#NEXUS [written Fri Nov 15 11:59:15 PST 2013 by Mesquite version 2.75 (build 564) at ESM-SB1-321-S7/131.252.126.116] BEGIN TAXA; TITLE LCRB_native_fishes; DIMENSIONS NTAX=13; TAXLABELS Poeciliopsis_occidentalis Cyprinodon_macularius Xyrauchen_texanus Catostomus_plebeius Lepidomeda_mollispinis Lepidomeda_vittata Plagogterus_argentissimus Meda_fulgida Gila_cypha Gila_robusta Rhinichthys_osculus Agosia_chrysogaster Oncorhynchus_mykiss ; END; BEGIN CHARACTERS; TITLE LCRB_native_fishes_cytb_sequences; LINK TAXA = LCRB_native_fishes; DIMENSIONS NCHAR=1177; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Poeciliopsis_occidentalis ----------ATGGCCAGCCTACGAAAATCACATCCCCTACTAAAAATTGCAAAC-ATGCATTAGTAGATCTTCCCGC Cyprinodon_macularius ----------ATGGCCAACCTACGGAAAACTCACCCCCTCCTAAAAATTGCAAACAACGCACTGGTGGACCTCCCAGC Xyrauchen_texanus ----------ATGGCAAGCCTACGCAAAACGCACCCCCTAATCAAAATTGCAAACGACGCATTAGTTGACCTACCAAC Catostomus_plebeius ---------------------------GACGCATCCCCTAATCAAAATTGCAAACGACGCATTAGTTGACCTCCCCAC Lepidomeda_mollispinis ----------ATGGCAAGCCTACGAGAGACTCACCCGCTAATAAAAATCGCTAATGGTGCATTAGTCGATCTCCCTAC Lepidomeda_vittata ----------------AGCCTACGAAAGACTCACCCGCTAATAAAAATCGCTAATGGTGCATTAGTCGATCTCCCCAC Plagogterus_argentissimus ----------ATGGCAAGCCTACGAAAAACCCACCCGCTAATAAAAATCGCTAATAGTGCATTAGTCGACCTTCCCAC Meda_fulgida ----------ATGGCAAGCCTACGAAAAACTCACCCACTAATAAAAATCGCTAACAGTGCATTAGTAGACCTCCCCAC Gila_cypha ----------ATGGCAAGCCTACGAAAAACCCACCCCCTAATAAAAATCGCCAACGATGCACTAGTTGACCTCCCAAC Gila_robusta ----------ATGGCAAGCCTACGAAAAACCCACCCCCTAATAAAAATCGCCAACGATGCACTAGTTGACCTTCCGAC Rhinichthys_osculus ----------ATGGCAAGCCTACGAAAAACCCACCCACTAATAAAAATTGCTAACGATGCACTAGTTGACCTTCCAAC Agosia_chrysogaster ----------ATGGCAAGCCTACGAAAAACCCACCCACTA-TAAAAATTGCTAATGGTGCACTTGTTGACCT-CCAAC Oncorhynchus_mykiss ----------ATGGCCAACCTCCGAAAAACCCACCCTCTCCTAAAAATCGCTAATGACGCACTAGTCGACCTCCCAGC Poeciliopsis_occidentalis TCCTATCAATATCTCCGCCTGATGAAACTTTGGCTCCCTTCTAGGTCTTTGCCTCATTGCCCAAATCCTTACAGGCCT Cyprinodon_macularius ACCAGTAAACATCTCCGCTTGATGAAACTTTGGTTCCCTTCTAGGACTATGTCTAATTGCCCAAGTCTTAACGGGGCT Xyrauchen_texanus CCCATCCAACATCTCAGTATGATGGAATTTTGGATCCCTACTAGGCCTTTGTCTCATTACCCAAATCCTGACGGGACT Catostomus_plebeius CCCGTCCAACATCTCAGTATGATGAAATTTCGGGTCTCTACTAGGCCTTTGTCTCATTACCCAGGTCCTGACGGGACT Lepidomeda_mollispinis ACCATCTAACATTTCAGCACTCTGAGACTTCGGATCCCTCCTAGGGCTCTGTTTAATTACCCAAATCCTAACGGGATT Lepidomeda_vittata ACCATCTAACATTTCAGCACTCTGAAACTTCGGATCCCTTCTAGGGCTCTGTTTAATTACCCAAATCCTAACAGGGTT Plagogterus_argentissimus