#NEXUS [written Thu Feb 20 09:44:22 JST 2014 by Mesquite version 2.75 (build 566) at Sotome-PC/10.15.40.227] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=37; TAXLABELS 'Aporpium strigosum_WD680' 'Aporpium strigosum_TFM_F_27651' 'Aporpium strigosum_TUFC14542' 'Aporpium strigosum_WD1710' 'Aporpium strigosum_Wei5621' 'Aporpium strigosum_TUFC10589' 'Aporpium strigosum_Wei5990' 'Aporpium caryae_WD2274' 'Aporpium caryae_Dai 3952' 'Aporpium caryae_Dai 4549' 'Aporpium caryae_WD2207' 'Aporpium hexagonoides_ML297' 'Aporpium hexagonoides_Wei5584' 'Aporpium hexagonoides_Wei5680' 'Aporpium hexagonoides_TFM_F_27498' 'Aporpium_efibulata' 'Aporpium dimidiata_O18238' 'Aporpium dimidiata_O18261' 'Exidia glandulosa_TUFC34008' 'Exidiopsis_calcea' 'Exidiopsis_sp' 'Exidiopsis grisea_TUFC100049' 'Exidia_crenata' 'Auricularia polytricha_TUFC12920' 'Auricularia polytricha_TUFC12867' 'Auricularia polytricha_HN4076' 'Auricularia_mesenterica' 'Heterochaete_delicata' 'Protodaedalea foliacea_Yuan5691' 'Protodaedalea foliacea_E701' 'Protodaedalea foliace_WD548' 'Pseudohydnum_gelatinosum' 'Heterochaetella_brachyspora' 'Protomerulius_africanus' 'Protomerulius_brasiliensis' 'Basidiodendron_eyrei' 'Tremella_foliacea' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=483; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX 'Aporpium strigosum_WD680' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium strigosum_TFM_F_27651' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium strigosum_TUFC14542' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggcgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium strigosum_WD1710' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium strigosum_Wei5621' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium strigosum_TUFC10589' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium strigosum_Wei5990' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium caryae_WD2274' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium caryae_Dai 3952' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium caryae_Dai 4549' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium caryae_WD2207' tttgaaatctggcggtctcaggccgtccgaattgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium hexagonoides_ML297' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgctttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium hexagonoides_Wei5584' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium hexagonoides_Wei5680' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium hexagonoides_TFM_F_27498' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium_efibulata' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcgtagagg 'Aporpium dimidiata_O18238' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgcgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Aporpium dimidiata_O18261' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgcgtacaagtcccttggaacagggcgtcatagagg 'Exidia glandulosa_TUFC34008' -tttgaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Exidiopsis_calcea' tttgaaatctggcggtctaaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Exidiopsis_sp' -tttgaatctggcggtctacggccgtccgagttgtaatctatagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Exidiopsis grisea_TUFC100049' -tttgaatctggcggtctacggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Exidia_crenata' tttgaaatctggcggtctacggccgtccgagttgtaatctatagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Auricularia polytricha_TUFC12920' -tttgaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Auricularia polytricha_TUFC12867' -tttgaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Auricularia