCGC Lophiostoma_cynaroidis_EU552138_ TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATCTAACCCCCTCAAGCACTG------------CTTGGTGTTGGGC---------GCT---TTGTCCCGC------CT-CG-GGCGCGGACTC----GCCTTAAAAGCA-TTGGCGGCC-TGT-G--TA-TT-GG-CTT-C--GAG--CGCAGC------AGA---CTC-GCG--TTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCTCT-----CAGGGTCCGAGTTGTAATTTGTAGAGGGCGCTTTGGCGTCGGCCACGGCCTAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAACCCCGTACGTGGCCGCTGGCCTTCGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCCTGTAGTTGCTCACCCGAGCCACCG-GCTCGGTGCACTCTTCTGCGGGCAGGCCAGCATCAGTCCGGGCGGTCGGATAAAGGCCTCGGGAATGTAGCTCCCCTCGGGGAGTG-TTATAGCCCGGGGTGCCATGCGACCAGCCTGGACTGAGGTCCGCGC Lophiostoma_fuckelii_EU552139_ TTAAAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTCA-AAATTCAAGCTCAG------------CTTGGTGATGGGC---------GTC----TGTCCCGC------CTCCG-CGCGCGGACTC----GCCTCAAAAGTAGTTGGCAGC----TCCCTTA-TC-GG-CAC--TGAA---CGCAGC------AAA---TTT-GCG--TTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCCC--CCACGGGGGTCCGAGTTGTAATTTGCAGAGGGTGCTTTGGCGTTGGCTGTGGTCTAAGTTCCTTGGAACAGGACGTCGCAGAGGGTGAGAATCCCGTATGTGGCCGCCAGTCTTCGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATCTGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGTTAGACGTGCCTCTAGTTGCTCAGCCGGGCCTTCGGGCCCGGTGCACTCTTCTATTGGCAGGCCAGCATCAGTCTGGGCGGTCGGATAAAGGCCCATTAAACGTGACTCCCTCCGGGGAGAGCTTATAGGGT-GGGCGACATGCGATCAGCCCGGACTGAGGTCCGCGC Lophiostoma_macrostomum_EU552141_ TTAAAACTTTCAACAATGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTAC-AAATTCAAGCTCAG------------CTTGGTGATGGGT---------GTC----TGTCCCGC------CTCGG-TGCGTGGACTC----GCCTCAAATGCAGTTGGCAGC--TTTCCCC---TC-GG-CTC--TAAA---CGCAGC------AGA--A-TT-GCG--TTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTTT-----CAGGGTCCGAGTTGTAATTTGTAGAGGGTGCTTTGGCGTTGGTTGTGGTCTAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGCCGCCAGCCTCCGCCGTGTAAAGCCCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTTGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCTAGACGTGCCTTTGGTTGATCAGCCGGA-CTTTT-GCCCGGTGCACTCTTCCTTTGGCAGGCCAGCATCAGTTTGGGCGGCTGGATAAAGGTCTGTTAAACGTGACTTCCTTCGGGGAGAGCTTATAGGGC-AGACGACATGCAGCCAGCCTGAACTGAGGTCCGCGC Lophiostoma_chamaecyparidis_EU552143_ TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATCTGA-CCCCTCAAGCACTG------------CTTGGTGTTGGGC---------GCC----TGTCCCGC------CTCCG-CGCGCGGACTC----GCCTGGAAAGCA-TTGGCGGCC-CG-CG--TA-CC-GG-CCT-C--GAG--CGTAGC------AGA---CTT-GCGTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCC----CCGGGCGCCCGAGTTGTAATTTGCAGAGGGTGCTTTGGCGTTGGCCGCGGCCCAAGTTCCTTGGAACAGGGCGTCGCAGAGGGTGAGAACCCCGTACCTGGCCGCCGGCCTTCGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTCCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCCCGCAGTCGTTC------------------------CACCTCTGCGGGCAGGCCAGCATCAGTCTGGGCGGTCGGACAAAGGCCCCGGGAACGTAGCTCCCTCCGGGGAGTG-TTATAGCCCGGGGCGCCATGCGGCCAGCCCGGACTGAGGTCCGCGC Botryosphaeria_cf_protearum_EU552144_ CTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTATTGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTCA-ACCCTCAAGCTCTG------------CTTGGTATTGGGC----------TC----CGTCCTCT---------------ACGGACGC----GCCTCAAAGACC-TCGGCGGTGGCGTC------TTGC------CTCGAG--CGTAGTAG-AAAACA--CCTC-GC-GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAAGCTGGCCCCCTC-----GGGGTCCGCGTTGTAATTTGTAGAGGATGGTTCGGCGATGGCTCCCGTCTAAGTCCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTATGCGATGGGCTGCCTTAGCCGTGTGAACCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGTCCGCAGTTGCTCAGCCCGT-CTCCT-GACGGGCGTACTCTTCTGCGGCCAGGCCAGCATCAGTTCGGGCGGTCGGATAAAGACCCGGGGAACGTAGCTCCTCTCGGGGAGTG-TTATAGCCCCGGGTGCAATGCGGCCAGCCCGGGCTGAGGATCTCGC Pyrenochaeta_inflorescentiae_EU552153_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAAAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTCTGCTTTTTCAGCATCTTGGTGTTGGGT---------GTT----TGTCCCGC------CCTTG-CGCGTGGACTC----GCCTTAAAGTGA-TTGGCAGCC-GG-----AA-TA-AT-TCTGGGGAA---CGCAGC------ACA--AC-T-GCA-TTTGACCTCGGATCACGGAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCATCAGCTCAAATTTGAAATCTGGCTCTTT-----CAGGGTCCGAGTTGTAATTTGCAGAGGGAGCTTTCGAGTTGGCAGCGGTCTAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGTCGCAGGCCTTCTCGAGGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCCTGTAGTTGCTCATCCGGG-CTTTT-GCCCGGTGCACTCTTCTATAGGCAGGCCAGCATCAGTTTGGGCGGTTGGATAAAGGTCTCTGTCACGTACCTCCTCTCGGGGAGGCCTTATAGGGG-AGACGACATGCAACCAGCCTGGACTGAGGT------ F174 TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACTCTCAAGCTCTG------------CTTGGTGTTGGGC---------GTG---TTGTC-T-AGC-------TA--CT--AGACTC----GCCTTAAAAGAA-TTGGCAGCC-AGT-G--TA-TT-GG-TCT--T-GAG--CGCAGC------ACA--ACTT-GCA--TTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCCTTTT-----AGGGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGCGTTGGTAGCGGTCCAAGTTCTTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGTCGCCAACCTTCGCTATGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCCTGTAGTTGCTTATCTGGA-CTTTT-GTCCAGTGCACTCTTCTGCGGGCAGGCCAGCATCAGTTTGGGCGGTTGGATAAAGGTCTCTATCACGTACCTCCTTTCGGGGAGGCCTTATAGGGG-AGACGACATGCAACCAGCCTGG-------------- F188 TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATCTAA-CCCCTCAAGCATCG------------CTTGGTGTTGGGC---------GCT----TGTCCCGC------CTCCG-CGCGCGGACTC----GCCTCGAAAACA-TTGGCGGCC-TGT-G--TA-TT-GG-CTT-C--GAG--CGCAGC------ACA---TTT-GCG-TTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCTCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCCCTT----GGGCGCCCGAGTTGTAATTTGCAGAGGGTGCTTTGGCGTTGGCCACGGCCTAAGTTCCTTGGAACAGGGCGTCGCAGAGGGTGAGAACCCCGTACGTGGCCGCTGGCCTTCGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTCCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTCGCTCGCGGTCGTTC------------------------TTCTTCCGCGAGCGGGCCAGCATCAGTCTGGACGGTCGGATAAAGGCCTTGGGAATGTAGCTCTCTTCGGGGAGTG-TTATAGCCCAGGGCGTCATGCGGCCAGTTCGGACTGAGGTCCGCGC F256 TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAAAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACCTTCAAGCTCTG------------CTTGGTGTTGGGT---------GTT----TGTCCCG-------CTTTG-TGCGTGGACTC----GCCTTAAAGCCA-TTGGCAGCC-GG-CG--TA-CT-AG-TCT--GGGAG--CGCAGC------ACA--ATTT-GCGTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCATCAGCTCAAATTTGAAATCTGGCTCTTT-----CAGGGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGCGTTGGCAGCGGTCCAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGTCGCTGGCCTTCGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAATAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCCTGTAGTTGCTCATCCGGG-CTCTT-GCCTGGTGCACTCTTCTGCGGGCAGGCCAGCATCAGTCTGGGCGGTTGGATAAAGGCCTCTGTCATGTACCTCCTCTCGGGGAGGCCTTATAGGGG-AGGCGTAATGCAACCAGCCTGG-------------- F234 TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCCTCAAGCTTTG------------CTTGGTGTTGGGC---------GTCTTTTTGTC-TCTCCCC--TTGTT-GGGGGAGACTC----GCCTTAAAACGA-TTGGCAGCC--GACC--TA-CT-GGTTTT-C-GGAG--CGCAGC------ACA-AATTT-GCGTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- F237 TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGT-ACTCTCAAGCCTTG------------CTTGGTGTTGGGT---------GTT----TGTCCTC-------CCCTC-TGGTTGGACTC----GCCTTAAAAATA-TTGGCAGCC-AGTG---TA-TT-GG-TAT--TGAAG--CGCAGC------ACA--ACTT-GCGGCTTGACCTCGGATCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- F247 TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCTTTTGGTATTCCGAAAGGTATATATGTTTGAACGTCATTTA--AACCTCAAGTTCTA------------CTTGGTCATGAGAATCATCATTGAT-----GTT-CTTCAA---ATGAATTGGCTTGA-TCAATTTAAACTAAACT--TTG-CAATG-TAACAGTTTAAC-TTTGAC-TTGATCGACGC-CG--TTAAAGA--TCACAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Guignardia_citricarpa_FJ538315_ ATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCA-ACCCTCAAGCTCTG------------CTTGGTATTGGGC---------GAC------------------GTCCG-CTGCCGGACGC----GCCTGGAAGACC-TCGGCGACGGCGTC------TC-AGCCT----CGAG--CGTAGTAGTAAAATA--TCT-CGC-GGTTGACCTCGGATCAGGTAGGGATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Bipolaris_zeicola_GQ253957_ TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGT-ACCTTCAAGCTTTG------------CTTGGTGTTGGGC---------GTT--TTTGTC-TCCC-----TCTTT-CTGGGAGACTC----GCCTTAAAACGA-TTGGCAGCC-GG-CC--TA-CT-GG-TTT-C-GGAG--CGCAGC------ACATAATTT-GCGTTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCTCTTT-----CAGAGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGCTTTGGCAGCGGTCCAAGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGTGGTCGCTAGCTATTGCCGTGTAAAGCCCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACTTGCTTGCAGTTGCTCATCCGGG-CTTTT-GCCCGGTGCACTCTTCTGTAGGCAGGCCAGCATCAGTTTGGGCGGTGGGATAAAGGTCTCTGTCACGTACCTCTCTTCGGGGAGGCCTTATAGGGG-AGACGACATACCACCAGCCTAGACTGAGGTCCGC-- ; END; BEGIN TREES; Title PleosporalesMB; LINK Taxa = Taxa; TRANSLATE 1 Exserohilum_mcginnisii_AF081453_, 2 Ophiosphaerella_agrostis_AF191550_, 3 Phaeosphaeriopsis_glauco_punctata_AF250819_, 4 Phaeosphaeriopsis_obtusispora_AF250822_, 5 Phaeosphaeriopsis_agavensis_AF250823_, 6 Ophiosphaerella_korrae_AF250827_, 7 Drechslera_avenae_AY004796_, 8 Drechslera_catenaria_AY004803_, 9 Drechslera_andersenii_AY004805_, 10 Alternaria_malorum_AY251081_, 11 Alternaria_thalictrigena_EU040211_, 12 Drechslera_erythrospila_EU552124_, 13 Lophiostoma_cynaroidis_EU552138_, 14 Lophiostoma_fuckelii_EU552139_, 15 Lophiostoma_macrostomum_EU552141_, 16 Lophiostoma_chamaecyparidis_EU552143_, 17 Botryosphaeria_cf_protearum_EU552144_, 18 Pyrenochaeta_inflorescentiae_EU552153_, 19 F174, 20 F188, 21 F256, 22 F234, 23 F237, 24 F247, 25 Guignardia_citricarpa_FJ538315_, 26 Bipolaris_zeicola_GQ253957_; TREE con_50_majrule = (1:0.003328,22:0.00336,(((((((2:0.006194,6:0.035956)0.96:0.024268,3:0.010724,4:0.017109,5:0.040648,23:0.069502)0.51:0.022402,19:0.028448)0.91:0.01982,(((13:0.020703,(16:0.030423,20:0.03689)1.00:0.031944)0.97:0.025618,(17:0.024701,25:0.082976)0.99:0.185404)0.91:0.026621,((14:0.038556,15:0.044362)0.68:0.042299,24:0.819606)0.66:0.045827)0.79:0.052702,(18:0.042021,21:0.015726)1.00:0.016848)0.84:0.039673,(((7:0.003402,12:0.001654)0.92:0.006669,8:0.021567)0.58:0.004817,9:0.017829)0.85:0.009361)0.83:0.00981,(10:0.004693,11:0.00648)0.99:0.016449)0.91:0.010648,26:0.007851)0.98:0.028528); TREE con_50_majrule = (1:0.003328,22:0.00336,(((((((2:0.006194,6:0.035956):0.024268,3:0.010724,4:0.017109,5:0.040648,23:0.069502):0.022402,19:0.028448):0.01982,(((13:0.020703,(16:0.030423,20:0.03689):0.031944):0.025618,(17:0.024701,25:0.082976):0.185404):0.026621,((14:0.038556,15:0.044362):0.042299,24:0.819606):0.045827):0.052702,(18:0.042021,21:0.015726):0.016848):0.039673,(((7:0.003402,12:0.001654):0.006669,8:0.021567):0.004817,9:0.017829):0.009361):0.00981,(10:0.004693,11:0.00648):0.016449):0.010648,26:0.007851):0.028528); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 937; END; begin mrbayes; set autoclose = no nowarn = yes; lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 937; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 937; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1374684584063; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8731203832512910480; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 23 20 21 22 24 25; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1879475087477532866; mqVersion 275; checksumv 0 3 7531396 null getNumChars 937 numChars 937 getNumTaxa 26 numTaxa 26 short true bits 15 states 15 sumSquaresStatesOnly 327240.0 sumSquares 327240.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 117; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1042 649; setLocation 119 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8731203832512910480 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8731203832512910480; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 925 582; setLocation 119 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8731203832512910480 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 865.1306351531437.6167977381449440682; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 925 582; setLocation 119 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((17:0.024701,25:0.082976)0.99:0.092702,((13:0.020703,(16:0.030423,20:0.03689)1.00:0.031944)0.97:0.025618,((24:0.819606,(14:0.038556,15:0.044362)0.68:0.042299)0.66:0.045827,((18:0.042021,21:0.015726)1.00:0.016848,(19:0.028448,(3:0.010724,4:0.017109,5:0.040648,23:0.069502,(2:0.006194,6:0.035956)0.96:0.024268)0.51:0.022402)0.91:0.01982,((9:0.017829,(8:0.021567,(7:0.003402,12:0.001654)0.92:0.006669)0.58:0.004817)0.85:0.009361,((10:0.004693,11:0.00648)0.99:0.016449,(26:0.007851,(1:0.003328,22:0.00336):0.028528)0.98:0.010648)0.91:0.00981)0.83:0.039673)0.84:0.052702)0.79:0.026621)0.91:0.092702);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1879475087477532866 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 215; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 925 582; setLocation 119 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;