ACCATCTAATATTTCAGCACTTTGGAACTTCGGATCCCTCCTAGGACTTTGCTTGATTGCTCAGCTTCTGACCGGGTT Meda_fulgida ACCGTCTAACATTTCAGCACTCTGAAACTTCGG-TCCCTCTT-GGGCTGTGCTTAAT-GCCCAGCTCCTGACAGGACT Gila_cypha ACCATCTAATATTTCAGTGATATGAAACTTTGGATCCCTCCTAGGATTATGTTTAATTACCCAAATTCTGACAGGGCT Gila_robusta ACCATCTAATATTTCGGTAATATGAAACTTTGGATCCCTCCTAGGATTATGTTTAATTACTCAAATTTTAACAGGATT Rhinichthys_osculus CCCATCTAATATTTCAGCACTATGGAACTTCGGATCCCTCCTAGGATTATGCTTAATTACTCAAATCCTAACAGGACT Agosia_chrysogaster ACC-TCAAACATTTCAGCAAT-TGAAACTTTGGATCCCTGCTAGGGTT-TGCTTAATTACCCAATTCT--ACCGGA-T Oncorhynchus_mykiss ACCTTCTAATATCTCAGTCTGATGAAACTTTGGCTCACTACTAGGCCTATGTTTAGCTACCCAAATTCTTACCGGGCT Poeciliopsis_occidentalis GTTTTTAGCAATGCACTACACCTCTGATATCTCTACAGCATTTTCATCCGTAGCCCATATCTGCCGAGATGT-AACTA Cyprinodon_macularius ATTTTTGGCAATGCACTATACATCAGACATTTCTACCGCTTTCTCATCCGTTGCTCACATTTGCCGCGACGTTAATTA Xyrauchen_texanus ATTCCTAGCGATACACTATACCTCTGACATCTCAACCGCCTTCTCTTCCGTTGCCCACATCTGCCGAGACGTAAGCTA Catostomus_plebeius ATTCCTAGCAATGCACTATACCTCTGACATCTCAACCGCCTTCTCTTCTGTTGCCCACATCTGCCGGGACGTGAGTTA Lepidomeda_mollispinis ATTCCTAGCCATACACTACACCTCTGATATTTCAACCGCATTTTCATCGGTCACCCATATCTGCCGGGACGTTAATTA Lepidomeda_vittata ATTTCTAGCCATACACTACACCTCTGATATTTCAACTGCGTTTTCATCAGTCACCCATATCTGCCGAGACGTTAATTA Plagogterus_argentissimus GTTTCTGGCTATACACTATGCCTCTGATATTTCAACTGCATTCTCATCAGTCGCTCACATCTGCCGGGATGTTAATTA Meda_fulgida ATTCCTTGCTATGCACTATGCCTCTGATATTTCAACTGCATTTTCATCGGTAGCCCACATCTGCCGGGACGTTAAT-A Gila_cypha ATTTTTAGCCATGCACTATACCTCTGACATCTCAACCGCATTTTCATCAGTGACCCACATCTGCCGAGACGTTAACTA Gila_robusta ATTTTTAGCCATACACTATACCTCTGACATCTCAACCGCATTCTCATCAGTAACCCATATCTGCCGAGACGTTAACTA Rhinichthys_osculus ATTCCTGGCCATACATTATACTTCCGATATCTCAACTGCCTTTTCATCAGTAACACACATCTGCCGAGACGTTAACTA Agosia_chrysogaster ATTTCTAGCCAT-CATTACACCTCCGACATCTCAACCGCCTTTTCATCTGTTAC-CACATTTGCCGAGATGT-AACTA Oncorhynchus_mykiss CTTCCTAGCCATGCACTATACCTCCGACATTTCAACAGCTTTCTCCTCTGTTTGCCACATCTGCCGAGATGTTAGTTA Poeciliopsis_occidentalis CGGCTGACTTATC-GAAACATACATGCCAACGGAGCCTCCTTCTTTTTTATCTGCATCTATCTTCACATCGGACGGGG Cyprinodon_macularius TGGCTGACTCATCCGAAACATGCATGCTAATGGAGCATCTTTCTTCTTTATCTGTATTTACCTGCATATCGGTCGAGG Xyrauchen_texanus TGGGTGACTAATCCGTAGTGTACATGCTAATGGAGCATCATTCTTCTTCATTTGCATTTACATACATATTGCCCGAGG Catostomus_plebeius CGGGTGACTGATCCGTAGCGTACATGCTAATGGAGCATCGTTCTTCTTCATTTGCATTTATATGCATATTGCCCGAGG Lepidomeda_mollispinis CGGCTGACTTATCCGAAACCTACATGCCAACGGCGCATCCTTCTTCTTTATCTGTATTTACATACACATCGCCCGAGG Lepidomeda_vittata CGGCTGACTTATCCGAAACCTACATGCCAACGGCGCATCCTTCTTCTTCATCTGTATTTATAT-CATATCGCCCGAGG Plagogterus_argentissimus