polytricha_HN4076' tttgaaatctggcggtctcaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Auricularia_mesenterica' tttgaaatctggcggtctaaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcgtagagg 'Heterochaete_delicata' tttaaaatctggcggtctacggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Protodaedalea foliacea_Yuan5691' tttgaaatctggcggtcccaggccgtccgagttgtaatctagagaagcgttttccgcgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Protodaedalea foliacea_E701' tttgaaatctggcggcccaaggccgtccgagttgtaatctagagaagcgttttccgcgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Protodaedalea foliace_WD548' tttgaaatctggcggtccaaggccgtccgagttgtaatctagagaagcgttttccgcgccggaccgtgtacaagtcccttggaacagggcgtcatagagg 'Pseudohydnum_gelatinosum' tttgaaatctggcggtctacggccgtccgagttgtagtctagagaggtgtcttctgcgtcggaccatgcacaagtcccttggaacagggcgtcatagagg 'Heterochaetella_brachyspora' tttgaaatctggcggtctacggccgtccgagttgtagtctagagaggtgtctgccgcgccggaccgtgtacaagtcccttgggatagggcKtcatagagg 'Protomerulius_africanus' tttgaaatctggcggtctacggccgtccgagttgtagtctagagaggtgtcttccgcgccggaccgtgtacaattcccttgggatagggcgtcatagagg 'Protomerulius_brasiliensis' tttgaaatctggcggtctacggccgtccgagttgtagtctagagaggtgtctYccgcgccggaccgtgtacaattcccttgggatagggcgtcatagagg 'Basidiodendron_eyrei' tttgaaatctggcgcctcc--ggcgtccgagttgtaatctggagaggcatcgtccgcggcggacctcgtacaagtcctttgggatgaggcgtcatagagg 'Tremella_foliacea' tttgaaatctggcgtcctccgggcgtcagagttgtaatctacagaggcgttttccgcgccggtccgtgtccaattcccttggaacagggtatcaaagagg 'Aporpium strigosum_WD680' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium strigosum_TFM_F_27651' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium strigosum_TUFC14542' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium strigosum_WD1710' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgcgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium strigosum_Wei5621' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium strigosum_TUFC10589' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium strigosum_Wei5990' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium caryae_WD2274' gtgagaatcccgtccgtgacgcgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium caryae_Dai 3952' gtgagaatcccgtccgtgacgcgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium caryae_Dai 4549' gtgagaatcccgtccgtgacgcgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium caryae_WD2207' gtgagaatcccgtccgtgacgcgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium hexagonoides_ML297' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium hexagonoides_Wei5584' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium hexagonoides_Wei5680' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgatacaccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium hexagonoides_TFM_F_27498' gtgagaatcccgtccgtgacgcgga-cttccggtgctctgtgataccccttcgaagagtcgagttgtttgggaatgccgctcaaaatgggtggtaaattc 'Aporpium_efibulata' gtgagaatcccgtccgtgacgcgga-ctcccggtgctctgcgatacaccttcgaagagtcgagttgtttgggaatgcagctcaaaacgggtggtaaattc 'Aporpium dimidiata_O18238' gtgagaatcccgtccgtgacgcgga-ctcccggtgctctgcgatacgccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Aporpium dimidiata_O18261' gtgagaatcccgtccgtgacgcgga-ctcccggtgctctgcgatacgccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Exidia glandulosa_TUFC34008' gtgagaatcccgtccatgacacgga-ctcccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Exidiopsis_calcea' gtgagaatcccgtccatgacacgga-ctcccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Exidiopsis_sp' gtgagaatcccgtccatgacacgga-ctcccggtgctctgtgatacaccttc?aagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Exidiopsis