#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=21; TAXLABELS Thaparocleidus_citreum Thaparocleidus_alatus_1 Thaparocleidus_alatus_2 Thaparocleidus_caecus_1 Thaparocleidus_caecus_2 Thaparocleidus_sinespinae Thaparocleidus_rukyanii_1 Thaparocleidus_rukyanii_2 Thaparocleidus_durandi_1 Thaparocleidus_durandi_2 Thaparocleidus_siamensis Thaparocleidus_komarudini Thaparocleidus_levangi Thaparocleidus_combesi Thaparocleidus_crassipenis Thaparocleidus_turbinatio Thaparocleidus_legendrei Thaparocleidus_lebrunae Thaparocleidus_summagracilis_2 Thaparocleidus_summagracilis_1 Thaparocleidus_tacitus ; END; BEGIN CHARACTERS; TITLE Thaparocleidus_18S_ITS1; DIMENSIONS NCHAR=666; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Thaparocleidus_citreum TCTTAGAGGGACTGGCGCTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_alatus_1 TCTTAGAGGGACTGGCGCTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_alatus_2 TCTTAGAGGGACTGGCGCTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_caecus_1 TCTTAGAGGGACTGGCGCTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_caecus_2 TCTTA-AGGGACTGGCACTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_sinespinae -CTTAGAGGGACTGGCACTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_rukyanii_1 TCTTAGAGGGACTGGCACTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_rukyanii_2 TCTTAGAGGGACTGGCACTTTACATAAAGTGCCGAAGAGGCCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_durandi_1 TCTTA-AGGGACTGGCACTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_durandi_2 TCTTA-AGGGACTGGCACTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_siamensis TCTTAGAGGGACTGGCACTTTAAACAAAGTGCCGAGGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACTAT Thaparocleidus_komarudini TCTTAGGGGGACTGGCATTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_levangi TCTTAGAGGGACTGGCATTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_combesi TCTTAGAGGGACTGGCACTTTACATAAAGTGCCGAAGAAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_crassipenis TCTTAGAGGGACTGGCACTTTACATAAAGTGCCGAAGAAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_turbinatio TCTTAGAGGGACTGGCACTTTACATAAAGTGCCGAGGGAAGCAATAACAGGTCTGTGATGCCCTCAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_legendrei TCTTA-AGGGACTGGCACTTTACATAAAGTGCCGAAGGAAGCAATAACAGGTCTGTGATGCCCT-AATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_lebrunae TCTTAGAGGGACTGGCACTTTACATAAAGTGCCGAAGAAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_summagracilis_2 TCTTA-AGGGACTGGCACTTTACATAAAGTGCCGAGGAAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_summagracilis_1 TCTTA-AGGGACTGGCACTTTACATAAAGTGCCGAGGAAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGTGCTACAATGACGAT Thaparocleidus_tacitus