TGGCTGGCTTATCCGGAACCTTCATGCCAACGGTGCATCTTTCTTCTTCATCTGTATCTATATACACATTGCCCGAGG Meda_fulgida CGGCTGGCT-ATTCGGAACCTTCATGCCAACG--GCATCCTTCTTCTTCATCTGTATCTACATACATATCGCCCGCGG Gila_cypha TGGCTGACTTATCCGAAGCCTACATGCTAATGGAGCATCATTCTTCTTCATCTGTATTTATATACATATTGCCCGAGG Gila_robusta TGGCTGACTTATCCGAAGCCTACATGCTAATGGAGCATCATTCTTCTTCATCTGTATTTATATACACATTGCCCGTGG Rhinichthys_osculus TGGCTGACTCATCCGAAACATACATGCTAACGGAGCATCATTCTTCTTTATCTGTATTTATATACACATTGCCCGCGG Agosia_chrysogaster CGGCTGGCTCATCCGAAACAT-CATGCTAACGGCGC-TCATTCTTCTT-ATCTGTATT-ACATACA-ATTGCTCG-GG Oncorhynchus_mykiss CGGCTGACTCATTCGAAACATCCATGCCAACGGAGCATCTTTCTTTTTTATCTGTATTTATATACATATCGCCCGAGG Poeciliopsis_occidentalis TTTATACTACGGCTCGTATCTCTATAAAGAGACATGAAACGTAGGAGTAGTACTGCTATTGCTTGTTATAATAACCGC Cyprinodon_macularius CCTTTATTATGGCTCCTACCTCTACAAAGAAACCTGAAATGTGGGAGTAGTCCTCCTCCTTCTTGTTATAATGACAGC Xyrauchen_texanus ACTATATTATGGGTCATACCTCTATAAAGAAACCTGAAACATTGGTGTTGTTCTCCTCCTATTAGTAATGATAACCGC Catostomus_plebeius ACTATATTATGGCTCATATCTCTATAAAGAGACCTGAAACATCGGTGTCGTGCTCCTCCTCCTGGTAATAATGACTGC Lepidomeda_mollispinis CCTCTATTACGGATCATACCTCTACAAGGAGACCTGAAACATCGGGGTAGTCCTACTCCTTCTAGTTATGATAACAGC Lepidomeda_vittata CCTTTATTACGGGTCATACCTTTATAAGGAGACCTGAAACATCGGGGTGGTTCTACTCCTTCTAGTTATGATGACAGC Plagogterus_argentissimus CCTCTACTACGGTTCCTACCTTTATAAAGAGACCTGAAATATTGGGGTTGTCCTGCTCCTTCTAGTTATGATAACAGC Meda_fulgida CCTATACTACGGCTCTTACCTCTACAAGGAAACCTGAA-TATTGGAGTAATCCTTCTCCTGCTGGTTATGATGACTGC Gila_cypha CCTATACTATGGGTCATACCTTTATAAAGAGACCTGAAATATTGGTGTAGTCCTACTCCTTTTAGTTATAATAACCGC Gila_robusta CTTATACTACGGGTCATACCTTTATAAGGAGACCTGAAATATTGGCGTAGTCCTACTACTTTTAGTTATAATAACCGC Rhinichthys_osculus GCTGTACTATGGGTCATACCTCTATAAAGAGACCTGAAATATTGGCGTAGTTCTACTCCTTTTAGTCATGATGACAGC Agosia_chrysogaster CCTCTACTATGG-TCTTATCTTTATAAAGAAACCTGAAAT---GGAGTCGTGCTACTTCTTCTGGT-AT-ATGACAGC Oncorhynchus_mykiss ACTTTACTACGGCTCGTACCTCTACAAAGAAACCTGGAATATCGGAGTTGTACTTTTACTTCTCACTATAATAACTGC Poeciliopsis_occidentalis CTTCGTCGGATACGTTCTTCCATGAGGACAGATATCCTTCTGAGGAGCTACCGTAATTACCAAC-TGCTTTCCGCTGT Cyprinodon_macularius CTTCGTTGGGTACGTTTTACCCTGAGGACAAATGTCATTTTGAGGTGCTACAGTAATTACCAACCTCCTATCCGCTGT Xyrauchen_texanus CTTTGTCGGGTATGTACTCCCATGAGGACAGATATCATTCTGAGGTGCTACAGTAATTACCAATCTTCTATCCGCAGT Catostomus_plebeius CTTCGTCGGATATGTCCTTCCATGGGGACAAATGTCATTCTGAGGTGCCACAGTAATTACTAACCTTTTATCCGCAGT Lepidomeda_mollispinis CTTTGTGGGCTATGTGCTTCCATGAGGGCAAATGTCTTTTTGAGGTGCCACAGTAATCACGAACCTGTTATCAGCAGT Lepidomeda_vittata CTTTGTGGGCTATGTACTTCCATGGGGCCAAATATCTTTTTGAGGGGCCACAGTAATCACGAACCTACTGTCGGCAGT Plagogterus_argentissimus