grisea_TUFC100049' gtgagaatcccgtccatgacacgga-ctcccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Exidia_crenata' gtgagaatcccgtccatgacacgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Auricularia polytricha_TUFC12920' gtgagaatcccgtccatgacacgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Auricularia polytricha_TUFC12867' gtgagaatcccgtccatgacacgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Auricularia polytricha_HN4076' gtgagaatcccgtccatgacacgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaaYgggtggtaaattc 'Auricularia_mesenterica' gtgagaatcccgtccatgacacgga-ctaccggtgctctgtgatacaccttcaaagagtcgagttgtttgggaatgcagctcaaaacgggtggtaaattc 'Heterochaete_delicata' gtgagaatcccgtccatgacacgga-ctcccggtgcactgtgatacgccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Protodaedalea foliacea_Yuan5691' gtgagaatcccgtccgtgacacggaccccccggcgcactgcgatacgctttcgaagagtcgagttgtttgggaatgcagctcaaaacgggtggtaaattc 'Protodaedalea foliacea_E701' gtgagaatcccgtccgtgacacgga-cccccggcgcactgcgatacgctttcgaagagtcgagttgtttgggaatgcagctcataacgggtggtaaattc 'Protodaedalea foliace_WD548' gtgagaatcccgtccgtgacacgga-cccccggcgcactgcgatacgctttcgaagagtcgagttgtttgggaatgcagctcaaaacgggtggtaaattc 'Pseudohydnum_gelatinosum' gtgagaatcccgtccgtggcatgga-ctcccggtgctttgtgatgcgccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Heterochaetella_brachyspora' gtgagaatcccgtccatgacacgga-caaccggtgctctgtgatgcgccttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatcc 'Protomerulius_africanus' gtgagaaccccgtccatgacacgga-cccccggtgctctgtgatgcgccttcgaagagtcgagttgtttgggaatgcagctcaaaacgggtggtaaattc 'Protomerulius_brasiliensis' gtgagaaccccgtccatgacacgga-cccccggtgctctgtgatgcgccttcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattc 'Basidiodendron_eyrei' gtgagaatcccgtacgtgacgagga-ctaccgtcgctttgtgtcgtgccctcgaagagtcgagttgtttgggaatgcagctcaaaatgggaggtaaattc 'Tremella_foliacea' gtgacaatcccgtacttgacac-ga-ccgccggtgctttgtgatacgtcttctaagagtcgagttgtttgggaatgcagctcaaaacgggtggtaaattc 'Aporpium strigosum_WD680' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium strigosum_TFM_F_27651' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium strigosum_TUFC14542' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium strigosum_WD1710' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium strigosum_Wei5621' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium strigosum_TUFC10589' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium strigosum_Wei5990' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium caryae_WD2274' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium caryae_Dai 3952' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium caryae_Dai 4549' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium caryae_WD2207' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium hexagonoides_ML297' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium hexagonoides_Wei5584' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium hexagonoides_Wei5680' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium hexagonoides_TFM_F_27498' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium_efibulata' catctaaagctaaatacgggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium dimidiata_O18238' catctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Aporpium dimidiata_O18261' catctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Exidia glandulosa_TUFC34008' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Exidiopsis_calcea' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Exidiopsis_sp' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Exidiopsis grisea_TUFC100049' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Exidia_crenata' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Auricularia