TCTTAGAGGGACTGGCACTTTACATAAAGTGCCGAGGAAAGCAATAACAGGTCTGTGATGCCCTAAATGTCCGGGGCCGCACGCGAGCTACAATGACGAT Thaparocleidus_citreum GCAAATGAGCATGATAAGCTAGTTCGAAAGGATTGGCAAACCTGATCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_alatus_1 GCAAATGAGCATGATAAGCTAGTTCGAAAGGATTGGCAAACCTGATCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_alatus_2 GCAARTGAGCATGATAAGCTAGTTCGAAAGGATTGGCAAACCTGATCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_caecus_1 GCAAATGAGCATGATAAGCTAGTTCGAAAGGATTGGCAAACCTGATCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_caecus_2 GCAAATGAGCATGATTAGCTGGTTCGAAAGGATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_sinespinae GCAAATGAGCATGATTAGCTGGTTCGAAAGGATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_rukyanii_1 GCAAATGAGCATGATTAGCTGGTTCGAAAGGATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_rukyanii_2 GCAAATGAGCATGATTAGCTGGTTCGAAAGGATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_durandi_1 GCAAATGAGCATGATTAGCTGGTTCGAGAGAATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_durandi_2 GCAAATGAGCATGATTAGCTGGTTCGAGAGAATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_siamensis GCTAGTGAGCATGATTAGCTGGTCCGAAAGGATTGGCAAACCTGTTCAATCATAGTCGTTACTGGGATTAGGGTTTGTAATTATACCCTATGAACGAGGA Thaparocleidus_komarudini GCAAGTGAGCATGATTAGCTGGTTCGAAAGGATTGGCAAACCTGTTTAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_levangi GCAAGTGAGCATGATTAGCTGGTTCGAAAGGATTGGCAAACCTGTTTAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_combesi GCAAATGAGCATGATTAGCTGGTACGAAAGCATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTGTCCCCCATGAACGAGGA Thaparocleidus_crassipenis GCAAATGAGCATGATTAGCTGGTACGAAAGCATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTGTCCCCCATGAACGAGGA Thaparocleidus_turbinatio GCAAGTGAGCATGATTTGCTGGTTCGAAAGGATTGGCAAACCTGTTTAATCATCGTCATTACTGGGATTGGGGTTTGTAACTATCCCCCATGAACGAGGA Thaparocleidus_legendrei GCAAATGAGCATGATTAGCTGGTTCGAGAGGATTGGCAAACCTGTTCAATCATCGTCGTGACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_lebrunae GCAAATGAGCATGATTAGCTGGTCCGAAAGGTTCGGCAAACCTGTTCAATCATCGTCGTTACTGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_summagracilis_2 GCAAATGAGCATGATTAGCTGGTTCGAAAGAATTGGCAAACCTGTTCAATCATCGTCGTTACTGGGATTGGGGTTTGTAATTGTCCCCCATGAACCAGGA Thaparocleidus_summagracilis_1 GCAAATGAGCATGATTAGCTGGTTCGAAAGAATTGGCAAACCTGTTCAATCATCGTCGTTACTGGGATTGGGGTTTGTAATTGTCCCCCATGAACCAGGA Thaparocleidus_tacitus GCAAGTGAGCATGATTAGCTGGTTCGAAAGGATTGGCAAACCTGTTCAATCATCGTCGTGACCGGGATTGGGGTTTGTAATTATCCCCCATGAACGAGGA Thaparocleidus_citreum ATTCCTAGTAAGCATAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_alatus_1 ATTCCTAGTAAGCATAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_alatus_2 ATTCCTAGTAAGCACAAGTCATAA-CTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCRAGGTTA Thaparocleidus_caecus_1 ATTCCTAGTAAGCATAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_caecus_2 ATTCCTAGTAAGCACAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_sinespinae ATTCCTAGTAAGCACAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_rukyanii_1 ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_rukyanii_2 ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_durandi_1 ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_durandi_2 ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_siamensis ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_komarudini ATTCCTAGTAAGCACAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_levangi ATTCCTAGTAAGCACAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_combesi ATTCCTAGTAAGCACAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCGAGGTTA Thaparocleidus_crassipenis ATTCCTAGTAAGCACAAGTCATAAACTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCGAGGTTA Thaparocleidus_turbinatio ATTCCTAGTAAGCGCAAGTCATTAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_legendrei ATTCCTAGTAAGCGCAAGTCATTAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_lebrunae ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_summagracilis_2 ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_summagracilis_1 ATTCCTAGTAAGCGCAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_tacitus ATTCCTAGTAAGCACAAGTCATAAGCTTGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGTTTAGCAAGGTTA Thaparocleidus_citreum TTGGATTGGCTTTCAGCAGTTCGCACTGCTATAAGCTGGGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_alatus_1 TTGGATTGGCTTTCAGCAGTTCGCACTGCTATAAGCTGGGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_alatus_2 TTGGATYGGCTTTYAGCAGTTCGCRCTGCTATWAGCTGRGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_caecus_1 TTGGATTGGCTTTCAGCAGTTCGCACTGCTATAAGCTGGGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_caecus_2 TTGGATCGGCTTTCAGTAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_sinespinae TTGGATCGGCTTTCAGTAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_rukyanii_1 TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_rukyanii_2 TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_durandi_1 TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_durandi_2 TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_siamensis TTGGATTGGCTTTCACGGGTTCACGCTCGTAATAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_komarudini TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_levangi TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_combesi TTGGATTGACTTTCATCAGCTCGCGCTGCTATTAGCTAAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_crassipenis TTGGATTGACTTTCATCAGCTCGCGCTGCTATTAGCTAAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_turbinatio TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_legendrei TTGGATTGGCTTTCAGTAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_lebrunae TTGGATTGGCTTTCAGCAGTTCGCGCTGCTATTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_summagracilis_2 TTGGATCGGCTTTTAGCGGTTCACGCTGCTTTTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_summagracilis_1 TTGGATCGGCTTTTAGCGGTTCACGCTGCTTTTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_tacitus TTGGATTGGCTTTTAGCGGTTTGCGCTGCTTTTAGCTGAGAAGATGACCGAACTTGATCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG Thaparocleidus_citreum AACCTGCGGAAGGATCATTATCTATGTTTATTCCTAAATATTTAGGTCATG-TATATCGTTTTAGAGGTGTCACGCTTCTAGTGATG-TATTCTTG-TCC Thaparocleidus_alatus_1 AACCTGCGGAAGGATCATTATCTATATTTATTCCTAAATATTTAGGTCATG-TATATCGTTTTAGAGGTGTCTCGCTTCTAGTGATG-TATTCTTG-CCC Thaparocleidus_alatus_2 AACCTGCGGAAGGATCATTATCTAT-TTTATTCCTAAATCTCTAGGWCAATGTATATCATTTTAGAGGTGTCATGCTTCTAGTGATG-TAATTTTG-TCC Thaparocleidus_caecus_1 AACCTGCGGAAGGATCATTATCTATATTTATTCCTAAATATTTAGGTCATG-TATATCGTTTTAGAGGTGTCTCGCTTCTAGTGATG-TATTCTTG-CCC Thaparocleidus_caecus_2 AACCTGCGGAAGGATCATTATCTATATTTATTCCTA--TACTAGGGTGAC--TATACCATTTTAGAGGTCTCATGCTTCTAGTGGTA-CGG-CTTA-CCC Thaparocleidus_sinespinae AACCTGCGGAAGGATCATTATCTATATTTATTCCTA--TACTAGGGTGAC--TATACCATTTTAGAGGTCTCATGCTTCTAGTGGTA-TGG-CTTA-CCC Thaparocleidus_rukyanii_1 AACCTGCGGAAGGATCATTATCTAT-TATTTTTCCAAAACCCAAGGGCAATGTATATCATTTTAGAGGTGTAATGCTTCTAGTGGTG-TAATGTTG-TTC Thaparocleidus_rukyanii_2 AACCTGCGGAAGGATCATTATCTAT-TATTTTTCCAAAACCCAAGGGCAATGTATATCATTTTAGAGGTGTAATGCTTCTAGTGGTG-TAATGTTG-TTC Thaparocleidus_durandi_1 AACCTGCGGAAGGATCATTATCTAT-TATATTTCCAAACCCCA-GGACAATGTGTGTCATTTTAGAGGTGTCATGCTTCTAGTGACA-TAACGTTG-TCC Thaparocleidus_durandi_2 AACCTGCGGAAGGATCATTATCTAT-TATATTTCCAAACCCCA-GGACAATGTGTGTCATTTTAGAGGTGTCATGCTTCTAGTGACA-TAACGTTG-TCC Thaparocleidus_siamensis AACCTGCGGAAGGATCATTATCTGT-TATATTCCTGAAATGTAGGATAAGT-ACTATCGCCTGACGGGC-TCACGGGCCTGAGGGTGATGGTTCTG-TCC Thaparocleidus_komarudini AACCTGCGGAAGGATCATTATCTATATTTATTCCTA--CTCTAGGGTGGC--TTTATCATTTTAGAGGCCTCGTGCTACTAGTGGTT-TGG-CTTG-CCC Thaparocleidus_levangi AACCTGCGGAAGGATCATTATCTATATTTATTCCTA--CTCTAGGGTGGC--TTTATCATTTTAGAGGCCTCGTGCTACTAGTGGTT-TGG-CTTG-CCC Thaparocleidus_combesi AACCTGCGGAAGGATCATTATCTTTATATATTCCATTCACTCTATGTCATT-TACACAGATCTTGAGGTTTCATGCTTCTACTGGTG-TA--TTTG-TCC Thaparocleidus_crassipenis AACCTGCGGAAGGATCATTATCTTTATATATTCCATTCACTCTATGTCATT-TACACAGATCTTGAGGTTTCATGCTTCTACTGGTG-TA--TTTG-TCC Thaparocleidus_turbinatio AACCTGCGGAAGGATCATTATCTAT-TATTATTCC-AATTTCCAGGACAATGTATATCATTTTAGAGGTGTAATGCTTCTAGTGGTG-TAATTTTG-TCC Thaparocleidus_legendrei AACCTGCGGAAGGATCATTATCAAT-TATTATTCCTAAATTCCAGGACGGACTATATCATTTTAGAGGTGTAATGCTTCTAGTGGTG-TGGCTTTG-TTC Thaparocleidus_lebrunae