CTTTGTGGGCTATGTCCTTCCATGGGGACAGATGTCCTTTTGAGGTGCCACGGTGATTACAAACCTACTGTCGGCAGT Meda_fulgida CTTTGTAGGCTATGTTCTTCCCTGGGGACAGATATCTTTTTGGGGTGCCACG-TGATTACAA-TTTACTATCAGCAGT Gila_cypha CTTCGTCGGCTATGTACTTCCATGGGGCCAAATATCGTTTTGAGGCGCCACAGTAATTACAAACTTGTTATCAGCAGT Gila_robusta CTTCGTCGGCTATGTACTTCCATGGGGCCAAATATCTTTTTGAGGCGCTACAGTAATCACAAACTTACTATCGGCGGT Rhinichthys_osculus CTTTGTAGGCTATGTGCTGCCGTGAGG-CAAATATCTTTTTGAGGTGCCACCGTAATTACAAATCTACTATCAGCAGT Agosia_chrysogaster CTTTGT-GGCTA-GT-CTTCCATGGGG-CAA---TTCTTCTGAGGGGCCACGGTTATTACAATTCT----TCTGCAGT Oncorhynchus_mykiss CTTTGTAGGCTACGTCCTCCCGTGAGGACAAATATCATTCTGAGGGGCCACTGTAATTACAAACCTCCTCTCAGCTGT Poeciliopsis_occidentalis ACCTTACATAGGCGACACCCTCGTTCAATGAATCTGAGGTGGGTTCTCAGTAGACAACGCCACCCTAACCCGCTTCTT Cyprinodon_macularius CCCTTACGTCGGGGATGCCCTCGTACAATGAATTTGAGGTGGATTTTCAGTTGACAACGCAACTTTAACCCGATTCTT Xyrauchen_texanus CCCTTATGTGGGGAATGAGCTAGTCCAATGAATCTGAGGGGGATTCTCAATAGATAACGCAACCCTAACACGATTCTT Catostomus_plebeius CCCTTATGTTGGCAATGAGTTAGTTCAATGAATTTGAGGTGGATTTTCAGTAGATAATGCAACGCTAACACGGTTCTT Lepidomeda_mollispinis CCCTTACATGGGCGACACCCTTGTTCAGTGAATTTGAGGCGGGTTCTCAGTAGATAACGCGACTCTTACACGGTTCTT Lepidomeda_vittata CCCTTATATGGGCGATACCCTTGTTCAGTGGATTTGGGGCGGGTTCTCAGTAGATAACGCAACTCTTACACGGTTCTT Plagogterus_argentissimus CCCTTATATGGGCGACACCCTTGTTCAATGAATTTGAGGTGGCTTCTCAGTAGATAACGCAACTCTCACGCGGTTCTT Meda_fulgida CC-TTACATAGGAGACACCCTTGTTCA-TGGATTTG-GGCGGCTTCTCGG-AGATAACGCCACTCTTAC-CGGTTCTT Gila_cypha GCCATACATAGGGGACACCCTTGTTCAGTGAATCTGAGGGGGCTTCTCGGTAGACAACGCAACACTGACGCGATTCTT Gila_robusta GCCCTATATAGGAGACACCCTTGTTCAATGAATCTGAGGGGGCTTCTCTGTAGACAACGCAACATTAACGCGATTCTT Rhinichthys_osculus CCCT-ATATGGGCGACGCCCTTGTCCAGTGGATTTGAGGTGGCTTTTCCGTAGATAACGCAACGTTAACACGATTCTT Agosia_chrysogaster ACCT-ACATGG-CGACACCCTTGTC--ATGAATTTGGGG-GGCTTCTCAGTAGATAACGCGACGTTAACACGGTTCTT Oncorhynchus_mykiss ACCCTACGTAGGAGGCGCCCTAGTACAATGAATTTGAGGGGGCTTCTCCGTTGACAACGCCACTCTAACACGATTTTT Poeciliopsis_occidentalis TGCCTTCCACTTCCTCCTACCCTTCATTGTTGCAGC-GCAACTTTAGTCCACCTCATTTTTTTACATGAAACTGGTTC Cyprinodon_macularius TGCCTTCCACTTCCTCCTTCCATTTGTAGTAGCTGCCGCTACTATAGTCCACCTAGTTTTCCTCCACGAAACTGGATC Xyrauchen_texanus TGCCTTCCACTTCCTACTGCCCTTTGTAGTCGCCGCAGCAACTATCATTCACCTTCTTTTCCTGCACGAAACAGGATC Catostomus_plebeius CGCCTTCCACTTCCTACTACCATTTGTAGTCGCTGCAGCAACCGTCATTCACCTTCTTTTTCTGCACGAAACAGGGTC Lepidomeda_mollispinis CGCGTTCCACTTCCTCCTTCCATTCGTCATCGCCGGCGCAACCCTCCTCCATTTACTATTTTTACACGAAACGGGGTC Lepidomeda_vittata CGCGTTCCACTTTCTCCTCCCATTCGTCATCGCCGGTGCAACCCTCCTGCATTTACTATTTTTACACGAAACGGGGTC