polytricha_TUFC12920' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Auricularia polytricha_TUFC12867' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Auricularia polytricha_HN4076' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Auricularia_mesenterica' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Heterochaete_delicata' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Protodaedalea foliacea_Yuan5691' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Protodaedalea foliacea_E701' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Protodaedalea foliace_WD548' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Pseudohydnum_gelatinosum' catctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaatt 'Heterochaetella_brachyspora' catctaaagctaaatataggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaatt 'Protomerulius_africanus' catctaaagctaaataccggcgggagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaatt 'Protomerulius_brasiliensis' catctaaagctaaataccggcgggagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaatt 'Basidiodendron_eyrei' cttctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaatt 'Tremella_foliacea' catctaaggctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaatt 'Aporpium strigosum_WD680' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttcccggtagatgggccagcgtcgattttggtc 'Aporpium strigosum_TFM_F_27651' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttcccggtagatgggccagcgtcgattttggtc 'Aporpium strigosum_TUFC14542' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttcccggtagatgggccagcgtcgattttggtc 'Aporpium strigosum_WD1710' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttcccggtagatgggccagcgtcgattttggtc 'Aporpium strigosum_Wei5621' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcgattttggtc 'Aporpium strigosum_TUFC10589' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcgattttggtc 'Aporpium strigosum_Wei5990' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcgattttggtc 'Aporpium caryae_WD2274' gttgaaagggaaacgcttgaagtcagtcgcgtctgtcgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcaattttggtt 'Aporpium caryae_Dai 3952' gttgaaagggaaacgcttgaagtcagtcgcgtctgtcgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcaattttggtt 'Aporpium caryae_Dai 4549' gttgaaagggaaacgcttgaagtcagtcgcgtctgtcgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcaattttggtt 'Aporpium caryae_WD2207' gttgaaagggaaacgcttgaagtcagtcgcgtctgtcgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcaattttggtt 'Aporpium hexagonoides_ML297' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcaaccttgcttctgcttggtgcaattctcggtagatgggccagcatcgattttggtc 'Aporpium hexagonoides_Wei5584' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcaaccttgcttctgcttggtgcaattcttggtagatgggccagcatcgattttggtc 'Aporpium hexagonoides_Wei5680' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcaaccttgcttctgcttggtgcaattcttggtagatgggccagcatcgattttggtc 'Aporpium hexagonoides_TFM_F_27498' gttgaaagggaaacgcttgaagtcagtcgcgtctgcagggactcaaccttgcttctgcttggtgcaattctcggtagatgggccagcatcgattttggtc 'Aporpium_efibulata' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcgattttggtc 'Aporpium dimidiata_O18238' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcgattttggtt 'Aporpium dimidiata_O18261' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttctgcttggtgcacttctcggtagatgggccagcatcgattttggtt 'Exidia glandulosa_TUFC34008' gttgaaagggaaacgcttgaagtcagtcgcgtctgccgggactcagccttgcttttgcttggtgcacttctcggtggatgggccagcatcgattttgatc 'Exidiopsis_calcea' gttgaaagggaaacgcttgaagtcagtcgcgtctgccaggactcagccttgcttctgcttggtgcacttcttggtggatgggccagcatcgattttgatc 