#NEXUS [written Thu Nov 21 01:08:28 CET 2013 by Mesquite version 2.75 (build 564) at Jose-PC/192.168.0.198] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS R14 R24 R13 R19 R20 R21 R16 R17 R26 R18 R15 R23 R22 R25 R1 R4 R3 R9 R6 R5 R2 R8 R7 R12 R10 R11 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=187; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = N; MATRIX R14 AGGTGCGACCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R24 AGGTGCGATCATACCAGCACAAATGCTCCGGATCCCATCAGAACTCTGAA R13 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCGGAACTCCGCA R19 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R20 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R21 AGGTGCGATCATACCAGCATTAATGCACCGGATCCCATCAAAACTCCGCA R16 AGGTGCGATCATACCAGCACTAATGCAGCGGATCCCATCAGAACTCCACA R17 AGGTGCGATCATACCAGCACTAATGCATCGGATCCCATCAGAACTCCGCA R26 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R18 AGTTGCGATCATGCCAGCACTAATGCACTGGATCCCATCAGAACTTCGCA R15 AGGTGCGATCATGCCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R23 AGGTCCTATCATACCATCACTAATGCACCGGATCCCATCAGAACTTCGCA R22 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTTCGCA R25 AGGTGCGATCATACCAGCACTAATGTATCGAATCCCATCAGAACTTCACA R1 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R4 AGGTGCGATCATACCAGCGCTAATGCACCGGATCCCATCAGAACTCCGCA R3 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R9 AGGTGCGATCATACCAGCACAAATGCTCCGGATCCCATCAGAACTCTGAA R6 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R5 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R2 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R8 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCGGAACTCCGCA R7 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGTA R12 AGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCA R10 AGGTGCGATCATACCAGCATTAATGCACCGGATCCCATCAAAACTCCGCA R11 AGGTGCGATCATACCAGCACTAATGTATCGAATCCCATCAGAACTTCACA R14 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R24 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTC--- R13 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R19 GTCACGCGTGCTTGGGCGAGAGTTGTACTGGGATGGGTGACCTCCTG--- R20 GTCACGCGTGCTTGGGCGAGAGTTGTACTGGG-TGGGTGACCTCCTG--- R21 GTTAAGCGTGCTTGGGCGGGAGTTGTACTGGGATGGGTGACCTCCTG--- R16 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R17 GTTAAGCGTGTTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R26 GTTAAGCG-------------GTAGTACTGGGATGGGTGACCTCCTG--- R18 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R15 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R23 GTTAAGCTTGCTTGGGCTGGAGTAGTACTGGGATGGGTGACCTCCTG--- R22 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGATGACCTCCTG--- R25 GTTAAGTGTGCTTGCACGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R1 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R4 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R3 GTTAAGCGTGCTTGGGCGAGTGTAGTACTGGGATGGGTGACCTCCTG--- R9 GTTAAGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R6 GT-AAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCCCCTG--- R5 GTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCCCCTG--- R2 GTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTG--- R8 GTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTG--- R7 GTCACGCGTGCTTGGGCGAGAGTAGTACTGGGATGGGTGACCTCCTG--- R12 GTCACGCGTGCTTGGGCGAGAGTTGTACTGGGATGGGTGACCTCCTGTAC R10 GTTAAGCGTGCTTGGGCGGGAGTTGTACTGGGATGGGTGACCTCCTG--- R11 GTTAAGTGTGCTTGCACGAGAGTAGTACTAGGATGGATGACCTACTG--- R14 -------------------------------------------------- R24 -------------------------------------------------- R13 -------------------------------------------------- R19 -------------------------------------------------- R20 -------------------------------------------------- R21 -------------------------------------------------- R16 -------------------------------------------------- R17 -------------------------------------------------- R26 -------------------------------------------------- R18 -------------------------------------------------- R15 -------------------------------------------------- R23 -------------------------------------------------- R22 -------------------------------------------------- R25 -------------------------------------------------- R1 -------------------------------------------------- R4 -------------------------------------------------- R3 -------------------------------------------------- R9 -------------------------------------------------- R6 -------------------------------------------------- R5 -------------------------------------------------- R2 -------------------------------------------------- R8 -------------------------------------------------- R7 -------------------------------------------------- R12 TGGGATGGGTGACCTCCAGTGTACTGGGATGGTGACCTCCATGTACTGGG R10 -------------------------------------------------- R11 -------------------------------------------------- R14 ---------------GGAAGTCCTTGTGTTGCACCTC R24 ---------------CGAAGTCCTTGTGTTGCACCTC R13 ---------------GGAAGTCCTTGTGTTGCACCTC R19 ---------------GGAAGTCCTTGTGTTGCACCTC R20 ---------------GGAAGTCCTTGTGTTGCACCTC R21 ---------------GGAAGTCCTTGTGTTGCACCTC R16 ---------------GGAAGTCCTTGTGTTGCACCTC R17 ---------------GGAAGTCGTTGTGTTGCACCTC R26 ---------------GGAAGTCCTTGTGCTGCACCTC R18 ---------------GGAAGTCCTTGTGTTGCACCTC R15 ---------------GGAAGTCCTTGTGTTGCACCTC R23 ---------------GGAAGTCCTGGTGTTGCACCTC R22 ---------------GAATGTCCTTGTGTTGCACCTC R25 ---------------GGAAGTCCTAGTGTTGCACCTC R1 ---------------GGAAGTCCTTGTGTTGCACCTC R4 ---------------GGAAGTCCTTGTGTTGCACCTC R3 ---------------GGAAGTCCTTGTGTTGCACCTC R9 ---------------GGAAGTCCTTGTGTTGCACCTC R6 ---------------GGAAGTCCTTGTGTTGCACCTC R5 ---------------GGAAGTCCTTGTGTTGCACCTC R2 ---------------GGAAGTCCTTGTGTTGCACCTC R8 ---------------GAATGTCCTTGTGTTGCACCTC R7 ---------------GGAAGTCCTTGTGCTGCACCTC R12 ATGGGTGACCTCCTGGGAAGTCCTTGTGTTGCACCTC R10 ---------------GGAAGTCGTTGTGTTGCACCTC R11 ---------------GGAAGTCCTGGTGTTGCACCTC ; END; BEGIN ASSUMPTIONS; options deftype = unord; TYPESET * UNTITLED = unord: 1 - 187; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 R14, 2 R24, 3 R13, 4 R19, 5 R20, 6 R21, 7 R16, 8 R17, 9 R26, 10 R18, 11 R15, 12 R23, 13 R22, 14 R25, 15 R1, 16 R4, 17 R3, 18 R9, 19 R6, 20 R5, 21 R2, 22 R8, 23 R7, 24 R12, 25 R10, 26 R11; TREE Imported_tree_0 = (((((((((((4,5)0.3200,24)0.7200,(6,25)0.8000)0.4400,((2,18)0.9800,(9,23)0.4300)0.2800)0.1100,(15,17)0.0900)0.0200,(1,16)0.0500)0.0100,(10,11)0.4300)0.0600,(3,((13,22)0.4600,(21,(19,20)0.6600)0.5300)0.1900)0.0800)0.1500,(7,8)0.2000)0.4000,12)0.9800,(14,26)0.9800); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 187; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 187; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1384992508664; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7056673710176262038; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2632840564899840889; mqVersion 275; checksumv 0 3 22262677 null getNumChars 187 numChars 187 getNumTaxa 26 numTaxa 26 short true bits 15 states 15 sumSquaresStatesOnly 65646.0 sumSquares 65646.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 371; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 682; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;