#NEXUS [written Wed Oct 23 13:11:10 MST 2013 by Mesquite version 2.75 (build 564) at schumaker10/169.254.2.143] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=12; TAXLABELS Arabidopsis_thaliana_NHX1 Arabidopsis_lyrata_NHX1 Capsella_rubella_NHX1 Neslia_paniculata_NHX1 Eutrema_salsugineum_NHX1 Brassica_rapa_NHX1a Brassica_rapa_NHX1b Schrenkiella_parvula_NHX1 Sisymbrium_irio_NHX1 Leavenworthia_alabamica_NHX1a Leavenworthia_alabamica_NHX1b Aethionema_arabicum_NHX1 ; END; BEGIN CHARACTERS; TITLE 'NHX1_nucl'; DIMENSIONS NCHAR=1650; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Arabidopsis_thaliana_NHX1 ATG------------------TTGGATTCTCTAGTGTCGAAACTGCCTTCGTTATCGACATCTGATCACGCTTCTGTGGTTGCGTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGTCATCTTTTGGAAGAGAATAGATGGATGAACGAATCCATCACCGCCTTGTTGATTGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCGCATCTTCTCGTCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTCCGCAATTTCGTGACTATTATGCTTTTTGGTGCTGTTGGGACTATTATTTCTTGCACAATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAGTTGGACATTGGAACCTTTGACTTGGGTGATTATCTTGCTATTGGTGCCATATTTGCTGCAACAGATTCAGTATGTACACTGCAGGTTCTGAATCAAGACGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCAACGTCAGTTGTGGTCTTCAACGCGATTCAGAGCTTTGATCTCACTCACCTAAACCACGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTCCTAAGTACCTTGCTTGGTGCTGCAACCGGTCTGATAAGTGCGTATGTTATCAAGAAGCTATACTTTGGAAGGCACTCAACTGACCGAGAGGTTGCCCTTATGATGCTTATGGCGTATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGCGGTATCCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAATGTAACGGAGAGCTCAAGAATAACAACAAAGCATACCTTTGCAACTTTGTCATTTCTTGCGGAGACATTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTGAGTGACACACCGGGAACATCGATCGCAGTGAGCTCAATCCTAATGGGTCTGGTCATGGTTGGAAGAGCAGCGTTCGTCTTTCCGTTATCGTTTCTATCTAACTTAGCCAAGAAGAATCAAAGCGAGAAAATCAACTTTAACATGCAGGTTGTGATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCTATGGCTCTTGCATACAACAAGTTTACAAGGGCCGGGCACACAGATGTACGCGGGAATGCAATCATGATCACGAGTACGATAACTGTCTGTCTTTTTAGCACAGTGGTGTTTGGTATGCTGACCAAACCACTCATAAGCTACCTATTACCGCACCAGAACGCCACCACGAGCATGTTATCTGATGACAAC---ACCCCAAAATCCATACATATCCCTTTGTTGGAC---------CAAGACTCGTTCATTGAGCCTTCAGGGAACCAC---AATGTGCCTCGGCCTGACAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGGAGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGTACCCTTTGTTCCAGGTTCTCCAACTGAGAGAAACCCTCCT---GATCTTAGTAAGGCT Arabidopsis_lyrata_NHX1 ATG------TTGGCATCACATTTCGATTCTTTAGTGTCGAAACTGCCTTCGTTATCGACATCTGATCACGCTTCTGTGGTTGCGTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGTCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACCGCCTTATTGATTGGGCTAGGCACTGGTGTTGCCATTTTGTTGATTAGTAAAGGAAAAAGTTCACATCTTCTCGTCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATCATATTCAATGCAGGGTTTCAAGTTAAAAAGAAGCAGTTTTTCCGCAATTTCGTGACTATTATGCTTTTCGGTGCTGTTGGGACTATTATTTCTTGCACAATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAATTGGACATTGGGACCTTTGACTTGGGTGATTATCTTGCTATCGGTGCAATATTTGCCGCAACAGATTCTGTGTGTACACTGCAGGTTCTGAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCCACATCAGTTGTTGTCTTCAACGCGATTCAGAGTTTTGACCTCACTCACCTAAACCATGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTCCTAAGTACCTTGCTTGGTGCTGCAACCGGTTTGATAAGTGCGTATGTCATCAAGAAGTTATATTTTGGAAGGCACTCAACAGACCGAGAAGTTGCCCTTATGATGCTTATGGCATATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTTACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAATGTAACCGAGAGCTCAAGAATAACTACAAAGCATACCTTTGCAACATTGTCGTTTCTTGCGGAGACATTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTGAGTGACACACCGGGAACATCAATCGCAGTGAGCTCAATCCTAATGGGTCTGGTCATGCTTGGAAGAGCAGCATTCGTCTTTCCGTTATCGTTTCTATCTAACCTAGCCAAGAAGAACCAAAGCGAGAAAATCAAATTTAACATGCAGGTTGTGATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCTATGGCTCTTGCATACAATAAGTTTACAAGGGCCGGACACACAGATGTACGTGGGAATGCAATCATGATCACCAGTACGATAACCGTCTGTCTTTTTAGCACAGTGGTGTTTGGTATGCTGACCAAACCGCTCATAAGCTACCTATTGCCGCACCAGAACGCCACCACGAGTATGTTATCTGATGACAAC---ACCCCAAAATCCATCCATATCCCTTTGCTAGAC---------CAAGACTCATTCATTGAGCCTTCAGGGAACCAC---AATGTGCCTCGGCCTGACAGTATACGTGGCTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGGAGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGTCCCTTTCGTCCCTGGTTCTCCAACTGAGAGAAACCCTCCT---GATCTCAGTAAGGCT Capsella_rubella_NHX1 ATG------TTGGCAACACATCTCGATTCTATAGTATCGAAATTGACA---------ACATCTGATCACGCTTCTGTGGTTGCGTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGTCATCTTTTGGAAGAGAATCGATGGATGAACGAATCCATCACCGCCTTATTGATTGGGCTTGGCACTGGTGTTGCCATTTTGTTGATTAGTAAAGGAAAAAGCTCACATCTTCTTGTCTTCAGTGAAGATCTCTTCTTCATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTTCGCAATTTCGTGACTATTATGCTTTTCGGTGCTGTTGGGACTATTATATCTTGCACGATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAATTGGATATTGGAACCTTTGACTTGGGTGATTATCTTGCTATTGGTGCCATATTTGCTGCAACAGATTCTGTGTGTACACTGCAGGTTTTGAATCAAGATGAGACACCGTTGCTTTACAGTCTTGTGTTCGGAGAGGGTGTTGTGAATGATGCCACATCAGTTGTGGTCTTCAACGCAATTCAGAGCTTTGACCTCACCCACTTAAACCATGAAGCTGCTTTTCATCTTCTTGGAAACTTTTTGTACTTGTTTCTCCTGAGTACCTTGCTTGGTGCTGCAACTGGTCTGATAAGTGCATATGTCATCAAAAAGCTATACTTTGGAAGGCATTCAACCGACCGAGAGGTTGCTCTCATGATGCTTATGGCATATCTTTCTTATATGCTTGCTGAGCTTTTCGAGTTGAGTGGTATTCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAATGTAACCGAGAGCTCAAGAATAACAACCAAGCATACCTTTGCAACTTTGTCGTTTCTTGCGGAAACATTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTGAGTGACACCCCGGGAACATCAATCGCAGTGAGCTCAATCCTAATGGGCCTTATCATGGTGGGAAGAGCAGCATTCGTCTTTCCGTTATCGTTTCTATCTAACCTAGCCAAGAAGAACCAAAGCGAGAAAATCAAATTTAACATGCAGGTTGTCATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCTATGGCTCTTGCATACAACAAGTTTACAAGAGCCGGGCACACAGAAGTACGCGGTAATGCAATCATGATCACCAGTACTATTACCGTCTGCCTTTTCAGCACAGTGGTGTTTGGGATGCTGACCAAACCGCTCATAAGCTACCTATTGCCGCACCAGAGCGCCACCACGAGCATGTTATCTGATGACAAC---ACCCCAAAATCCATCCATATCCCTTTACTGGAC---------CAAGACTCGTTCATTGAGCCTTCAGGGAACCAC---AATGTGCCTCGGCCTGACAGTATACGTGGTTTCTTGACACGGCCTACTCGAACCGTGCATTACTACTGGAGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGTCCCTTTCGTCCCTGGTTCTCCAACTGAGAGAGACCCTCCG---GATCTCAGTAAGGCT