'Exidiopsis_sp' gttgaaagggaaacgcttgaagtcagtcgcgtttgccgggactcagctttgcttttgcttggtgcacttcccggtggatgggccagcatcgattttggtc 'Exidiopsis grisea_TUFC100049' gttgaaagggaaacgcttgaagtcagtcgcgtctgtcaggactcagccttgcttttgcttggtgcacttcctggtggatgggccagcatcgattttgatc 'Exidia_crenata' gttgaaagggaaacgcttggagtcagtcgcgtttgccaggactcagccttgcttctgcttggtgcacttcctggtgaatgggccagcatcgattttggtc 'Auricularia polytricha_TUFC12920' gttgaaagggaaacgcttgaagtcagtcgcgtctgccaggactcagccttgcttctgcttggtgcacttcttggtggatgggccagcatcgattttgatt 'Auricularia polytricha_TUFC12867' gttgaaagggaaacgcttgaagtcagtcgcgtctgccaggactcagccttgcttctgcttggtgcatttcttggtggatgggccagcatcgattttgatt 'Auricularia polytricha_HN4076' gttgaaagggaaacgcttgaagtcagtcgcgtctgccaggactcagccttgcttctgcttggtgcatttcttggtggatgggccagcatcgattttgatt 'Auricularia_mesenterica' gttgaaagggaaacgcttgaagtcagtcgcgtccgccgggactcagccttgcttctgcttggtgcacttctcggtggatgggccagcatcgattttggcc 'Heterochaete_delicata' gttgaaagggaaacgcttgaagtcagtcgcgtccgcagggactcagccttgcttttgcttggtgtacttctctgtggatgggccagcatcgattttagtc 'Protodaedalea foliacea_Yuan5691' gttgaaagggaaacgcttgaagtcagtcgcgtccgccgggactcaacctcgcttttgccgggtgcacttctcggcggacgggccagcatcgattttggtc 'Protodaedalea foliacea_E701' gttgaaagggaaacgcttgaagtcagtcgcgtccgccgggactcagccttgcttttgctgggtgcacttctcggcggacgggccagcatcgacttcggtc 'Protodaedalea foliace_WD548' gttgaaagggaaacgcttgaagtcagtcgcgtccgccgggactcagcctcgcttttgctgggtgcacttctcggcggacgggccagcatcgatttcggtc 'Pseudohydnum_gelatinosum' gttgaaagggaaacgcttggagtcagtcgcgtttgccgggactcagccttgcttctgcttggtgcacttcctggtacacgggccagcatcgattttgatc 'Heterochaetella_brachyspora' gttgaaagggaaacgcttggagtcagtcgcgtccgccgggactcagccgggcttttgcttggtgcacttctcggtggatgggccagcatcgatttcggtt 'Protomerulius_africanus' gttgaaagggaaacgcttggagtcagtcgcgtccgtcgggattcagccgggcttttgtccggcgcacttctcggtggatgggccagcatcgattttggct 'Protomerulius_brasiliensis' gttgaaagggaaacgcttggagtcagtcgcgtccgtcgggattcagccgggcttttgtccggcgcatttctcggtggatgggccagcatcgattttggct 'Basidiodendron_eyrei' gctcatagggaaacgcttgaagtcagtcgtctcggctgggactcagcccgggttctcctgggtgcacttcctagtcgaggggccagcgtcagtttcgagc 'Tremella_foliacea' gttgaaagggaaacgattgaagtcagtcgtgtccg-aggggttcagccggtcct---gccggtgcattcctc-tcggacgggtcaacatcggttttgtcc 'Aporpium strigosum_WD680' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagccttctatcgtacacggtgactgggatcgaggac 'Aporpium strigosum_TFM_F_27651' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagccttctatcgtacacggtgactgggatcgaggac 'Aporpium strigosum_TUFC14542' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagccttctatcgtacacggtgactgggatcgaggac 'Aporpium strigosum_WD1710' gccggaaaagggtgggagg-aatgtggcagc----tcgctgtgttatagccttctatcgtacacggtgactgggatcgaggac 'Aporpium strigosum_Wei5621' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagccttctatcgtacacggtgactgggatcgaggac 'Aporpium strigosum_TUFC10589' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagccttctatcgtacacggtgactgggatcgaggac 'Aporpium strigosum_Wei5990' gccggaaaagggtgggRgg-aatgtggcagc----ttgctgtgttatagccttctatcgtacacggtgactgggatcgaggac 'Aporpium caryae_WD2274' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctatcgtacacggtgactgggattgaggac 'Aporpium caryae_Dai 3952' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctatcgtacacggtgactgggattgaggac 'Aporpium caryae_Dai 4549' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctatcgtacacggtgactgggattgaggac 'Aporpium caryae_WD2207' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctatcgtacacggtgactgggattgaggac 'Aporpium hexagonoides_ML297' gccggaaaagggtgagagg-aatgtggcagc----ttgctgtgttatagcctcttatcgtacacggtgactgggatcgaggac 'Aporpium hexagonoides_Wei5584' gccggaaaagggtgagagg-aatgtggcagc----ttgctgtgttatagcctcttatcgtacacggtgactgggatcgaggac 'Aporpium