AACCTGCGGAAGGATCATTATCTAT-TATTCTTCCAAATTTAAAGGATGATATGCATCATTTAAGAGGTGTCATGCTTCTTGTGATG-TAATATTG-TCC Thaparocleidus_summagracilis_2 AACCTGCGGAAGGATCATTATCTATATGTATTCCTATACTCTTTGATCAGGGTGTGCCATTTTAGAGGTGTGATGCTTCTAGTGGTTCTG-CCTAGGTCA Thaparocleidus_summagracilis_1 AACCTGCGGAAGGATCATTATCTATATGTATTCCTATACTCTTTGATCAGGGTGTGCCATTTTAGAGGTGTGATGCTTCTAGTGGTTCTG-CCTAGGTCA Thaparocleidus_tacitus AACCTGCGGAAGGATCATTATCTATTTTTATTCCTAAACTCTTTGATTGCGGCCTATCATTTTAGAGGTGTAATGCTTCTAGTG-CTATG-CTTCGATCA Thaparocleidus_citreum TATGCGTTTTTCATACT-CTTGGTT-GGGTAT-GACGCTCTGTTGCAGTATGTT-GGTTGTAATGAGT-CGTCTTAGTGTCTTGTGTGACCAAGTGACAG Thaparocleidus_alatus_1 TATGCGTTTTTCATACT-CTTGGTT-GGGTAT-GACGCTCTGTTGCAGTATGTT-GGTTGTTATGAGT-CGTCTTAGTGTCTTGTGTGACCAAGTGACAG Thaparocleidus_alatus_2 TATGCGTATTTCATGCT-CTTGTTT-GGGCAT-GACGCTCTGTTGCAGTGTGTT-GGCTGTTATGAGT-CGACTGGGTGCTTTATGTGGCCAAGTGACAG Thaparocleidus_caecus_1 TATGCGTTTTTCATACT-CTTGGTT-GGGTAT-GACGCTCTGTTGCAGTATGTT-GGTTGTTATGAGT-CGTCTTAGTGTCTTGTGTGACCAAGTGACAG Thaparocleidus_caecus_2 TTCGCGTTAT-CATGCT-CTTGATTCGGGTAT-GACGCT-TGCTGCAGTTTGTT-GGCTGGTATGAGT-CGTCTTAATGTATGGTGTGGCCGAGTGACAG Thaparocleidus_sinespinae TTCGCGTTAT-CATGCT-CTTGATTCGGGTAT-GACGCTATGCTGCAGTTTGTT-GGCTGGTATGAGT-CGTCTTAATGTATGGTGTGGCCAAGTGACAG Thaparocleidus_rukyanii_1 TTCGCGATC---ATGCT-CTCGTTT-GGGCAT-GACGCTATGTTGCAGTTTGTT-GGTTGTTATGAGT-CGACCGGGTGCTTTATGTGGCCAAGTGACAG Thaparocleidus_rukyanii_2 TTCGCGATC---ATGCT-CTCGTTT-GGGCAT-GACGCTATGTTGCAGTTTGTT-GGTTGTTATGAGT-CGACCGGGTGCTTTATGTGGCCAAGTGACAG Thaparocleidus_durandi_1 TTCGCGACC---ATGCT-CTCGTTT-GGGCAT-GGCGTTCTGTTGCAGTTTGTT-GGCTGGTATGAGT-CGACTGAATGCTTTATGTGACCAAGTGACAG Thaparocleidus_durandi_2 TTCGCGACC---ATGCT-CTCGTTT-GGGCAT-GGCGCTCTGTTGCAGTTTGTT-GGCTGGTATGAGT-CGACTGAATGCTTTATGTGACCAAGTGACAG Thaparocleidus_siamensis TACGAGTCTACCATGCA-TTTGATC-TGGTAT-GACTCTCTATTGCAATGTTGT-GGCTGGCATGAGT-CGAG-GACTGCTTATTGTGACCAAGTGACAG Thaparocleidus_komarudini TTTGCGT-ATTCATGCT-CTTGAT-CGGGCAT-GACGCTACGTTGCAGTTTGTT-GGCTGGTATGAGT-CGCCTTGATGTATGGTGTGGCCAAGTGACAG Thaparocleidus_levangi TTTGCGT-ATTCATGCT-CTTGAT-CGGGCAT-GACGCTACGTTGCAGTTTGTT-G-CTGGTATGAGT-CGCCTTGATGTATGGTGTGGCCAAGTGACAG Thaparocleidus_combesi TATGCGCTCCTCATGCT-CTCCGTTTGGGCGT-GACGCTTTGTTGCAGAATGTT-GGCTGATATGAGT-CGTCTGGTTGTTCTATATAGCCAAGTGGCAG Thaparocleidus_crassipenis TATGCGCTCCTCATGCT-CTCCGTTTGGGCGT-GACGCTTTGTTGCAGAATGTTTGGCTTGAATAATTGCGTCTGGTTGTTCTATATAGCCAAGTGGCAG Thaparocleidus_turbinatio TCTGCGTTCATCATGCT-CTTGTTT-GGGCAT-GACGCTCTGTTGCAGTTTGTT-GGCTGTTATGAGT-CGACTGGATGCTATATGTGACCAAGTGACAG Thaparocleidus_legendrei TCCGCGATTATCATGCT-CTTGTTC-GGGCGT-GACGCTCTGTTGCAGTTTGTT-GGCTGTTATGAGT-CGTCTGGATGCTTTGTGTGACCAAGTGACAG Thaparocleidus_lebrunae TTTGCGATTTC-ATGCT-CTTGTTT-GGGCAT-GACGCTCTGTTGCAGTTTGTT-GGCTGTTATGAGT-CGACTGGATGCTTTATGTGGCCAAGTGACAG Thaparocleidus_summagracilis_2 