Neslia_paniculata_NHX1 ATG------TTGGCATCACATCTCGATTCTCTAGTTTCTAAATTGACT---------ACATCTGATCACGCCTCAGTGGTTGCGTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTACTTGGTCATCTTTTGGAAGAGAACCGATGGATGAACGAATCCATCACCGCCTTATTGATTGGACTTGGCACTGGTGTTGCCATTTTGTTGATTAGTAAAGGAAAAAGCTCACATCTTCTTGTCTTCAGTGAAGATCTCTTCTTCATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAGTTTTTTCGCAATTTCGTGACTATTATGCTTTTCGGTGCTGTTGGGACTATTATTTCTTGCACGATCATATCTCTAGGTGTTACGCAGTTCTTTAAGAAATTGGACATTGGAACCTTTGACTTGGGTGATTTTCTTGCTATTGGTGCCATATTTGCGGCAACAGATTCTGTGTGTACACTGCAGGTTCTGAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCCACATCGGTTGTGGTCTTCAACGCAATTCAGAGCTTTGACCTCACCCATCTGAACCATGAAGCTGCTTTTCATCTTTTTGGAAACTTCTTGTATTTGTTTCTCCTGAGTACCTTGCTTGGTGCTGCAACCGGTCTGATAAGTGCGTATGTCATTAAAAAGCTTTACTTTGGAAGGCACTCAACTGACCGAGAGGTTGCCCTCATGATGCTTATGGCGTATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGCGGTATTCTCACTGTGTTTTTCTGTGGTATTGTGATGTCCCATTACACATGGCACAACGTAACCGAGAGCTCAAGAATAACAACCAAGCATACCTTTGCAACTTTGTCTTTTCTTGCGGAGACATTTATTTTCTTGTATGTTGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTGAGTGACACCCCGGGAACATCAATCGCAGTGAGCTCAATCCTAATGGGCCTTATCATGGTTGGAAGAGCAGCATTCATCTTTCCGTTATCGTTTCTATCTAACCTAGCCAAGAAGAACCAAAGCGAGAAAATCAACTTTAACATGCAGATTGTGATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCAATGGCTCTTGCATACAACAAGTTTACAAGGGCGGGACACACAGATGTACGCGGGAATGCAATCATGATCACCAGTACTATAACCGTCTGTCTCTTTAGCACAGTGGTGTTTGGTATGCTGACCAAACCGCTCATAAGCTACCTATTGCCGCACCAGAGCGCCACAACGAGCATGTTATCCGATGAAAAC---ACCCCAAAATCCATCCATATCCCATTGCTGGAC---------CAAGACTCGTTCATTGAGCCTTCAGGGAACCAC---AATGTGCCTCGGCCTGACAGTATACGTGGTTTCTTGACACGGCCCACTCGAACCGTGCATTACTACTGGAGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGTCGTGGCTTTGTCCCTTTCGTCCCTGGTTCTCCAACTGAGAGAGACCCTCCT---GATCTCAGTAAGGCT Eutrema_salsugineum_NHX1 ATGGCAATGCTGGCATCATATTTCGATTCTTTTATATCTAAAATGCCGTCATTATCGACCTCTGATCACGCCTCTGTGGTTTCGTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTGCTTGGCCATCTTTTGGAGGAGAACCGATGGATGAACGAATCCATCACAGCGTTGTTGATTGGGCTTGCCACTGGTGTTGTCATTTTGTTGATTAGTAAAGGAAAAAGCTCACATCTTCTGGTCTTCAGTGAAGATCTTTTCTTCATATATCTCTTGCCACCCATAATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAATTTTTCCGCAATTTCGTGACTATTATGCTTTTTGGTGCTATTGGAACTGTTATCTCTTGCACTGTCATAACTTTAGGTGTAACGCAGTTCTTTAAGAAACTGGATATTGGGACCTTTGACTTGGGTGATTATCTTGCAATTGGTGCTATATTTGCTGCAACAGATTCTGTGTGCACTCTGCAGGTTCTGAATCAAGATGAGACACCTTTGCTATACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCCACATCGGTTGTTGTCTTCAACGCAATTCAGAGCTTTGACCTCACCCACCTTAACCATGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTTCTGAGCACATTGCTTGGTGTTGCAACCGGTCTGATAAGTGCCTATGTCATCAAAAAACTATATTTTGGAAGACACTCAACTGATCGAGAGGTTGCCCTCATGATGCTTATGGCGTATCTGTCTTATATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTCACCGTGTTTTTCTGTGGGATTGTGATGTCCCATTACACCTGGCACAACGTAACCGAGAGCTCGAGAATAACTACAAAGCATACCTTTGCAACTTTGTCGTTTCTTGCGGAGACATTTATTTTCTTATATGTCGGAATGGATGCCTTGGATATTGACAAGTGGAGATCCGTGAGTGACAGCCCGGGAACATCAGTCGCAGTGAGCTCAATCCTAATAGGCTTGCTCATGCTTGGAAGAGCAGCCTTCGTCTTTCCATTATCATTTCTGTCAAACTTAGCCAAGAAGAACGAAAGCGAGAAAATCAACTTTAAGATGCAAGTTGTCATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTATCAATGGCTCTTGCATACAACAAGTTTACAAGGGCCGGGCACACTGATTTACGCGGGAATGCAATCATGATCACCAGTACTATAACCGTCTGTCTTTTTAGCACCGTGGTGTTTGGTATGCTGACCAAACCGCTCATAAGACACCTATTACCGCACCAGAAAGCCACCACGAGCATGTTATCTGATGACAACAATACCCCAAAATCAATCCAGATCCCATTGCTGGAC---------CAAGACTCGTTTATTGAGTTCGCAGGGAACCAC---AATGTGCCTCGGCCTGACAGTATACGTGGCTTCTTGACACGGCCAACTAGAACGGTGCATTACTACTGGAGACAATTTGATGACTCCTTCATGCGACCTGTCTTTGGAGGTCGTGGCTTTGTTCCCTTCGTCCCTGGTTCTCCAACTGAGAGAGACCCTCCT---GATCTCAGCAAAGCT Brassica_rapa_NHX1a ATGACAATGATGGCATCGTTTTTGGATTCTTTAGTATCGAAAATGCCTTCGTTATCGACCTCTGATCACGCCTCTGTGGTTTCACTCAATCTCTTTGTTGCACTTCTCTGTGCTTGTATTGTCCTTGGCCATCTCTTGGAGGAGAATCGATGGATGAACGAATCCATCACCGCCTTAATGATTGGGCTGGCCACTGGTGTTGTGATCTTGTTGATTAGTAATGGAAAAAGCTCACGTCTTCTGGTCTTCAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATTATATTCAATGCTGGGTTTCAAGTAAAAAAGAAGCAGTTTTTCCGCAATTTTGTGACTATTATGCTCTTTGGTGCTATTGGAACTGTTATCTCTTGCACTGTCATAACTCTAGGTGTAACGCAGTTCTTTAAGAAATTGGACATTGGGACCTTTGACTTGGGTGATTATCTTGCAATTGGTGCCATATTTGCTGCAACAGATTCTGTGTGCACACTGCAGGTGCTGAATCAAGATGAGACACCTCTGCTTTACAGTCTTGTATTCGGAGAAGGTGTTGTGAATGATGCCACATCAGTTGTTGTCTTCAACGCCATTCAGAGCTTTGACCTCACCCACCTTAACCATGAAGCTGCTTTTCAACTTCTTGGAAACTTCATGTATTTGTTTCTCCTTAGCACCTTGCTTGGTGTTGCGACTGGTCTGATAAGTGCATATGTCATCAAAAAGCTATACTTTGGAAGACACTCAACTGACCGAGAGGTTGCCCTCATGATGCTTATGGCGTATCTTTCTTATATGCTCGCTGAGCTTTTCGACTTGAGTGGTATCCTCACTGTGTTTTTCTGTGGGATTGTGATGTCCCATTACACCTGGCACAACGTCACCGAGAGCTCAAGAATCACTACCAAGCATACCTTTGCTACTTTGTCGTTTCTTGCGGAGACATTTATTTTCTTGTATGTCGGAATGGATGCATTGGACATTGACAAGTGGAGATCGGTGAGTGACAGCCCGGGAACATCAGTAGCAGTGAGCTCAATCTTAATAGGTCTGCTCATGCTTGGAAGAGCAGCATTCGTCTTCCCATTATCTTTCCTGTCAAACTTAGCCAAGAAGAACGAAAGCGAAAAGATCAACTTCAAGATGCAAGTTGTGATTTGGTGGTCTGGTCTCATGAGAGGCGCTGTATCAATGGCTCTTGCATACAACAAGTTTACAAGTGCTGGGCACACGGATTTGCGTGGGAATGCAATCATGATCACAAGTACTATAACCGTCTGTCTTTTCAGCACTGTGGTGTTTGGTATGTTGACGAAACCACTCATAAGATTCCTATTGCCGCACCAGAAAGCCACCACGAGCTTTTTATCTGATGGCAAC---ACACCAAAGTCCATCCAGATCCCTTTGCTGGAC---------CAAGACTCGTTCATTGAGTTTACGGGGAACCAC---AATGTGCCTAGGCCTGACAGTATACGTGGCTTCTTGACACGGCCCACTAGAACAGTGCATTATTACTGGAGAAAGTTTGATGACTCCTTCATGAGACCTGTCTTTGGAGGACGTGGCTTTGTCCCTTTCGTCCCTGGCTCTCCTACTGAGAGAGACCCTCCT---GATCTCAGTAGAGCT Brassica_rapa_NHX1b ATG------ATGGCATCGCTTTTGGATACTTTAGTGTCTAAAATGCCTTCATTGTCTGCCTCTGATCACGCCTCTGTGGTCTCACTCAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTCCTTGGCCATCTTCTGGAGGAGAACCGATGGATGAACGAATCCATCACTGCCTTATTGATTGGGCTGGCTACTGGTGTTGTCATTTTGTTGATTAGTAATGGCAAAAGCTCACATCTTCTGGTCTTCAGTGAAGATCTTTTCTTCATTTATCTTTTGCCACCCATTATATTCAATGCTGGGTTTCAAGTGAAAAAGAAACAGTTTTTCCGCAACTTCGTGACTATTATGCTTTTTGGTGCTATTGGAACTGTTGTCTCTTGCACTGTCATAACACTAGGTGTAACGCAGTTCTTTAAGAAACTGGATATTGGGACCTTTGACTTGGGTGATTATCTTGCAATCGGTGCTATATTTGCTGCAACAGATTCCGTTTGCACACTGCAGGTTCTGAATCAAGACGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAAGGTGTTGTGAATGACGCCACGTCAGTTGTTGTCTTCAACGCGATTCAGAGCTTTGACCTCACTCACCTTAACCATGAAGCTGCTTTTCGACTTCTTGGGAACTTTTTCTATCTGTTTCTCCTCAGCACCTTGCTTGGTGTTGCGACCGGTCTGATAAGTGCATATATCATCAAAAAGCTATATTTTGGAAGACACTCCACTGACCGAGAGGTTGCCCTCATGATGCTTATGGCCTATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTCACTGTGTTCTTCTGTGGGATTGTGATGTCTCATTACACCTGGCACAACGTAACCGAGAGTTCAAGAATCACTACCAAGCACGCCTTTGCAACGTTGTCGTTTCTTGCGGAGACGTTTATTTTCTTGTATGTGGGAATGGATGCTTTGGACATTGACAAGTGGAGATCCGTGAGTGACAGTCCGGGAACATCGGTGGCAGTGAGCTCAATCCTAATAGGTTTGCTCATGCTTGGAAGAGCAGCATTCGTCTTTCCCTTGTCGTTTCTCTCAAACTTAGCCAAGAAGAACCAAAGCGAGAGAATCGACTTTAAGATGCAAGTTGTGATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCAATGGCTCTTGCATACAACAAGTTTACAAGGGCTGGGAAAACGGATTTGCGCGGGAATGCAATCATGATCACCAGTACCATAACCGTCTGTCTCTTTAGCACTGTGGTGTTTGGTATGTTGACAAAACCGCTAATAAGATTCCTATTGCCGCACCAGAAAGCCACCACGAGCTTTTTATCTGATGGCAAC---ACGCCAAAGTCCATCCAGATCCCTTTGATAGAC---------CAAGACTCGTTCATTGAGTTTGCAGGGAACCAC---AACGTGCCTAGGCCAGACAGTATACGTGGCTTCTTGACACGGCCCACTAGGACAGTGCATTACTACTGGAGACAGTTTGATGACTCCTTCATGAGGCCTGTGTTTGGAGGACGTGGCTTTGTCCCCTTTGTCCCTGGCTCTCCAACTGAGAGAGACCCTCCTACTGATCTCAGTAGAGCT Schrenkiella_parvula_NHX1 ATGACAATGCTGGCATCCCTTTTCGATCATTTCATACCTAATATGCCTTCGTTATCGACCTCTGATCACGCCTCTGTGGTTTCACTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTGCTTGGCCATCTTTTGGAAGAGAACCGATGGATGAACGAGTCCATCACCGCCTTATTGATTGGGCTGGGCACTGGTGTTGTCATTTTGTTGATTAGTAATGGAAAAAGCTCACATCTTCTGGTCTTCAGTGAAGATCTCTTCTTCATATATCTTTTGCCACCCATAATTTTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAATTTTTCCGCAATTTCGTGACCATTATGCTTTTTGGTGCTATTGGAACTGTTATTTCTTGCACTGTCATAACTCTAGGTGTAACTCAGTTCTTTAAGAAATTAGACATTGGGACCTTTGATTTGGGTGATTATCTTGCAATTGGTGCCATATTTGCTGCAACAGATTCTGTGTGCACTCTGCAGGTTCTGAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATTCGGAGAGGGTGTTGTGAATGATGCCACATCAGTTGTAGTCTTTAACGCAATTCAGAGCTTTGATCTCACCCACCTTAACCATGAAGCTGCTTTTCATCTTCTTGGAAACTTCTTGTATTTGTTTCTCCTGAGCACTTTGCTTGGTGTTGCAACTGGTCTGATAAGTGCATATGTTATCAAAAAGCTATATTTTGGAAGACACTCAACTGACCGAGAAGTTGCCCTGATGATGCTTATGGCGTATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTCACTGTGTTTTTCTGTGGGATTGTGATGTCCCATTACACCTGGCACAATGTAACCGAGAGCTCAAGAATAACGACCAAGCATACCTTTGCAACTTTGTCGTTTCTTGCGGAAACATTTATTTTCTTGTATGTCGGAATGGATGCCTTGGACATTGACAAGTGGAGATCCGTAAGTGACAGCCCGGGAACATCAGTCGCAGTGAGCTCAATCCTAATAGGTTTGCTCATGCTTGGAAGAGCAGCATTTGTCTTTCCGTTATCATTTCTGTCAAACTTAGCCAAGAAGAACCAAAGCGAGAGAATCAACTTTAAGATGCAAGTTGTTATTTGGTGGGCTGGTCTCATGAGAGGTGCTGTATCAATGGCTCTTGCATACAACAAGTTTACAAGGGCTGGGCACACGGATTTGCGTGGGAATGCAATCATGATCACCAGTACTATAACCGTGTGTCTTTTTAGCACCGTGGTGTTTGGTATGCTGACAAAACCGCTCATAAGACACCTATTGCCGCATCAGAAAGCCACCACGAGCATGTTATCTGATGACAAC---ACCCCAAAATCCATCCAGATCCCTTTGCTGGAC---------CAAGACTCATTCATTGAGTTTGCAGGGAACCAC---AATATACCTCGGCCTGACAGTATACGTGGCTTCTTGACACGGCCCACTAGAACCGTTCATTACTACTGGAGACAATTTGATGACTCCTTCATGCGACCCGTCTTTGGAGGCCGTGGCTTTGTCCCCTTCGTCCCTGGTTCTCCAACTGAGAGAGACCCTCCT---GATCTCAGTAGAGCT