Plagogterus_argentissimus CGCATTCCACTTCCTCCTCCCGTTTGTTATCGTCGCCGCGACCCTTGTTCACTTATTGTTCTTACACGAGACGGGGTC Meda_fulgida CGCGTTCCACTTCCTCCTCCCGTTTGTCATCGTCGCCGCGACCCTTATGCACCTGTTTTTCTT-CACGAAACGGGGTC Gila_cypha CGCCTTCCACTTCCTCCTGCCTTTTGTTATCGCCGGCGCAACCATTCTACACTTACTATTTCTACACGAAACCGGATC Gila_robusta CGCCTTCCACTTCCTCCTGCCTTTTGTTATCGCCGGCGCAACCATCTTACACTTACTGTTTCTACACGAAACCGGGTC Rhinichthys_osculus CGCCTTCCACTTCCT-TTTCCGTTCGTTATCGCCGGTGCAACAGTCCTGCATTTGCTATTTTTACACGAAACGGGATC Agosia_chrysogaster CGCCTTC-ACTTCCT-ATTCCCATTGTCATCGCCGGTGCAACTGTTCTCCACTTGTTGTTTCT-CACGAA-CGGGGTC Oncorhynchus_mykiss CGCCTTTCACTTCCTATTCCCCTTCGTCATTGCAGCCGCTACGGTCCTTCACCTTCTGTTCCTTCATGAAACAGGATC Poeciliopsis_occidentalis CAATAACCCCACTGGCCTAAACTCTGATGCAGACAAAATCTCCTTCCACCC-TACTTCTCCTATAAAGATATTTTGGG Cyprinodon_macularius CAACAACCCAACAGGACTCAATTCGGACGCTGATAAAATCTCCTTCCACCCCTATTTCTCATATAAAGACCTGTTAGG Xyrauchen_texanus CAATAATCCAGCAGGAATCAACTCAGACGCGGACAAAATCTCTTTCCACCCCTACTTTTCATACAAGGATCTCCTGGG Catostomus_plebeius CAACAATCCAGCAGGGATCAACTCAGATGCAGACAAGATCTCTTTCCACCCTTACTTCTCATACAAAGACCTCCTCGG Lepidomeda_mollispinis CAACAACCCGGCCGGACTGAACTCTGACGCCGACAAAATCTCTTTCCACCCGTACTTCTCATATAAAGACCTCCTTGG Lepidomeda_vittata CAACAACCCAGCCGGACTAAACTCTGACGCCGACAAGATTTCTTTCCACCCGTACTTCTCATACAAAGACCTCCTTGG Plagogterus_argentissimus CAACAACCCGGCGGGGCTAAACTCCGACGCGGACAAAGTTTCTTTCCACCCATACTTCTCATACAAAGACCTCCTTGG Meda_fulgida TAACAACCCAGCCGGACTAAACTC-GACGCAGACAAAGTTTCTTTCCACCCGTACTTCTCGTACAAGGACCTCCT-GG Gila_cypha AAACAACCCGGCCGGACTAAACTCTGATGCGGATAAAATTTCCTTCCACCCATACTTTTCATACAAAGACCTTCTTGG Gila_robusta AAACAACCCGGCCGGACTAAACTCTGATGCGGATAAGATCTCCTTCCATCCATACTTTTCATACAAAGACCTCCTTGG Rhinichthys_osculus AAACAACCCTGCCGGATTAAACTCCGACGCGGATAAAATCTCTTTCCACCCATACTTCTCATACAAGGACCTCCTTGG Agosia_chrysogaster AA-CAACCCTGCCGG--TAAACTCCGACGCAGATAAA-TCTCTTTCCACCCATATTTCTCATACAAAGACCTTCTGG- Oncorhynchus_mykiss TAATAACCCTGCAGGGATTAACTCTGATGCTGATAAAATCTCATTCCACCCTTACTTCTCATACAAAGATCTCCTAGG Poeciliopsis_occidentalis TTTTACCTTTCTACTTACTGCACTAATTGCCCTAGCCCTATTTTCCCCTAACCTGCTTGGAGACCCAGAGAACTTCAC Cyprinodon_macularius GTTCGCCCTTCTTCTAGCTGCCCTGATTGCACTCGCACTATTCTCACCCAACCTTCTAGGAGACCCGGAAAACTTCAC Xyrauchen_texanus TTTCGCAGCCATGCTATTAGCCCTCACCTCCCTCGCGCTATTTTCACCCAACCTACTAGGAGATCCAGACAATTTTAC Catostomus_plebeius CTTCGCAGCCATGCTATTGGCCCTTACGTCCCTAGCGCTATTTTCACCTAATCTCCTAGGGGACCCGGACAATTTTAC Lepidomeda_mollispinis CTTTGTCGTAATGTTATTAGCTCTCACATCCCTGGCGCTGTTTTCCCCAAATCTGCTAGGCGATCCGGACAACTTTAC Lepidomeda_vittata CTTTGTCGTAATATTATTAGCTCTTACGTCCCTGGCGCTGTTTTCCCCAAATCTCCTGGGTGACCCAGACAACTTTAC