#NEXUS [written Sun Nov 24 15:36:51 GMT-07:00 2013 by Mesquite version 2.75 (build 564) at SLF303L-01/192.168.2.104] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS G._pinyonensis3 GeoSun3_LROR G._pinyonensis_5 GeoSun5_LROR Geopora_typeE_HQ630382 Geopora_typeJ_HQ630383 Geopora_typeK_HQ630384 Geopora_typeZ_HQ630385 Geopora_typeC_HQ630381 Geopora_arenicola_DQ220336 Geopora_arenicola_DQ220337 Geopora_sp_DQ220338 Geopora_clausa_DQ220339 Geopora_sp_DQ223973 Geopora_cf_cervina_DQ220344 Geopora_pellita_DQ220343 Pyronemataceae_sp_GQ281477 Geopora_cercocarpi_HQ283091 Geopora_cercocarpi_HQ283098 Geopora_sp_DQ220345 Geopora_cooperi_f._gilkeyae_DQ220342 Geopora_cooperi_DQ220340 Geopora_cooperi_DQ220341 Pyronema_domesticum_NG_027655 Wilcoxina_mikolae_DQ220468 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=801; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX G._pinyonensis3 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG GeoSun3_LROR ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG G._pinyonensis_5 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG GeoSun5_LROR ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_typeE_HQ630382 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_typeJ_HQ630383 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_typeK_HQ630384 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_typeZ_HQ630385 -------------------------------------------------- Geopora_typeC_HQ630381 ----------TAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATC? Geopora_arenicola_DQ220336 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_arenicola_DQ220337 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_sp_DQ220338 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_clausa_DQ220339 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_sp_DQ223973 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_cf_cervina_DQ220344 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_pellita_DQ220343 ATTGCCCCAGTAACTGCGAGTGAAGCGGCAAGAGCTCAAAGTTGAAATCT Pyronemataceae_sp_GQ281477 ---------------GCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_cercocarpi_HQ283091 ----------TAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_cercocarpi_HQ283098 ---------------------------------GCTCAAATTTGAAATCG Geopora_sp_DQ220345 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_cooperi_f._gilkeyae_DQ220342 -----CTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_cooperi_DQ220340 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Geopora_cooperi_DQ220341 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCG Pyronema_domesticum_NG_027655 --TGCCTCAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCT Wilcoxina_mikolae_DQ220468 ATTGCCTTAGTAACTGCGAGTGAAGCGGCAAAAGCTCAAATTTGAAATCT G._pinyonensis3 G-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC GeoSun3_LROR G-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC G._pinyonensis_5 G-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC GeoSun5_LROR G-TGCGT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_typeE_HQ630382 G-TGCG?TACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_typeJ_HQ630383 G-TGCCC-ATCTATTGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_typeK_HQ630384 G-TGATCTATCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_typeZ_HQ630385 --------------------T-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_typeC_HQ630381 GGTGCCTACCCAATCGCGCAT-CGAG?TTGTAATTTGGAGGGACAACTTC Geopora_arenicola_DQ220336 G-CGTCT-CCACGAGAT--GT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_arenicola_DQ220337 G-CGTCT-CCACGAGAT--GT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_sp_DQ220338 A-CGTCT-CCACGAGGT--GT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_clausa_DQ220339 G-TGTC---CATCAAAC--GC-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_sp_DQ223973 G-TGTCT-ACCTAAGGC--GT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_cf_cervina_DQ220344 G-TGTCT-ACCTTAGGC--GT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_pellita_DQ220343 G-TGTCCCTTGCGGGGC--AC-CGAGTT-GTAATTTGCAGGGATGGCTTC Pyronemataceae_sp_GQ281477 G-TGTCT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_cercocarpi_HQ283091 G-TGTCT-ACCAAACGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_cercocarpi_HQ283098 