#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=28; TAXLABELS Phaeoacremonium_aleophilum_AF017651 Phialophora_repens_AF083195 Phaeoacremonium_viticola_AF118137 Phaeoacremonium_angustius_AF197976 Phaeoacremonium_rubrigenum_AF197988 Phaeoacremonium_inflatipes_AF197990 Phaeoacremonium_mortoniae_AF295328 Phaeoacremonium_mortoniae_AF295329 Diaporthe_ambigua_AJ458389 Pleurostomophora_richardsiae_AY729811 Pleurostomophora_ootheca_HQ878590 Pleurostomophora_ochracea_JX073270 Pleurostomophora_richardsiae_PLEU11 Pleurostomophora_richardsiae_PLEU21 Pleurostomophora_richardsiae_PLEU22 Pleurostomophora_richardsiae_PLEU24 Pleurostomophora_richardsiae_PLEU25 Pleurostomophora_richardsiae_PLEU26 Pleurostomophora_richardsiae_PLEU27 Pleurostomophora_richardsiae_PLEU29 Pleurostomophora_richardsiae_PLEU3 Pleurostomophora_richardsiae_PLEU4 Pleurostomophora_richardsiae_PLEU5 Pleurostomophora_richardsiae_PLEU6 Pleurostomophora_richardsiae_PLEU7 Pleurostomophora_richardsiae_PLEU8 Pleurostomophora_richardsiae_PLEU9 Phaeoacremonium_parasiticum_U31841 ; END; BEGIN CHARACTERS; TITLE 'Pleurostomophora richardsiae, N. parvum and P. aleophilum on Italian Olives'; DIMENSIONS NCHAR=645; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phaeoacremonium_aleophilum_AF017651 -------------------------------------------AGGGATCATTATCGAGTTTCGTGCTCC-AAACCCTTTGTGAACAT-ACCTGTTTTCGTTGCTTCGGCAGGTC-GGGGGCCAA--CCCC--GCC------CGCCGCCGGACTC-TCCCTCGCGGGGCTGCGCC-GGCGGGCCTGCCGGAGGGCACA---GACTCTGTATTCAA-AAACGTACCTCTCTGAGTTAT--CTTTACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTCAGCGGGC-GCGG-CCCCGAAAGTCAGTGGCGGGCTCGC-AGGACTCCGAGCGCAGTAGTT--TACACCTCGCTGCGGAGGACCTGGCGGGTTAC-CCAGCCGTAAAACACCCCAAACTTC-TAAGGTTGACCTCGGATCAGGTAGGAATACCGCTGAACTTAAGCTATCAATAAGCG-------- Phialophora_repens_AF083195 GGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACTGAGTTGCAAAACTCCCAAACCCACGCGTACCTTACCTATGT-CGTTGCTTCGGCGG-CGCCGCCCACTG-------G---------------CCG---------CTCCGGCG-CCCGGGGGGTGTGCCCGCCGGAGGTT-CTACAAACTCTCTGTATCA-CAGTGGAC-TCTCTGAGAAAAA--CATATCAAT-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCC----CAGCCTGGCGTTGGGGCACCGCG-CAGCGCG-----C-GCGGGCCCTGAAATACAGTGGCGAGCC-GCCTGGACTCCGAGCGTAGTAGTGTAAAAGCCTCGCTCAGGGCGTCC-GGCGCGCGTC---G-CCGTGAAAACCCCCAACTT-CACAAGGTTGACCTCGGATTCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA Phaeoacremonium_viticola_AF118137 -------------------------------------------AGGGATCATTACAGAGTTTCATACTCC-AAACCCTTTGTGAACAT-ACCTGTTTCCGTTGCTTCGGCAGGTC-GGGGGTCA---CCCCCCGCC------CGCCGCCGGGCC--CCCCTCGCGGGG--TCGCCCGGCGGGCCTGCCGGAGGGCACAA--GACTCTGTATTTCA-AAAC-TACCTCTCTGAGTTAT--CTTTACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-GCGGGC-GCGG-CCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTT--TAC-CCTCGCTGCGGAGGACCTGGCGGGTTTC-C-GGCCGTAAAACACCCCAAACTTC-TAAGGTTGACCTCGGATCAGG------------------------------------------- Phaeoacremonium_angustius_AF197976 -------------------------------------------------CATTACAGAGTTTCATACTCC-AAACCCTTTGTGAACAT-ACCTGTTTCCGTTGCTTCGGCAGGTC-GGGGGTCA---CCCCCCGCC------CGCCGCCGGGCC--CCCCTCGCGGGG--TCGCCCGGCGGGCCTGCCGGAGGGCACAA--GACTCTGTATTTCA-AAAC-TACCTCTCTGAGTTAT--CTTTACAAATAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCCTC-GCGGGC-GCGGGCCCCCAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTT--TACACCTCGCTGCGGAGGACCTGGCGGGTTTC-CCGGCCGTAAAACACCCCAAACTTTACAAGGTTGACCTCGGATCAGGTAGGAATACCCGC------------------------------ Phaeoacremonium_rubrigenum_AF197988 -----------------------------------------------------AACGAGTTTCGTACTCC-AAACCCTTTGTGAACAT-ACCTGTTTTCGTTGCTTCGGCAGGTGAAGGCGGAGGGCCTCCGGGCCTGAAGCCGCCGCCGGGCGGACCCCTCGCGGGGCGCTGCCGGGTGGGCCTGCCGGAGGGCACA---GACTCTGTATTACA---ACGTACCTCTCTGAGTTATA-TTTTACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGCACCCTCAGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAATT--T-TCTCTCGCTGTGGAGCGCCTGGTGGGTTAC-C-GGCB------SACCCCAAATTCTA-AAGGTTGACCTCGGATCAG-TAGGAAT------------------------------------ Phaeoacremonium_inflatipes_AF197990 -----------------------------------------------------ATCGAGTTTCGTACTCC-AAACCCTTTGTGAACAT-ACCTGTTTTCGTTGCTTCGGCAGGTTCAGGCGCTGG-CCTCCGGGCCTCCCGCCGCCGCCGGGCCCCCGCTCTGCCGGG-GTCGCCGGGCGGGCCTGCCGGAGGGCACA---GACTCTGTATTACA---ACGTACCTCTCTGAGTTATC-TTTTACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGCACCCT-AGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAATA--T-TGCCTCGCTGCGGAGGACCTGGTGGGTTAC-CCAGCCGTAAAACACCCCAAATTCTA-AAGGTTGACCTCGGATCAGGTAGGAATACCCCGCTTGA------------------------- Phaeoacremonium_mortoniae_AF295328 -------------------------------------------------------------------CTC-AAACCCTTTGTGAACAT-ACCTGTTT-CGTTGCTTCGGCAGGCCCGGGGGTCAC--TCCCCGGCC------CGCCGCCGG-CAC-CCCCTCGCCGGGGCGCAT--GGCGGGCCTGCCGGAGGGCACA---GACTCTGTATTCAA-AAACGTACCTCTCTGAGTTAT--CTTTACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCC-CAGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTT--TACACCTCGCTGCGGAGGACCTGGCGGGTTTC-CCGGCCGTAAAACACCCCAAATTTTACAAGGTTGACCTCGGATCAGGT------------------------------------------ Phaeoacremonium_mortoniae_AF295329 ------------------------------------------------------------------CTCC-AAACCCTTTGTGAACAT-ACCTGTTT-CGTTGCTTCGGCAGGCCCGGGGGTCAC--TCCCCGGCC------CGCCGCCGG-CAC-CCCCTCGCCGGGGCGCAT--GGCGGGCCTGCCGGAGGGCACA---GACTCTGTATTCAA-AAACGTACCTCTCTGAGTTAT--CTTTACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGTCCCC-CAGCGGGC-GCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAGTT--TACACCTCGCTGCGGAGGACCTGGCGGGTTTC-CCGGCCGTAAAACACCCCAAATTTTACAAGGTTGACCTCGGATCAGGT------------------------------------------ Diaporthe_ambigua_AJ458389 ------------------------------------------------------------GGCGCACCCAGAAACCCTTTGTGAACTT-ATACCTAT-CGTTGCCTCGGCGA----AGGC-----------CGGCCT-----CCCCACCGAG-----GCCCCTTGGGA--ACAAGGAGCAG-CCCGCCGGCGGCCAACC--AAACTCTTGTTTCT-TAGTGAA--TCTCTGAGTAAAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC----TGGCTTGGTGATGGGGCACTGCTTCCG---AGAGGGA-GCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGT---TATATCTCGCTCCGGAAGGCCCTGGCGGTGCC--CTGCCGTTAAACC---------------------------------------------------------------------------- Pleurostomophora_richardsiae_AY729811 -----------------------------------------------------TCCGAGTTGCAAACTCCCAAAACCCACCCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCCCGCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_ootheca_HQ878590 ------------------------------------------------------CTGAGTTGCAAAACTCCCAAACCCACGCGTATCT-ACCTATGT-CGTTGCTTCGGCGG-CGCCGTCCCCAG-------G---------------T-G---------CTCCGGCG-CCGCGGGGGCG--CCCGCCGGAGGTT-CTA--AACTCTCTGTATCA-CTGTGGAC-TCTCTGAGAAAA---CATACCAAT-AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCC----CAGCCTGGCGTTGGGGCACCGCG-CAGCGCG-----C-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGTGTAACAGCCTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACCCCCCAACTA-TCAAAGG----------------------------------------------------------- Pleurostomophora_ochracea_JX073270 -----------------------------------------------ATCATTACTGAGTTGCAAAACTCC-AAACCCACGCGTACTT-ACCACTGT-CGTTGCTTCGGCGGACGCCGCCCCCGG-------TGTCCATCTCCTTCCCCAG---------CGGGAGGA-GGGCCCTGGGTCGCCCGCCGGAGGTTAACCAAACTCTTCTGTATCAACTGTGAAA-C-TCTGAGCATAA--GCTTCAATA-AGTAAAAACTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCGGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCACCGCG-CAGCGCG-----C-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGCCTAAAAACCTCGCTCAGGGCGTCCCGGCGCGCGTC---TGCCGTAAAACACCCC------------------------------------------------------------------------ Pleurostomophora_richardsiae_PLEU11 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU21 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU22 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU24 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU25 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU26 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU27 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU29 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU3 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU4 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU5 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU6 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU7 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU8 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Pleurostomophora_richardsiae_PLEU9 -------------------------------------------AGGGATCATTACCGAGTTGCAAAACTCCCAAACCCACGCGTACCT-ACCTACA--CGTTGCTTCGGCGG-TGCCGCCGCGGG-------GGG---------TGCCCAG---------CTGCTGGG-CCCCCCCGGGGCGCCCGCCGGAGGCCACTAAAACTCTTCTGTATCT-C-GCGTAC-CATCTGAGCGAA----TGGCGAAT-AATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCGGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAGGCC----CTGCCTGGCGTTGGGGCGCCGCGGCGGCGAGAGCCCC-GCGGGCCCTGAAATACAGTGGCGAGCCCGCCTGGACTCCGAGCGTAGTAGC----AACACTCGCTCAGGGCGTCCCGGCGCGCGTC---GGCCGTAAAACACCCCAACTCACCAAAGGTTGACCTCGGA------------------------------------------------ Phaeoacremonium_parasiticum_U31841 -------------------------------------------AGGGATCATTAACGAGTTTCGTACTCC-AAACCCTTTGTGAACAT-ACCTGTTTTCGTTGCTTCGGCAGGTGAAGGCGGACG--CTCCGGGCCTGAAGCCGCCGCCGGCCG--CCTCTCGCGGGG--CGGCCGGGTGGGCCTGCCGGAGGGCACA---GACTCTGTATTACA-TAACGTACCTCTCTGAGTTATA-TTTTACAAACAAGTAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAGGCCCTGGTTGCCTGGTGTTGGGGCGCCGCGCACCCTCAGCGGGCCGCGGGCCCCGAAAGTCAGTGGCGGGCTCGCCAGGACTCCGAGCGCAGTAATT--C-TCTCTCGCTGTGGAGCGCCTGGTGGGTTTTACCAGCCGTAAAACACCCCAACTTCCA-AAGGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA- ; END; BEGIN SETS; CHARSET excluded = 1-67 566-645; END; BEGIN TREES; Title 'Pleurostomophora richardsiae, N. parvum and P. aleophilum on Italian Olives'; LINK Taxa = Taxa; TRANSLATE 1 Phaeoacremonium_aleophilum_AF017651, 2 Phialophora_repens_AF083195, 3 Phaeoacremonium_viticola_AF118137, 4 Phaeoacremonium_angustius_AF197976, 5 Phaeoacremonium_rubrigenum_AF197988, 6 Phaeoacremonium_inflatipes_AF197990, 7 Phaeoacremonium_mortoniae_AF295328, 8 Phaeoacremonium_mortoniae_AF295329, 9 Diaporthe_ambigua_AJ458389, 10 Pleurostomophora_richardsiae_AY729811, 11 Pleurostomophora_ootheca_HQ878590, 12 Pleurostomophora_ochracea_JX073270, 13 Pleurostomophora_richardsiae_PLEU11, 14 Pleurostomophora_richardsiae_PLEU21, 15 Pleurostomophora_richardsiae_PLEU22, 16 Pleurostomophora_richardsiae_PLEU24, 17 Pleurostomophora_richardsiae_PLEU25, 18 Pleurostomophora_richardsiae_PLEU26, 19 Pleurostomophora_richardsiae_PLEU27, 20 Pleurostomophora_richardsiae_PLEU29, 21 Pleurostomophora_richardsiae_PLEU3, 22 Pleurostomophora_richardsiae_PLEU4, 23 Pleurostomophora_richardsiae_PLEU5, 24 Pleurostomophora_richardsiae_PLEU6, 25 Pleurostomophora_richardsiae_PLEU7, 26 Pleurostomophora_richardsiae_PLEU8, 27 Pleurostomophora_richardsiae_PLEU9, 28 Phaeoacremonium_parasiticum_U31841; TREE Fig._2 = (9:27.5,(((6:12.0,(5:1.0,28:6.0):1.0):27.0,((3:0.0,4:1.0):2.0,(1:6.0,(7:2.0,8:0.0):8.0):5.0):10.0):41.0,((12:27.0,(2:9.0,11:4.0):20.0):49.0,(10:4.0,13:0.0,14:0.0,15:0.0,16:0.0,17:0.0,18:0.0,19:0.0,20:0.0,21:0.0,22:0.0,23:0.0,24:0.0,25:0.0,26:0.0,27:0.0):70.0):5.0):27.5)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN PAUP; set maxtrees = 10000; log file = MPhrbt.log; outgroup AJ458389_Diaporthe_ambigua; exclude 1 -67 566 -645; set criterion = parsimony; pset gapmode = missing; bootstrap nreps = 1000 search = heuristic treefile = MPhrbt.tre brlens = yes / addseq = random nreps = 10 swap = TBR; savetrees from = 1 to = 1 file = MPbt.tre brlens = yes; log stop; END; BEGIN PAUP; set maxtrees = 10000; log file = MPhr.log; outgroup AJ458389_Diaporthe_ambigua; exclude 1 -67 566 -645; set criterion = parsimony; pset gapmode = missing; hsearch addseq = random nreps = 1000 swap = TBR multrees = yes; pscores / CI = yes RI = yes HI = yes; savetrees file = MPhr.tre brlens = yes; contree / strict = yes treefile = MPhrcon.tre; log stop; END;