Sisymbrium_irio_NHX1 ATG------CTGGCATCACTTTTCGATTCTTTCGTATCTAATATGCCTTCATTGTCTACCTCTGATCACGCTTCTGTGGTTTCACTCAATCTCTTCGTTGCACTTCTTTGTGCTTGTATTGTGCTTGGCCATCTTTTGGAAGAGAACCGATGGATGAACGAGTCCATCACCGCCTTATTGATTGGCCTGGCCACTGGTGTTGTCATTCTGTTGATTAGTAAAGGGAAAAGCTCACATCTTCTGGTCTTCAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATAATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAATTTTTCCGCAATTTCGTGACTATTATGCTTTTTGGTGCTATTGGAACTGTTATTTCTTGCACAGTCATAACTCTAGGTGTAACCCAGTTCTTTAAGAAATTGGACATTGGGACCTTTGACTTGGGTGATTATCTTGCAATTGGTGCTATATTTGCTGCAACAGATTCTGTGTGCACACTCCAGGTTCTGAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTGTTCGGAGAAGGTGTTGTGAATGATGCTACATCAGTTGTTGTCTTCAACGCAATTCAGAGCTTTGACCTCACCCACCTTAACCATGAAGCTGCTTTTCACCTTCTTGGGAACTTTTTGTATTTGTTTCTCCTGAGCACCTTGCTTGGTGTTGCGACCGGTCTGATAAGTGCATATGTCATAAAAAAGCTGTATTTTGGAAGGCACTCAACTGACCGAGAGGTTGCCCTCATGATGCTTATGGCGTATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTCACTGTGTTCTTCTGTGGGATTGTGATGTCCCATTACACCTGGCACAACGTAACCGAGAGCTCAAGAATCACTACCAAGCATACCTTTGCAACTTTGTCGTTTCTTGCGGAGACATTTATATTCTTGTATGTCGGAATGGATGCCTTGGACATTGACAAATGGAGATCCGTGAGTGACAGCCCGGGAACGTCAGTCGCAGTGAGCTCAATCTTAATAGGTTTGCTAATGCTTGGAAGAGCAGCATTTGTCTTTCCCTTATCGTTTCTGTCAAACTTAGTCAAGAAGAACCAAAGCGAGAGGATCAACTTTAAGATGCAAGTTGTGATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCAATGGCTCTTGCATACAACAAGTTTACAAGGGGTGGGCACACGGATTTGCGCGGTAATGCAATCATGATCACAAGTACTATAACCGTCTGTCTTTTTAGCACCGTGGTGTTTGGTATGTTGACAAAACCGCTCATAAGATACCTATTGCCGCACCAGAAAGCCACCACGAGCATGTTATCTGATGACAAC---ACCCCAAAATCTATCCAGATACCTTTGTTGGAC---------CAAGACTCGTTCATTGAGTTTGCAGGGAACCAC---AATGTGCCTCGGCCTGACAGTATACGTGGCTTCCTGACACGGCCCACTAGAACAGTGCATTACTACTGGAGACAATTCGATGACTCCTTCATGCGACCTGTCTTTGGAGGCCGTGGCTTTGTCCCCTTCGTCCCTGGTTCTCCAACTGAGAGAGACCCTCCT---GACCTCAGTAGAGCT Leavenworthia_alabamica_NHX1a ATG------TTGGCATCACATTTTGATTCTTTATTATCTAAGTTACCTTCATTATCAACCTCTGATCATGCCTCTGTGGTTTCATTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTACTTGGTCATCTTTTGGAGGAGAATCGATGGATGAACGAATCCATCACAGCTTTATTAATTGGACTTGCTACTGGTGTTGTCATTTTGTTGATTAGTAAAGGAAAAAGCTCACATCTTCTCGTCTTCAGTGAAGATCTTTTCTTCATATATCTTTTACCACCTATAATATTCAATGCAGGGTTTCAAGTTAAAAAGAAGCAATTTTTTCGCAATTTCGTGACTATTATGCTTTTTGGTGCTATTGGGACTGTTATATCTTGCACAATCATATCTCTTGGTGTAACACAGTTCTTTAAGAATTTAGACATTGGGACCTTTGACTTGGGTGATTATCTTGCAATCGGTGCCATATTTGCTGCAACAGATTCTGTGTGCACTCTTCAGGTTCTGAATCAAGATGAGACACCTTTGCTATACAGTCTTGTATTCGGAGAAGGTGTTGTGAATGATGCCACATCAGTTGTTGTCTTCAATGCAATTCAAAGCTTTGATCTCACCCATCTTAACCATGAAGCTGCTTTTCAACTTCTTGGAAACTTCTTGTATTTGTTTCTTCTAAGTACCTTACTTGGTGTTGCAACTGGTTTGATAAGTGCATATGTCATCAAAAAGCTATATTTTGGAAGGCACTCAACCGACCGAGAAGTTGCTCTCATGATGCTTATGGCATATCTTTCTTATATGCTTGCTGAGCTTTTCGACTTGAGTGGTATTCTCACTGTGTTCTTCTGTGGGATTGTGATGTCTCATTACACATGGCATAATGTAACCGAGAGCTCAAGAATCACAACCAAGCATGCCTTTGCAACTTTGTCGTTTCTTGCGGAGACATTTATCTTCTTGTATGTTGGAATGGATGCTTTGGACATGGACAAATGGAGATCCGTGAGTGACAGTCCAGGAACATCAGTTGCAGTGAGTTCAATCTTAATGGGTCTGGTCATGCTTGGAAGAGCTGCATTTGTCTTTCCATTATCGTTTCTATCGAACTTAGCCAAGAAGAACGATAGCGAGAAAATCAACATAAAGATGCAGGTTGTGATTTGGTGGTCTGGTCTCATGAGAGGTGCTGTATCAATGGCTCTTGCCTACAACAAGTTTACAAGGGCTGGCCGCACGGATTTACGCGGGAATGCAATCATGATCACAAGTACTATAACTGTGTGTCTTTTTAGCACTGTGGTGTTTGGTATGCTGACCAAACCGCTTATAAGATATCTACTGCCGCATCAGAATGCAACAACGAGCATGTTATCTGATGACAAC---ACTCCAAAATCAATCCAGATCCCTTTGCTAGAC---------CAAGACTCGTTCATCGAGTACCCAGGGAACCAC---AATCTGCCACGGCCTGATAGTATACGGGGCTTCTTAACACGGCCTACACGAACCGTGCATTACTACTGGAGATTGTTTGATGATTCATTCATGAGACCTGTCTTTGGAGGTCGTGGGTTTGTTCCCTTTGTTCCTGGTTCACCAACTGAGAGAGATCCTCCT---GATCTTAGTAAAGCT Leavenworthia_alabamica_NHX1b ATG---TTGTTAACATCACATGTCGATTCCTTATTGTCTAAACTATCTTCACTATCAACCTCTGATCATGCCTCTGTGGTTTCATTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTTCTTGGCCATCTTTTGGAAGAGAATCGATGGATGAATGAATCCATCACTGCTTTACTGATAGGACTTGCCACTGGTGTTGTCATTTTGTTGATTAGTAAAGGAAAAAGCTCACATCTTCTTGTCTTTAGTGAAGATCTCTTCTTTATATATCTTTTGCCACCCATTATATTCAATGCAGGGTTTCAAGTAAAAAAGAAGCAATTTTTTCGGAATTTTGTGACTATTATGCTTTTTGGTGCTATTGGGACTGTTATTTCTTGCACCATCATATCTCTAGGTGTAACACAGTTCTTTAAGAAATTAGACATTGGGACCTTTGACTTGGGTGATTATCTTGCAATTGGTGCTATCTTTGCTGCAACAGATTCTGTGTGCACACTTCAGGTTCTGAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATTTGGAGAAGGTGTTGTCAATGATGCCACATCAGTTGTTGTCTTCAACGCAATTCAAAGCTTTGATCTCACCCATCTTAATCATCAAGCTGCTTTTCAACTTCTTGGAAACTTCTTGTATTTGTTTCTCTTGAGTACTTTGCTTGGTGTTGCAACCGGTTTGATAAGTGCGTATGTCATCAAAAAGCTATACTTTGGAAGGCACTCAACCGATCGAGAGGTTGCTCTTATGATGCTTATGGCTTATCTTTCTTATATGCTTGCTGAGCTTTTTGACTTGAGTGGTATTCTCACTGTGTTCTTCTGTGGTATTGTAATGTCCCATTACACATGGCACAACGTGACCGAGAGCTCAAGAATAACAACCAAGCATACCTTTGCAACTTTGTCTTTTCTTGCGGAAACATTTATATTCTTGTATGTTGGAATGGATGCCTTAGACATTGATAAGTGGAGATCCGTGAGTGATAGCCCGGGAACATCAGTTGCAGTGAGCTCAATCCTAATGGGTCTAGTCATGCTTGGAAGAGCAGCATTTGTATTTCCGTTATCGTTTCTATCGAACCTAGCTAAGAAGAACGAAAGCGAGAAAATCAACATTAAGATGCAGGTTGTGATTTGGTGGTCTGGTCTTATGAGAGGTGCTGTATCAATGGCTCTTGCATACAACAAGTTTACAAGGGCAGGCCGGACAGATTTACGCGGGAATGCAATCATGATCACGAGTACTATAACTGTCTGTTTATTTAGCACCATGGTGTTTGGTATGTTGACTAAACCACTCATAAGATACTTATTACCACACCAAAAAGCCACAACAAGCATGTTATCTGATGACAAC---ACTCCAAAATCAATCCAGATCCCTTTGCTAGAT---------CAAGACTCGTTCATCGAGTTCGCAGGGAACCAT---AATTTTCCACGGCCTGATAGTATACGTGGATTCCTAACACGGCCAACTCGAACCGTGCATTACTACTGGAGACAGTTTGATGACTCTTTCATGAGACCTGTCTTTGGAGGTCGTGGCTTTGTTCCTTTTGTACCTGGTTCTCCAACTGAGAGAAACCATCCT---CATCTCAGTAGACCT Aethionema_arabicum_NHX1 ATG------CTGGCATCACATTTTGGATCGTTAGTGTCTAAAATGTCTTCACTTTCCACCTCTGATCACGCCTCTGTGGTTTCTTTGAATCTCTTTGTTGCACTTCTTTGTGCTTGTATTGTGATTGGGCATCTTTTGGAGGAGAACCGATGGATGAACGAATCCATCACCGCCTTAATGATTGGGCTTGCTACTGGTGTTGTAATTTTGTTAATCAGTAATGGGAGAAGCTCACATCTCCTTGTCTTCAGTGAAGATCTTTTCTTCATATATCTTTTGCCACCCATAATATTCAACGCAGGGTTTCAAGTAAAAAAGAAGCAATTTTTCCGCAATTTCGTGACTATTATGCTCTTTGGTGCTATCGGGACTGTTATTTCGTGCACTGTTATATCTCTAGGTGTAATGCAGTTCTTTAAAAAATTAGACATCGGGACCTTTGACTTGGGTGATTATCTTGCAATCGGCGCCATATTTGCTGCAACAGATTCTGTGTGCACACTGCAGATTCTCAATCAAGATGAGACACCTTTGCTTTACAGTCTTGTATTTGGAGAAGGTGTTGTGAATGATGCCACATCAGTTGTACTCTTCAACGCAATTCAGAGCTTTGATCTCACTCACCTTAATCATGAAGCTGCGTTTCATCTTCTGGCAAACTTCTCTTACTTGTTTATCCTCAGCACTTTGCTTGGCGTTGCAACAGGTCTGATAAGTGCGTATGTAATCAAAAAGTTATATTTTGGAAGGCACTCAACTGACCGAGAGGTTGCCCTCATGATGCTTATGGCATATCTTTCTTATATGCTTGCTGAGCTATTCGACTTGAGCGGTATTCTTACTGTATTTTTCTGTGGGATTGTGATGTCACATTACACATGGCACAACGTAACAGAGAGCTCAAGAATAACTACCAAGCATGCCTTTGCCACTTTATCATTTCTGGCTGAGACATTTATTTTCGTATACGTTGGAATGGATGCTTTGGACATTGAGAAGTGGAGATCTGTAAGTGACAGCCCCGGGACATCGGTCGCAGTGAGCTCAATTCTAATGGGTCTAGTCATGGTTGGAAGAGCAGCTTTTGTCTTCCCTTTATCCTTTTTATCAAACCTAGCCAAGAAGAACCAAAGCGAGAAAATCGACTTCAAACAGCAAGTTGTTATCTGGTGGGCTGGTCTCATGAGAGGTGCTGTATCTATGGCTCTTGCGTACAATAAGTTTACAAGGTCCGGGCACACAGATTTACGAGGAAATGCAATCATGATCACAAGTACTATAACTGTTTGTCTTTTTAGCACTGTGGTCTTTGGTATGCTAACCAAACCGCTCATAAGATACCTATTACCGCAACAGAAAGCCACCACAAGCATGTTATCCGACGACAAC---ACGCCTAAATCTCTCCGTATCCCTTTCCTAGAGAATGATCAGCAAGACTCATTCGTAGAGTTCTCGGGGAACCACCACGATGTACCCCGTCCGGATAGCATTCGCGGCTTCTTGACCCGACCCACCCGCACCGTTCATCATTACTGGAGACAATTTGATGACTCTTTCATGCGTCCTGTCTTTGGAGGTCGTGGCTTTGTACCTTTTGTTCCAGGTTCTCCTACTGAAAGAGATCCTCCT---GATCTAAGTAAAGTT ; END; BEGIN TREES; Title 'NHX1_tree'; LINK Taxa = Taxa; TRANSLATE 1 Arabidopsis_thaliana_NHX1, 2 Arabidopsis_lyrata_NHX1, 3 Capsella_rubella_NHX1, 4 Neslia_paniculata_NHX1, 5 Eutrema_salsugineum_NHX1, 6 Brassica_rapa_NHX1a, 7 Brassica_rapa_NHX1b, 8 Schrenkiella_parvula_NHX1, 9 Sisymbrium_irio_NHX1, 10 Leavenworthia_alabamica_NHX1a, 11 Leavenworthia_alabamica_NHX1b, 12 Aethionema_arabicum_NHX1; TREE 'NHX1_tree' = ((((((6:0.03428727349986639,7:0.046374989569183706):0.018141823336755694,9:0.025782432313756584):0.00544040147984441,8:0.02843661154123179):0.006957684316410702,5:0.031582229791759175):0.011936163365806152,(((2:0.01783683801832482,1:0.025449580665368576):0.010003834833123474,(4:0.019961447583905716,3:0.023081717155933816):0.007231452248525757):0.029831041259307915,(10:0.05246937426040673,11:0.05824422537477892):0.02914267915867168):0.005831478257867449):0.06466163500316456,12:0.06466163500316456); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1650; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1650; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1650; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1382559070504; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8026704805408172016; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7023469725187503734; mqVersion 275; checksumv 0 3 2911188348 null getNumChars 1650 numChars 1650 getNumTaxa 12 numTaxa 12 short true bits 15 states 15 sumSquaresStatesOnly 495615.0 sumSquares 495615.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 147; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 944 946; setLocation 960 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7023469725187503734 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 960 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;