Plagogterus_argentissimus CTTTATCGTAATGTTGCTGGCTCTCACATCTCTCGCGCTGTTCTCCCCTAATCTCCTCGGCGACCCGGACAACTTCAC Meda_fulgida CTTTATCGTGAT-TTACTGGCT--AACATCCCTTGCCCTGTTTTCCCCGAACCTGCTTGGCGATCCG-ATAACTTCAC Gila_cypha CTTCGTGCTAATACTATTAGCCCTCACATCTTTAGCACTATTTTCTCCCAACCTATTAGGTGACTCAGAAAATTTTAT Gila_robusta CTTCGTGCTAATACTATTAGCCCTTACGTCACTAGCATTATTCTCTCCCAACCTGCTGGGTGACTCAGAAAATTTTAT Rhinichthys_osculus CTTTGTACTAATGTTATTAGCTCTCACATCCCTGACATTATTCTCCCCAACACTGCTCGGCGACCCAGAAAATTTCAC Agosia_chrysogaster -TTCGTATTAAT-CTGTTAGCTCTCA--TCCCT-ACGTTATTCTCTCCAC--CTACTCGGTGACC--GAGAATTTCAC Oncorhynchus_mykiss ATTCGTAGCCATACTCCTAGGCCTAACATCCTTAGCTCTTTTTGCACCAAATCTCCTAGGGGACCCAGACAATTTTAC Poeciliopsis_occidentalis CCCCGCTAACCCACTTGTTACCCCTCCACACATTAAGCCCGAATGATATTTTCTCTTCGCTTACGCTATCCTTCGTTC Cyprinodon_macularius GCCTGCCAACCCACTGGTGACACCCCCTCACATCAAGCCTGAATGATATTTCCTATTTGCATACGCAATCTTGCGGTC Xyrauchen_texanus CCCCGCAAACCCCCTGGTAACCCCTCCTCATATCAAGCCGGAGTGATATTTTCTGTTTGCCTACGCCATCCTTCGATC Catostomus_plebeius CCCGGCAAATCCCTTGGTAACCCCTCCTCACATTAAGCCAGAGTGGTATTTCTTATTTGCCTACGCCATCCTCCGATC Lepidomeda_mollispinis CCCCGCAAACCCGCTGGTTACCCCTCCACACATCCAGCCCGAGTGATACTTTTTGTTTGCCTATGCTATCCTGCGATC Lepidomeda_vittata CCCTGCAAACCCACTGGTTACCCCTCCGCACATCCAGCCCGAGTGATACTTTTTGTTTGCCTATGCTATTCTACGATC Plagogterus_argentissimus CCCGGCGAACCCGCTGGTCACCCCTCCGCACATCCAGCCGGAGTGGTACTTCCTATTTGCCTACGCCATTCTGCGGTC Meda_fulgida CCCGGCAAACCCGCTAGTTACGCCCCCACACATCCAGCCAGAGTGATACTTCCTGTTTGCCTATGCTATCCTACGATC Gila_cypha CCCGGCAAACCCCCTAGTCACTCCTCCACATATTCAGCCTGAATGATATTTTTTATTTGCCTACGCCATCCTACGATC Gila_robusta TCCTGCAAACCCCCTAGTCACCCCCCCACATATCCAGCCCGAATGATATTTTTTATTTGCTTATGCCATCCTACGATC Rhinichthys_osculus CCCAGCAAACCCCCTGGTTACCCCACCACACATCCAACCGGAGTGATACTTCCTGTTTGCCTACGCCATTCTACGGTC Agosia_chrysogaster CC-AGCAAACCCT---GGTACCCCACCACA-ATCCAACCAGAGTGATACTTCTTGTTTGCCTATGCCATTCTC--GTC Oncorhynchus_mykiss GCCTGCCAACCCCCTAGTGACCCCACCTCATATTAAACCCGAATGATACTTCCTATTCGCTTACGCAATCCTACGATC Poeciliopsis_occidentalis TATTCCTAATAAACTAGGAGGTGTACTTGCCCTCCTCGCCTCCATCCTAGTCTTGATAGTCGTTCCCCTACTCCACAC Cyprinodon_macularius TATCCCTAATAAGCTAGGAGGCGTTCTTGCTCTTCTAGCATCCATCCTCGTCCTCATGGTCGTGCCAATTCTACACAC Xyrauchen_texanus CATTCCCAACAAACTAGGTGGTGTTCTAGCATTATTGTCCTCCATTCTTGTATTGATAGTGGTACCCGTCCTTCACAC Catostomus_plebeius TATTCCTAACAAGCTGGGAGGCGTTTTGGCATTGTTATCCTCTATTCTCGTACTAATGGTAGTGCCCATTATGCACAC Lepidomeda_mollispinis TATTCCAAACAAGCTAGGAGGGGTCCTAGCGCTACTATTTAGTATTCTAGTACTAATAGTAGTTCCAATTCTACACAC Lepidomeda_vittata TATTCCAAACAAACTAGGAGGGGTCCTTGCACTACTCTTTAGTATTCTGGTACTAATAGTAGTCCCGATTCTACACAC