TTTGCGCCTG--GTACT-CTCCAATTGGGTACCGGGGCTATGTTACAGTCCGTT-GGCTGAGATGAGTC-GACTGAGTGCGTGTCGTGGCCAAGTGACAG Thaparocleidus_summagracilis_1 TTTGCGCCTG--GTACT-CTCCAATTGGGTAC-GGGGCTATGTTACAGTCCGTT-GGCTGAGATGAGTC-GACTGAGTGCGTGTCGTGGCCAAGTGACAG Thaparocleidus_tacitus TTCGCGCCTG--ATACTTCCCCAATTGGGTATCGGGGCTACGTTACAGTCTGTTTGGCTGAGATAGATGGGACTGAGTGCGTGCCGTGGCCAAGTGACAG Thaparocleidus_citreum TGGTT-ACTTA-TTCAAGCATTC-AGGCGTTCCT-ATTTCCTC-TACAGCCGGCTCTGTCACTTAA Thaparocleidus_alatus_1 TGGTT-ACTTA-TTCAAGCATTC-AGGCGTTCCT-ATTTCCTC-TACAGCCAACTCTGTCACTTAA Thaparocleidus_alatus_2 TGGTTGCATTA-TACGGGCATTC-AGGCGTTCCT-ATTCTCTCCTACAGCCAGCTCTGTCACTAAA Thaparocleidus_caecus_1 TGGTT-A-TTA-TT-AAGCATTC-AGGG--TTCT-ATTTCCT--TACAGCCAA-T-TG-CACTTAA Thaparocleidus_caecus_2 TGGTC-GCGCA-TT--AGCATTTGAGACGTTCCC-CATTCCTC-TACGGCCAGCTCTGTCACTATT Thaparocleidus_sinespinae TGGTC-GCGCA-TT--AGCATTTGAGACGTTCCC-CATTCCTC-TACGGCCAGCTCTGTCATTATT Thaparocleidus_rukyanii_1 TGGTTACATTA-CACGGGCATTC-GGGCGTTTTG-TTT-C-TC-TACAGCCAGCTCTGTCACTTCC Thaparocleidus_rukyanii_2 TGGTTACATTA-CACGGGCATTC-GGGCGTTTTG-TTT-C-TC-TACAGCCAGCTCTGTCACTTCC Thaparocleidus_durandi_1 TGGTCCCATTA-CACGGGTATTC-AGACGAATTA-TTTTC-TC-TCCAGTCAGCTCTGTCACTTTT Thaparocleidus_durandi_2 TGGTCCCATTAACACGGGTATTC-AGACGAATTA-TTTTC-TC-TCCAGTCAGCTCTGTCACTTTT Thaparocleidus_siamensis TGGTCGCATCCGTA---ATGTATCAGTGGTCTCTCGTTCCCCTCTGCAGCCATTTCTGTCATTTAC Thaparocleidus_komarudini TGGTC-ATGCA-TT--AGCATC-GAGTCGTTCCC-TGTTCCTC-TACAGTCAGCTCTGTCATTACT Thaparocleidus_levangi TGGTC-ATGCA-TT--AGCATC-GAGTCGTTCCC-TGTTCCTC-TACAGTCAGCTCTGTCATTACT Thaparocleidus_combesi TGGTTACA-TA-TTTAGACATTC-AGATGTTCCC-TATCCCTC-TACAGTCAGCTCTGTCATTGAT Thaparocleidus_crassipenis TGGTTACA-TA-TTTAGACATTC-AGATGTTCCC-TATCCCTC-TACAGTCAGCTCTGTCATTGAT Thaparocleidus_turbinatio TGGTTGCATTA-TATTGGCATTC-GGGCGTTCCC-ATTTTCTC-TACGGCCAGCTCTGTCACTATC Thaparocleidus_legendrei TGGTTGCACTA-TATGGGCATTC-GGGCGTTCCCCAGTTTCTC-TACGGCCAGCTCTGTCATTATT Thaparocleidus_lebrunae TGGTTGCATTA-TGTGGGCATTC-GGTCGTTTGC-ATTTTCTC-TACAGCCAGCTCTGTCATTATA Thaparocleidus_summagracilis_2 TGGTC-CGCGGATT--AGCATTC-GGGCGCTCCCCATTCACTC-TCCAGCCTGCCCTGTCACCTTT Thaparocleidus_summagracilis_1 TGGTC-CGCGGATT--AGCATTC-GGGCGCTCCCCATTC-CTC-TCCAGCCTGCCCTGTCACCTTT Thaparocleidus_tacitus TGGTTTCACGGGATT-AGCATTC-AGGCGCTACCCATTCACTT-TCCAGCCTTCCCTGTCACCAGT ; END; BEGIN TREES; Title MET_Thaparocleidus_18S_ITS1; LINK Taxa = Taxa; TRANSLATE 1 Thaparocleidus_citreum, 2 Thaparocleidus_alatus_1, 3 Thaparocleidus_alatus_2, 4 Thaparocleidus_caecus_1, 5 Thaparocleidus_caecus_2, 6 Thaparocleidus_sinespinae, 7 Thaparocleidus_rukyanii_1, 8 Thaparocleidus_rukyanii_2, 9 Thaparocleidus_durandi_1, 10 Thaparocleidus_durandi_2, 11 Thaparocleidus_siamensis, 12 Thaparocleidus_komarudini, 13 Thaparocleidus_levangi, 14 