#NEXUS [written Sat Oct 19 23:39:56 EDT 2013 by Mesquite version 2.75 (build 564) at Erin-PC/192.168.1.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Anoplophora_glabripennis_m963 Anoplophora_chinensis Apriona_germari_GH45_1 Apriona_germari_GH_45_2 Apriona_germari_GH45_3 Oncideres_albomarginata_chamela Leptinotasra_decemlineata_GH45_1 Sitophilus_oryzeae_GH45_1 Sitophilus_oryzeae_GH45_2 Leptinotarsa_decimlineata_GH45_2 Chrysomela_tremulae Diabrotica_virgifera Leptinotarsa_decimlineata_GH45_3 Leptinotarsa_decimlineata_GH45_4 Leptinotarsa_decimlineata_GH45_5 Leptinotarsa_decimlineata_GH45_6 Dendroctonous_ponderoseae_GH45_1 Leptinotarsa_decemlineata_GH45_7 Sitophilus_oryzeae_GH45_5 Dendroctonous_ponderoseae_GH45_2 Leptinotarsa_decemlineata Sitophilus_oryzeae_GH45_4 Sitophilus_oryzeae_GH45_3 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=261; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Anoplophora_glabripennis_m963 ---MKLLLLIVAVFYTFQGSFSKDYNVVPIVGGISGTGVTTRYWDCCKPSCAWAENLKVETD-TPVASCSTDGSTVVNASVQS--ACIG-GGAYMCSNQQPKAVNETFALGFVAASFTGGADTNYCCACVRLTFQS----PIQGKQMVVQVTNTG-----GDLGSNHFDIALPGGGVGIFTEGCSSQWGCP-SNGWGDQYGGVA-SESDCSTLPEVLQDGCKFRFQFLQGASNPGVTFEQVECPSELTSITGCNYS----- Anoplophora_chinensis ---MKLLLLIAAVFYTFHGSFSKDYNVVPIVGGISGTGVTTRYWDCCKPSCGWAENLKVETD-TPVATCSADGSTVVNASVQS--ACIG-GDAYMCSNQQPKAVNETFALGFVAASFTGGADTNYCCACVRLTFQS----PIQGKQMVVQVTNTG-----GDLGSNHFDIALPGGGVGIFTEGCSSQWGCP-SNGWGDQYGGVA-SESDCSTLPAVLQDGCKFRFQFLQGASNPGVTFEQVECPSELTSITGCNYS----- Apriona_germari_GH45_1 ---MKVFVAILAVFCTFEVSLSKVYNLNKVPYGISGSGTTTRYWDCCKPSCGWVENLAKEG--TPVATCSADGSTTVAASVKS--SCVG-GTSYMCSNQQPKSVNSTFALGFVAASFTGGADTNYCCACIKLTFQD----ALQGKTMVVQVTNTG-----GDLGSNQFDIAIPGGGVGIFTDGCSSQWGTP-SNGWGDQYGGVG-SEADCAQLPSDLQEGCKFRFEFMEGASNPGVTFEQVDCPSELVSITGCNY------ Apriona_germari_GH_45_2 ---MKVFVAILAVFCTFEVSLSKVYNLNKVPYGISGSGTTTRYWDCCKPSCGWVENLAKEG--TPVATCSADGSTTVAASVKS--SCVG-GTSYMCSNQQPKSVNSTFALGFVAASFTGGADTNYCCACIKLTFQD----ALQGKTMVVQVTNTG-----GDLGSNQFDIAIPGGGVGIFTDGCSSQWGTP-SNGWGDQYWWVWGSEADCAQLPSDLQEGCKFRFEFMEGASNPGVTFEQVDCPSELVSITGCNY------ Apriona_germari_GH45_3 ---MKVLLAVVAVLCTFEASLSQDYHVTPLVGGVSGTGKTTRYWDCCKPSCSWKANLKSKSG-KPVEACAADGKTVVKESTKS--ACEEGAGAYMCSDQQPKVVNSTFALGYVAASFTGGIDVNMCCACLRLKFQG----DLSGKQMIVQVTNTG-----SDLGSNQFDIAIPGGGVGIFTKGCSSQWGTP-SNGWGDQYGGVS-SESQCSQLPSSLREGCKFRFTFMKSVSNPAVTFEQVSCPSEIVSASGCNYS----- Oncideres_albomarginata_chamela -----MKVIILVLAVLYTAQAEKHYHSIPVKYGVSGSGVTTRYWDCCQPSCGWSENLNNPSG-TPVTACTADGSTAAPSNAES--SCIG-GTAYMCSSQQPRMVNSSFALGYVAASFSGGADTSMCCACIRLDFQG----DLSGKSMIVQVTNTG-----GDLGSNHFDIAIPGGGVGIFTEGCSSQWGCP-STGWGDQYGGVS-SEAECSQLPSALQSGCAFRFQFLGGVSNPPVNFEQVECPGDLTGATGCTY------ Leptinotasra_decemlineata_GH45_1 ---MKIALLALFVTYAVALPSD-NEDIIPVPGGRSGWGTTTRYWDCCKPSCAWVENIKTRDM-HAVNTCDSKGKNVLKPSVKS--GCDGG-TAYMCNNQQPFVVNKTLAYGFAAASFTGGVDTNLCCACFLLTFQG----QLSGKQLLVQNTNSG-----GDLGANQFDIATPGGGVGIFTSGCHDQWNAP-WSGWGDQYGGVH-SAEECNTLPQELQSGCRFRFEFMENVSNPQVQFQQVVCPKKLVEITGCNL------ Sitophilus_oryzeae_GH45_1 ------MKVLCVILAVAAFARATDIHLQKVVGGISGEANTTRYWDCCKPSCSWAENVNAQS---PVASCAVDGVTVLDPSSGSGCAEDGSGISYVCTNQQPWAVNDTVAFGFAAASFSGGADNSQCCVCLQLSFLN----VLPNKKLIVQVTNTG-----GDLESNHFDIQLPGGGVGYFTHGCVSQWNCP-ANGWGAQYGGIT-SESECNELPEVLQPGCHFRFNWFENADNPKVTFEQVVCPSELTSITGCVV------ Sitophilus_oryzeae_GH45_2 ------MKLLCLFLAAATVVQARDIHLQQVVGGVSGSGTTTRYWDCCKPSCAWKENVETAS---PVASCAADGVTTVDPSTRSGCDSDGS--SYTCNNQQPWVVNSTFAFGFAAASFTGGADNSQCCICVQLSFLS----TITEKTLVVQVTNTG-----ADLGSNHFDIQLPGGGVGYFTTGCSSQWNCP-ANGWGSQYGGIT-SDSECSELPEVLQPGCHFRFNWFQNADNPNVNFQQVVCPSELTSITGCA------- Leptinotarsa_decimlineata_GH45_2 ---MKLLVISLVLAAGYASPHDRSPDIIPIDGGVKGDGVTTRYWDCCAPSCAWDEIVHTKNG-IPIQTCQKDGITPSRKEDNAQSGCVEGGQAYTCTNQSPYLVNETLAFGFSASSFNGGIDTAQCCMCVLLSFKD----QLAGKQMLVQLTNTG-----SDLGQNHFDIAIPGGGVGIFTLGCSTQWGVP-ENGWGERYGGVTSIEECD-ELPDVLQEGCRFRFTFMEGVSNPAVSFYQVKCPAELIDISKCGDRD---- Chrysomela_tremulae --MKLSVVILTTYLSLGYSASEPSPTIIPRQGGLSGTGITTRYWDCCKPSCSWADHVTYTKNATPVTSCSVDGVTEIDAGIQSGCAEDGSGSSYTCSNQQPFIVNSTLAYGFAAASFIGGEDYGWCCSCMLLSFQG----QLAGKQMLVQVTNTG-----SPLSTNQFDIEIPGGGVGLYPYGCATQWGADPESGWGERYGGVSSAEECS-QLPESLQAGCLWRFDFMEGVSNPNVTFYQVECPSELVAITGCDY------ Diabrotica_virgifera --MKIAILVSALVALAVATPLEQSPEIKFIEKGISGEGTTTRYWDCCKPSCSWRGNVHTPSG-VPVASCDRSGVNRVDANAKS--GCEGGGSAYMCNSQQPWAVNSTLAYGFGAASFSNGVDVSLCCACFLLSFKD----QISNKKMIVQVTNTG-----SDLSHNHFDIALPGGGVGIFTQGCHDQWNAP-WNGWGDQYGGVH-NRGECATLPQALQSGCYFRFDFYQNANNPRMHFDQVQCPAEIVARSGCSL------ Leptinotarsa_decimlineata_GH45_3 ---MVTALAFILFACVASSTGEDSPDIIPVPGGLSGTGITTRYWDCCKPSCSWRENLRNTS-ADPVTSCAIDGNTVIDPEAMSNCGG---GPSYMCSNQQPFVVNSTLAYGFAGASFTGKADYQLCCGCVLLSFTG----ALSHKKMVVQVTNTG-----ADAVANQFDLALPGGGVGIN-NGCISQWNAP-PDGWGKRYGGVDTEAECD-QLPRQLQDGCRFRFEFMESVSNPSVNFVQVECPKEIVDRSHCNLK----- Leptinotarsa_decimlineata_GH45_4 --MKGFVVLLITVAFFDASTGEPSPEIIPVEGGLSGDGITTRYWDCCKPSCGWADLVNNTRFKTPVHTCAIDGIEIIDPQQQSGCADVG--AAYTCSNQQPFVVNSTLAYGFSAVSFTGGEDYHMCCSCMLLNFQG----QLSGKKMLVQITNTG-----SPLAVNQFDIELPGGGVGIYPHGCMKQWNAS-ETGWGDTFGGVHSDAECS-ELPAVLQPGCHFRFQFMEGVSNPPVTFQQVQCPRELVAITGCEY------ Leptinotarsa_decimlineata_GH45_5 ---METALALILLACVASSTGEYSPDIIPVPGGLSGTGITTGYWDCCKPSCSWRGNLRNTS-ADPVTSCAIDGDTVIDPEAMSNCGG---GPSYMCTNQQPFVVNSTLAYGFTAASFTGKADYKLCCGCVLLSFIG----ALSHKKMLVQITNTG-----ADLVVNQFDLAFPGAGVGIN-NGCISQWNAP-PDGWGKRYGGVDTEAECD-QLPWQLQDGCRFRFEFMESVPVPNVTFVQVECPKELVDISHCNLK----- Leptinotarsa_decimlineata_GH45_6 