Plagogterus_argentissimus TATTCCGAACAAGCTAGGAGGGGTCCTTGCACTATTATTTAGTATTCTAGTGCTGATGCTAGTCCCAATGATACACAC Meda_fulgida TATCCC-AACAAGCTAGG-GGGGTCCTCGCGCTACTCTTTAGTATTCTAGTGCTAATACTAGTCCCACT-ATACACAC Gila_cypha TATTCCAAATAAACTAGGAGGGGTCCTCGCACTATTATTTAGTATTCTTGTGCTACTAGTTGTGCCTATTCTACACAC Gila_robusta TATTCCAAATAAGCTAGGAGGGGTCCTCGCACTATTATTTAGTATTCTTGTACTACTAGTCGTGCCCATTCTACATAC Rhinichthys_osculus TATTCCAAACAAGCTAGGAGGGGTCCTAGCACTATTATTTAGCATTCTAGTACTATTAGT-GTGCCAATTTTACATAC Agosia_chrysogaster TATTCCAAA-AAGCTAGG--GGGTTCTGGCACTATT-TTCAG-ATCCTGGTA-TATTAGT-GTCCC---TTTACATAC Oncorhynchus_mykiss CATCCCCAACAAGCTGGGAGGAGTACTTGCCCTTTTATTCTCGATCCTTGTCCTCATGGTTGTCCCCATCCTACACAC Poeciliopsis_occidentalis CTCTAAACAACGAAGCCTTACCTTCCGACCTTTCACCCAAGTACTCTTTTGACTGTTAATTGCAGACGTAGCAATTCT Cyprinodon_macularius ATCTAAACAACGAAGCCTAACTTTTCGCCCCTTCACACAATTCCTCTTCTGGCTCTTAGTTGCTGATGTTGTGATCCT Xyrauchen_texanus CTCCAAGCAACGAGGACTAACATTTCGCCCGGCCACCCAATTCCTATTCTGAACCTTAGTTGCTGATATGATTATCCT Catostomus_plebeius CTCCAAGCAGCGAGGACTAACGTTTCGCCCAGCCACCCAATTTCTATTCTGAACCTTGGTTGCCGACATAATTATCCT Lepidomeda_mollispinis CTCAAAACAACGAGGACTTACCTTTCGCCCTATGACCCAATTCCTATTCTGAACCCTCGTAGCAGACATACTTATTCT Lepidomeda_vittata CTCTAAACAACGAGGACTCACCTTCCGCCCCGTGACCCAATTCCTATTCTGAACCCTCGTAGCAGACATACTTATTCT Plagogterus_argentissimus CTCTAAACAACGAGGACTCACCTTCCGCCCTATGACCCAATTTCTATTCTGAACCCTCGTAGCAGACGTACTTGTTCT Meda_fulgida CTCTAAGCAACGTGGACTAACCTTCCGCCCAGTGACCCAATTCTTATTCTGAGCCCTCGTAGCGGACGTACTTATTCT Gila_cypha CTCAAAACAACGAGGACTAACCTTCCGCCCCATGACCCAATTTCTATTCTGAACCCTAGTGGCAGATATACTTATCTT Gila_robusta CTCAAAACAACGAGGACTAACCTTCCGTCCTGTGACCCAATTTCTATTCTGAACCCTAGTGGCAGATATACTTATCCT Rhinichthys_osculus CTCAAAGCAACGAGGACTAACTTTCCGTCCAATCACCCAGTTCTTATTCTGAACCTT-GTGGCAGACATAATCATTTT Agosia_chrysogaster CTCTAAGCAACG-GGATTAACCTTCCGGCCG-TCACCCAGTTCCTGTTCTGACCCTG-GTGGCCGACATGGCCATCCT Oncorhynchus_mykiss TTCTAAACAACGAGGACTAACCTTTCGACCGCTCACCCAATTCTTATTTTGGGCCTTAGTAGCAGATATACTCATCCT Poeciliopsis_occidentalis TACATGAATCGGAGGCATACC-GTTGAACATCCATTCATTATCATTGGTCAAGTAGCCTCATTCCTCTACTTCTCCCT Cyprinodon_macularius AACATGAATCGGGGGGATACCGGTAGAACACCCCTTCGTCATTATTGGGCAAGTAGCCTCCTTCCTTTACTTCTTCTT Xyrauchen_texanus AACATGAATTGGAGGAATGCCAGTAGAACATCCGTTTATTGTTATTGGACAAGTTGCGTCCGCCCTATACTTCGCCCT Catostomus_plebeius AACGTGAATTGGGGGTATGCCGGTAGAACATCCATTTATTGTCATCGGACAAATTGCGTCCGCCTTATACTTTGCCCT Lepidomeda_mollispinis GACATGAATCGGAGGTATACCCGTAGAACACCCATATGTCATAATTGGTCAAGTCGCATCAATCTTATACTTTACGCT Lepidomeda_vittata