hexagonoides_Wei5680' gccggaaaagggtgagagg-aatgtggcagc----ttgctgtgttatagcctcttatcgtacacggtgactgggatcgaggac 'Aporpium hexagonoides_TFM_F_27498' gccggaaaagggtgagagg-aatgtggcagc----ttgctgtgttatagcctcttatcgtacacggtgactgggatcgaggac 'Aporpium_efibulata' gtcggaaaagggcgggagg-aatgtggcagc----ttgctgtgttatagcctctcgtcgtacacgatgactgggatcgaggac 'Aporpium dimidiata_O18238' gccggaaaagggcgggagg-aatgtggcagc----ttgctgtgttatagcctctcgtcgtacacggtgactgggatcgaggac 'Aporpium dimidiata_O18261' gccggaaaagggcgggagg-aatgtggcagc----ttgctgtgttatagcctctcgtcgtacacggtgactgggatcgaggac 'Exidia glandulosa_TUFC34008' gccggaaaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctatcgtacacggtggttgggatcgaggat 'Exidiopsis_calcea' gccggagaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctgtcgtacacggtggttgggatcgaggac 'Exidiopsis_sp' gccggagaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctatcgtacacggtgattgggatcgaggac 'Exidiopsis grisea_TUFC100049' gccggagaagggtgggagg-aatgtggcagc----ttgctgtgttatagcctcctatcgtacacggtgattgggatcgaggac 'Exidia_crenata' gccggaaaagggcgggagg-aatgtggcagc----ttgctgtgttatagccttccgtcgtacacggtgtctgggatcgaggac 'Auricularia polytricha_TUFC12920' gccggaaaagggcgggagg-aatgtggcagc--ttttgctgtgttatagccttctgtcgtacacggtggttgggatcgaggac 'Auricularia polytricha_TUFC12867' gccggaaaagggcgggagg-aatgtggcagc--ttttgctgtgttatagccttccgtcgtacacggtggttgggatcgaggac 'Auricularia polytricha_HN4076' gccggaaaagggcgggagg-aatgtggcagc--ttttgctgtgttatagccttccgtcgtacacggtggttgggatcgaggac 'Auricularia_mesenterica' gccggaaaagggcgggagg-aatgtggcagct-ttttgctgtgttatagcctcccgtcgtacacggtggccgggatcgaggaa 'Heterochaete_delicata' gccggaaaagggcgggagg-aatgtggcagc----ttgctgtgttatagcctctcgtcgtacacggtggccgggatcgaggac 'Protodaedalea foliacea_Yuan5691' gccggaaaaggacgggagg-aatgtggcagctttttagttgtgttatagactctcgttgtacacggtggccgggatcgaggac 'Protodaedalea foliacea_E701' gccggaaaaggacgggagggaatgtggcagct-tttagctgtgttatagactctcgtcgcacacggtggctgggatcgaggac 'Protodaedalea foliace_WD548' gccggaaaaggacgggaggaaatgtggcagc--tttggctgtgttatagactctcgtcgcacacggtggccgggatcgaggac 'Pseudohydnum_gelatinosum' gccggaaaaaggcttgggg-aaggtggcacc--ttcgggtgtgttatagccccttgttgtatacggtggttgggattgaggac 'Heterochaetella_brachyspora' gccggacaagggcaagggg-aatgtggcacc--ttcgggtgtgttatagcccctcgtcgtatacggtggctgggatcgaggtt 'Protomerulius_africanus' gccggaaaagggccagagg-aatgtggcacc--ctcgggtgtgttatagcctctggtcgcacacggtggccgggatcgaggac 'Protomerulius_brasiliensis' gccggaaaagggccagagg-aatgtggcacc--ctcgggtgtgttatagcctctggtcgcacacggtggcYgggatcgaggac 'Basidiodendron_eyrei' gcggaagaagggcgtgagg-aatgtggcacc--ctcgggtgtgttatagcctcgcgtcggacgccgtgcttgggactgaggac 'Tremella_foliacea' ggcggaaaagggcgtgagg-aatgtggcacc--tccgggtgtgttatagccttgcgtcgcatacgtcggtcgagaccgaggaa ; END; BEGIN TREES; Title 'Trees from "mesrevisemplsuelmerinadaikanawazaTreebase.trees"'; LINK Taxa = Taxa; TRANSLATE 1 'Aporpium strigosum_WD680', 2 'Aporpium strigosum_TFM_F_27651', 3 'Aporpium strigosum_TUFC14542', 4 'Aporpium strigosum_WD1710', 5 'Aporpium strigosum_Wei5621', 6 'Aporpium strigosum_TUFC10589', 7 'Aporpium strigosum_Wei5990', 8 'Aporpium caryae_WD2274', 9 'Aporpium caryae_Dai 3952', 10 'Aporpium caryae_Dai 4549', 11 'Aporpium caryae_WD2207', 12 'Aporpium hexagonoides_ML297', 13 'Aporpium hexagonoides_Wei5584', 14 'Aporpium hexagonoides_Wei5680', 15 'Aporpium hexagonoides_TFM_F_27498', 16 'Aporpium_efibulata', 17 'Aporpium dimidiata_O18238', 18 'Aporpium dimidiata_O18261', 19 'Exidia glandulosa_TUFC34008', 20 'Exidiopsis_calcea', 21 'Exidiopsis_sp', 22 'Exidiopsis grisea_TUFC100049', 23 'Exidia_crenata', 24 'Auricularia polytricha_TUFC12920', 25 'Auricularia polytricha_TUFC12867', 26 'Auricularia polytricha_HN4076', 27 'Auricularia_mesenterica', 28 