MIVNIISFLFVITSCVTAGTIDYYPNVEVIEGGISGDAITTRYWDCCKPSCGWRGNLNDHT-ANPVTSCAADGVTVLDPEIMAACDPGKNGTSYMCNNQQNYAVNDTFAYGYVAASFTGGVDYSYCCACVLLSFKS----GLEGKYMLAQITNAG-----SDLHANQFDIAIPGGGVGLH-NGCDLQWHSG-PDGWGDRVMGIDTREECDTLLPEPLRSGCYFRFDFMEGIPNPDVSFKQVKCPKELIANTGCNM------ Dendroctonous_ponderoseae_GH45_1 --MRGLAVILLAQLAVFAQAS---TDVIPIPDGVSGSGITTRYWDCCKAGCSWQENLSESGATSPVRSCAADGQTTIDIETQSGCTDTG-DVAYMCSDQQPWVYNETLSFGWVAASFGGGSEYNKCCHCLLLKLQG----QLAGKSMLVQITNTG-----SPLGQNHFDVAMPGGGAGLYATGCTNEWDSP-VGGWGDPISGISSVEECS-ELPASLQSGCQWRFGWFEGVDNPDVEFLEIECPSELTSISGCVVAN---- Leptinotarsa_decemlineata_GH45_7 -MRHVIVLALIIFGYVSTCTSEPSPEIIPIPGGKQGTGVTTRFWDCCKPSCSWRGNLRNTS-ATPVTSCGIDGDTAVDPDLMSACDLQNKGPAYMCTNQQPFVVNSTLAYGYVAASFTGSTDYQLCCGCVLLSFQG----QLAGKHLLAQVTDAG-----SDLVVNQFDIAIPGGGVGIG-NGCTEQWNAP-PDGWGARYGGISTEEECD-ELPIQLQPGCHFRFQFMEGVPNPDVTFIQVECPRELVDTTGCELRV---- Sitophilus_oryzeae_GH45_5 MKVLIVLTIYLGAVFCGSVLPERKPEIKKVVGGFSGSCTTTRYWDCCKPTCAWKENIDTDVG--PVKACNIDGVNISDVEAQSGCGGGS---SYMCNNQQSIIVNSTFAYGFAAAVFIS-PPENLCCACFLVNFQKGEWGDCAGKQMIVQLTNTGG-SSSVNGTENNIEIAMPGGGVGYFTEGCKTQWNAP-DQGWGEQYGGVT-TEDGCNDLPTQLQPGCKFRWEFLNGCSNPPATFEQVVCPQEIVDISGCKTD----- Dendroctonous_ponderoseae_GH45_2 --MKFFVALLALATCVASQS---SPEIIPIPDGLSGDGVTTRYWDCCKPSCGWSYETHET---VAVETCAIDGVTPVDDNQQSGCDDDGTGTAFTCSNNQPWVVNSTLSYGFVAASFTGGVDVSHCCHCVLLNFQG----DLAGKSLLALITNTG-----EPLATNQFDIEIPGGGVGIYPYGCYKQWGADPENGWGEQYGGVTTREECS-QLPADLQEGCNWRWDYMEGIGNPAVTFYQVQCPQELLNIAKCVRDDE--- Leptinotarsa_decemlineata --MQFLAVGSLVIVALATCSAENSPEIIQIEGGLSGTGPTTRYWDCCKPTCSWPGNVEYKT---PVKSCAADGVTANDPEIQSGCEKDG--HSYICTNQAGFVVNSTLAYGFAAARFIG-TKRNMCCSCVLFSFQQE---QLKGKKMLVQVTNTGN---APETGTNLFDIAMPGSGVGYYTQGCTSQWNSD-VSNWGDQYGGVN-SEADCYKLPQALWEGCRFRFTWMQGVSNPDVSFYEVQCPKELLDISGCHPVG---- Sitophilus_oryzeae_GH45_4 MKVLIVLTFCIVYVFCGSILTQRQPEIKKVVGGYSGSCTTSRYWDCCKPTCSWKGNTNTDYG--PVRACSSDGYNVDDGNTESGCVGGS---SYMCNNQQSVVINSTLAYGFAAAMFIS-PPENMCCTCFLLSFQKGEWGDCSGKQMVVQITNTGAGSSNSSGDQNNIEVAMPGGGVGYYTEGCKTQWNAP-DLGWGDQYGGVT-TEDGCYELPTQLQDGCKFRWEFLNGCSNPPATFEQVVCPQEIVDISGCKMDPVWNS Sitophilus_oryzeae_GH45_3 MKVLIVLTICLGVVFCGSVISERKPEIKKVVGGFSGSCTTSRYWDCCKPTCSWKGNTDTDVG--PVKACSADGVTVSDEDTQSGCVGGS---SYMCNNQQSIVINSTLAYGFAAAVFKT-PPENMCCTCFLVTFQKGEWGDCSGKQMVVQLTNTGG-SSSVNGTEDNIEIGMPGGGVGYYTEGCKTQWNAP-DQGWGDQYGGVT-TEDGCNDLPTQLQSGCKFRWEFLNGCSNPPATFEQVVCPQEIVDISGCKMD----- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 261; END; BEGIN TREES; Title 'Trees from "GH45.WAGG.consensus.