GACATGAATCGGAGGTATACCTGTAGAGCACCCCTATGTCATAATTGGCCAAGTCGCATCAATCTTGTACTTTACACT Plagogterus_argentissimus TACATGAATTGGGGGCATGCCCGTGGAACACCCATATGTCATAATTGGCCAGGTCGCATCACTCTTGTACTTTTCACT Meda_fulgida TACCTGAATTGGGGGCATACCCGTAGAACACCCATATGTCGCAATTGGACAAATCGCATCCCTGTTATACTTTGCACT Gila_cypha AACATGAATCGGAGGCATACCCGTAGAACATCCATATATTATCATTGGCCAAGCCGCATCAATTCTATACTTTGCACT Gila_robusta GACATGAATTGGAGGCATGCCCGTAGAACACCCATACATTATTATTGGCCAAGCCGCATCGGTTCTATACTTTGCACT Rhinichthys_osculus AACATGAATTGGAGGCATACCCGTAGAACACCCATATATCATCATTGGCCAAATCGCGTCGGTGCTGTACTTCGCACT Agosia_chrysogaster CACATGAATTGGAGGCATACCCGTAGAACACC-ATA-ATCATCATCGGCCAAGTTGCCTCGGTTCTGTACTT---GCC Oncorhynchus_mykiss CACCTGAATCGGAGGCATACCTGTAGAACACCCCTTCATTATTATCGGACAAGTCGCCTCTGTAATTTACTTCACCAT Poeciliopsis_occidentalis ATTCT-AGTCCTCGCCCCCACTGCCGCATGAATAGAAAATAAAATTCTCGGATGATAA-------------------- Cyprinodon_macularius GTTCCTTGTTCTTTCCCCCGCCGCAGCTTGACTAGAAAACAAAATCCTCGGATGATAA-------------------- Xyrauchen_texanus ATTCCTAATCTTAACCCCGCTAGCCGGGTGATTAGAAAACAAGGCACTAGAATGAGCT-------------------- Catostomus_plebeius ATTCCTTATCCTAGCCCCACTGGCCGGGTGGTTGGAGAATAAGGCACTAGAATGAGCTGCC----------------- Lepidomeda_mollispinis CTTTCTAGTTCTTATCCCACTAACGGGCTGGGTTGAAAATAAAGCACTGAAATGAGCC-------------------- Lepidomeda_vittata CTTTCTAGTTCTTATTCCACTAACGGGCTGGGTTGAAAATAAAGCACTGAAATGAGCT-------------------- Plagogterus_argentissimus ATTTCTGGTCCTTATCCCGCTAGCAGGATGGGCCGAAAATAAAGCATTGAAATGAGCC-------------------- Meda_fulgida GTTTCTTGTACTTATCCCACTGGC-GGGTGAGTCGAGAACAAAGCATTGAAATGAGCC-------------------- Gila_cypha TTTCCTTGTTCTTGTCCCGCTGGCAGGATGAGTAGAAAATAAAGCACTGAAATGAGCT-------------------- Gila_robusta TTTCCTTATTCTTGTCCCACTGGCAGGATGAATGGAAAATAAAGCGTTGAAATGAGCT-------------------- Rhinichthys_osculus CTTCCTTGTTCTCGCCCCCCTCGCAGGGTGAGCCGAGAATAAAGCATTGAAATGAGCT-------------------- Agosia_chrysogaster TATTCCTCCTCCTACCCCACTTGCAGGCTGAGCAGA-AATAAAGCGT-GAAATGAGCT-------------------- Oncorhynchus_mykiss CTTCCTAGTTCTTTCCCCCTTAGCCGGCTGGGCCGAAAATAAAGCCCTCCAATGAGCC-------------------- Poeciliopsis_occidentalis ------- Cyprinodon_macularius ------- Xyrauchen_texanus ------- Catostomus_plebeius ------- Lepidomeda_mollispinis ------- Lepidomeda_vittata ------- Plagogterus_argentissimus ------- Meda_fulgida ------- Gila_cypha ------- Gila_robusta ------- Rhinichthys_osculus ------- Agosia_chrysogaster ------- Oncorhynchus_mykiss ------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1177; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1177; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1177; END;