'Heterochaete_delicata', 29 'Protodaedalea foliacea_Yuan5691', 30 'Protodaedalea foliacea_E701', 31 'Protodaedalea foliace_WD548', 32 'Pseudohydnum_gelatinosum', 33 'Heterochaetella_brachyspora', 34 'Protomerulius_africanus', 35 'Protomerulius_brasiliensis', 36 'Basidiodendron_eyrei', 37 'Tremella_foliacea'; TREE PAUP_1 = (36,37,(32,(((((((5,6,7,(1,2,3,4)),(8,9,10,11)),(12,15,(13,14))),(16,(17,18))),((20,(19,(21,22))),(27,(23,(26,(24,25)))))),(28,(29,(30,31)))),(33,(34,35))))); TREE PAUP_2 = (36,37,(32,(((((((5,6,7,(1,2,3,4)),(8,9,10,11)),(12,15,(13,14))),(16,(17,18))),(27,(23,((20,(19,(21,22))),(26,(24,25)))))),(28,(29,(30,31)))),(33,(34,35))))); TREE PAUP_3 = (36,37,(32,(((((((5,6,7,(1,2,3,4)),(8,9,10,11)),(12,15,(13,14))),(16,(17,18))),(27,(23,(26,(25,(24,(19,(20,(21,22))))))))),(28,(29,(30,31)))),(33,(34,35))))); TREE PAUP_4 = (36,37,(32,(((((((5,6,7,(1,2,3,4)),(8,9,10,11)),(12,15,(13,14))),(16,(17,18))),(27,(23,((20,(22,(19,21))),(26,(24,25)))))),(28,(29,(30,31)))),(33,(34,35))))); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 483; END; BEGIN TREES; Title 'Trees from "lsumestreebase.nex"'; LINK Taxa = Taxa; TRANSLATE 1 'Aporpium strigosum_WD680', 2 'Aporpium strigosum_TFM_F_27651', 3 'Aporpium strigosum_TUFC14542', 4 'Aporpium strigosum_WD1710', 5 'Aporpium strigosum_Wei5621', 6 'Aporpium strigosum_TUFC10589', 7 'Aporpium strigosum_Wei5990', 14 'Aporpium caryae_WD2274', 13 'Aporpium caryae_Dai 3952', 15 'Aporpium caryae_Dai 4549', 12 'Aporpium caryae_WD2207', 9 'Aporpium hexagonoides_ML297', 10 'Aporpium hexagonoides_Wei5584', 11 'Aporpium hexagonoides_Wei5680', 8 'Aporpium hexagonoides_TFM_F_27498', 16 'Aporpium_efibulata', 17 'Aporpium dimidiata_O18238', 18 'Aporpium dimidiata_O18261', 21 'Exidia glandulosa_TUFC34008', 22 'Exidiopsis_calcea', 19 'Exidiopsis_sp', 20 'Exidiopsis grisea_TUFC100049', 23 'Exidia_crenata', 25 'Auricularia polytricha_TUFC12920', 26 'Auricularia polytricha_TUFC12867', 24 'Auricularia polytricha_HN4076', 27 'Auricularia_mesenterica', 28 'Heterochaete_delicata', 29 'Protodaedalea foliacea_Yuan5691', 30 'Protodaedalea foliacea_E701', 31 'Protodaedalea foliace_WD548', 32 'Pseudohydnum_gelatinosum', 33 'Heterochaetella_brachyspora', 34 'Protomerulius_africanus', 35 'Protomerulius_brasiliensis', 37 'Basidiodendron_eyrei', 36 'Tremella_foliacea'; TREE PHYLIP_1 = (36,(((32,((28,(27,((((((4,(3,(1,2))),(5,(6,7))),(8,(9,(10,11)))),(12,(13,(14,15)))),(16,(17,18))),((22,(21,(19,20))),(23,(24,(25,26))))))),(29,(30,31)))),(33,(34,35))),37)); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 483; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 483; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1392857062849; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6328700754597455922; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3306938253885988867; mqVersion 275; checksumv 0 3 2144772644 null getNumChars 483 numChars 483 getNumTaxa 37 numTaxa 37 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 372924.0 sumSquares -2.375248883791026E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 548; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 948; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6328700754597455922 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; toggleUseWeights off; endTell; setAssignedID 874.1392851488225.5406952416694379630; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1132 881; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3306938253885988867 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 371; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1132 881; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;