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Anoplophora_glabripennis_m963, 2 Anoplophora_chinensis, 3 Apriona_germari_GH45_1, 4 Apriona_germari_GH_45_2, 5 Apriona_germari_GH45_3, 6 Oncideres_albomarginata_chamela, 7 Leptinotasra_decemlineata_GH45_1, 8 Sitophilus_oryzeae_GH45_1, 9 Sitophilus_oryzeae_GH45_2, 10 Leptinotarsa_decimlineata_GH45_2, 11 Chrysomela_tremulae, 12 Diabrotica_virgifera, 13 Leptinotarsa_decimlineata_GH45_3, 14 Leptinotarsa_decimlineata_GH45_4, 15 Leptinotarsa_decimlineata_GH45_5, 16 Leptinotarsa_decimlineata_GH45_6, 17 Dendroctonous_ponderoseae_GH45_1, 18 Leptinotarsa_decemlineata_GH45_7, 19 Sitophilus_oryzeae_GH45_5, 20 Dendroctonous_ponderoseae_GH45_2, 21 Leptinotarsa_decemlineata, 22 Sitophilus_oryzeae_GH45_4, 23 Sitophilus_oryzeae_GH45_3; TREE 'GH45_cellulase' = ((10:0.54510830932,((17:0.61165657652,(11:0.20470188008,(14:0.2335074955,20:0.3975393413)37.60:0.0918663834043)64.80:0.107994224784)59.00:0.0892192486441,((13:0.0611803652,15:0.0483959993)99.60:0.161766768976,(16:0.5464321284,18:0.17192298856)67.40:0.0837399081899)97.80:0.154653788139)51.80:0.089247691583)44.60:0.0332285556054,((21:0.40135448624,(19:0.08055617522,(22:0.12606034048,23:0.02782112504)51.80:0.0612967822394)100.00:0.580120508)44.40:0.112315595766,((7:0.27132298312,12:0.38827012138)80.20:0.113664017282,((8:0.18055072388,9:0.10723651234)100.00:0.33842820576,(5:0.19772835428,(6:0.30675299956,((1:0.01798004026,2:0.00932139406):0.119600052725,(3:1.0E-8,4:0.01208232378)100.00:0.15311896324)95.40:0.0831571658842)62.20:0.0572174587879)33.00:0.170115494081)89.20:0.151628238035)69.20:0.0661160429577[%selected = on ])28.40:0.0332285556054)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 261; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 261; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1382240397081; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8739175541747204787; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 415068155003389385; mqVersion 275; checksumv 0 3 3964628609 null getNumChars 261 numChars 261 getNumTaxa 23 numTaxa 23 short false bits 1048575 states 1048575 sumSquaresStatesOnly 6.1881091424176E13 sumSquares 6.1881091424176E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8739175541747204787 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8739175541747204787; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; setActive; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8739175541747204787 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1892.1382240245511.1015190816439856449; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #415068155003389385 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;