Thaparocleidus_combesi, 15 Thaparocleidus_crassipenis, 16 Thaparocleidus_turbinatio, 17 Thaparocleidus_legendrei, 18 Thaparocleidus_lebrunae, 19 Thaparocleidus_summagracilis_2, 20 Thaparocleidus_summagracilis_1, 21 Thaparocleidus_tacitus; TREE PAUP_1 = ((21:0.059539,(19:0.002234,20:-0.002234):0.036188):0.050388,(((5:0.003664,6:9.94E-4):0.019944,(12:0.002093,13:-5.52E-4):0.032842):0.035306,(((14:-0.003989,15:0.011825):0.121743,(3:0.008716,(1:0.004824,(2:0.001487,4:0.001599):0.004586):0.046087):0.0154):0.005877,(11:0.282167,((18:0.04171,(16:0.026857,17:0.0299):0.013321):0.009994,((7:-0.002216,8:0.00844):0.02725,(9:0.002034,10:-5.01E-4):0.036822):0.011903):0.010499):0.011625):0.00817):0.050388); END; BEGIN TREES; Title MLT_Thaparocleidus_18S_ITS1; LINK Taxa = Taxa; TRANSLATE 1 Thaparocleidus_citreum, 2 Thaparocleidus_alatus_1, 3 Thaparocleidus_alatus_2, 4 Thaparocleidus_caecus_1, 5 Thaparocleidus_caecus_2, 6 Thaparocleidus_sinespinae, 7 Thaparocleidus_rukyanii_1, 8 Thaparocleidus_rukyanii_2, 9 Thaparocleidus_durandi_1, 10 Thaparocleidus_durandi_2, 11 Thaparocleidus_siamensis, 12 Thaparocleidus_komarudini, 13 Thaparocleidus_levangi, 14 Thaparocleidus_combesi, 15 Thaparocleidus_crassipenis, 16 Thaparocleidus_turbinatio, 17 Thaparocleidus_legendrei, 18 Thaparocleidus_lebrunae, 19 Thaparocleidus_summagracilis_2, 20 Thaparocleidus_summagracilis_1, 21 Thaparocleidus_tacitus; TREE PAUP_1 = ((21:0.054482,(19:0.0,20:0.0):0.043899):0.052615,(((5:0.004944,6:0.0):0.021793,(12:0.00165,13:0.0):0.033604):0.054194,((11:0.275874,(14:0.0,15:0.008038):0.119513,(3:0.001304,(1:0.004529,(2:0.0,4:0.003186):0.00494):0.05915):0.021218):0.006243,((16:0.02131,17:0.037027):0.01589,(18:0.039893,((7:0.0,8:0.006488):0.018981,(9:0.001607,10:0.0):0.046322):0.023708):0.002882):0.015355):0.026341):0.052615); END; BEGIN TREES; Title MPT_Thaparocleidus_18S_ITS1; LINK Taxa = Taxa; TRANSLATE 1 Thaparocleidus_citreum, 2 Thaparocleidus_alatus_1, 3 Thaparocleidus_alatus_2, 4 Thaparocleidus_caecus_1, 5 Thaparocleidus_caecus_2, 6 Thaparocleidus_sinespinae, 7 Thaparocleidus_rukyanii_1, 8 Thaparocleidus_rukyanii_2, 9 Thaparocleidus_durandi_1, 10 Thaparocleidus_durandi_2, 11 Thaparocleidus_siamensis, 12 Thaparocleidus_komarudini, 13 Thaparocleidus_levangi, 14 Thaparocleidus_combesi, 15 Thaparocleidus_crassipenis, 16 Thaparocleidus_turbinatio, 17 Thaparocleidus_legendrei, 18 Thaparocleidus_lebrunae, 19 Thaparocleidus_summagracilis_2, 20 Thaparocleidus_summagracilis_1, 21 Thaparocleidus_tacitus; TREE PAUP_1 = ((21,(19,20)),(11,(((5,6),(12,13)),(((14,15),(3,(1,(2,4)))),((18,(16,17)),((7,8),(9,10))))))); TREE PAUP_2 = ((21,(19,20)),(11,(((5,6),(12,13)),(((14,15),(3,(1,(2,4)))),((16,17),(18,((7,8),(9,10))))))))[% ] [% ] [% setBetweenBits = selected ]; END;