G-TGTCT-ACCAAACGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_sp_DQ220345 G-TGCCT-ACCAATCGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_cooperi_f._gilkeyae_DQ220342 G-TGTCC-ATAAAGTGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_cooperi_DQ220340 G-TGTCC-ATAAAGTGC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Geopora_cooperi_DQ220341 G-TGTCC-ATAAAGTAC--AT-CGAGTT-GTAATTTGGAGGGACAACTTC Pyronema_domesticum_NG_027655 GGCGTCT-----TCGGC--GTCCGAGTT-GTAATTTGGAGAGGCATCTTC Wilcoxina_mikolae_DQ220468 GGCGTCT-----TTGGC--GTCCGAATT-GTAATTTGGAGAGGCATCTTC G._pinyonensis3 GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG GeoSun3_LROR GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG G._pinyonensis_5 GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG GeoSun5_LROR GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_typeE_HQ630382 GGG?CTGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_typeJ_HQ630383 GGG?CTGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATGGAGGGTG Geopora_typeK_HQ630384 GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_typeZ_HQ630385 GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_typeC_HQ630381 GGGC-CGAACCACACCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_arenicola_DQ220336 GGGC-TGAACCACATTGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_arenicola_DQ220337 GGGC-TGAACCACATTGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_sp_DQ220338 GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_clausa_DQ220339 GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCACAGAGGGTG Geopora_sp_DQ223973 GGAC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_cf_cervina_DQ220344 GGAC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_pellita_DQ220343 GGGGTGGGACCGCGTCGCAAGTTCCTTGGAACAGGACGTCATGGAGGGTG Pyronemataceae_sp_GQ281477 GGGC-TGAACCACATCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_cercocarpi_HQ283091 GGGC-TGAACCACACCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_cercocarpi_HQ283098 GGGC-TGAACCACACCGTAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_sp_DQ220345 GGGC-TGAACCACACCGCAAGTTCCTTGGAACAGGACGTCATAGAGGGTG Geopora_cooperi_f._gilkeyae_DQ220342 GGGG-CGAACCACACCGTAAGTTTTTTGGAACAGGACATCATAGAGGGTG Geopora_cooperi_DQ220340 GGGG-CGAACCACACCGTAAGTTTTTTGGAACAGGACATCATAGAGGGTG Geopora_cooperi_DQ220341 GGGC-CGAACCACACCGTAAGTTTTTTGGAACAGGACATCATAGAGGGTG Pyronema_domesticum_NG_027655 GGATATGGCGC-CGTCCTAAGTTCCTTGGAACAGGACGTCACAGAGGGTG Wilcoxina_mikolae_DQ220468 GGTGATGGCGC-TGTCCTAAGTTCCTTGGAACAGGATGACATAGAGGGTG G._pinyonensis3 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC GeoSun3_LROR AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC G._pinyonensis_5 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC GeoSun5_LROR AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_typeE_HQ630382 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_typeJ_HQ630383 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_typeK_HQ630384 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_typeZ_HQ630385 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_typeC_HQ630381 AGAATCCCGTGTCTCGGTGTCGGGTCGAACC-ATGTGAAGTGTCTCCGAC Geopora_arenicola_DQ220336 AGAATCCCGTGTCTCGATGTCGGGTCAAACC-GTGTGAAGTGTCTCCGAC Geopora_arenicola_DQ220337 AGAATCCCGTGTCTCGATGTCGGGTCAAACC-GTGTGAAGTGTCTCCGAC Geopora_sp_DQ220338 AGAATCCCGTGTCTTGATGTCGGGTCAAACCCGTGTGAAGTGTCTCCGAC Geopora_clausa_DQ220339 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_sp_DQ223973 AGAATCCCGTGTCTCGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_cf_cervina_DQ220344 AGAATCCCGTGTCTCGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_pellita_DQ220343 AGAATCCCGTGTC--GATGGGGGTCCCAACCCATGTGAAGTGTTTCCAAA Pyronemataceae_sp_GQ281477 AGAATCCCGTGTCTTGATGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_cercocarpi_HQ283091 AGAATCCCGTGTCTTGGTGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_cercocarpi_HQ283098 AGAATCCCGTGTCTTGGTGTCGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_sp_DQ220345 AGAATCCCGTGTCTTGGTGTCGGGTCAACCC-ATGTGAAGTGTCTCCGAC Geopora_cooperi_f._gilkeyae_DQ220342 AGAATCCCGTGTCTTGGTGTAGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_cooperi_DQ220340 AGAATCCCGTGTCTTGGTGTAGGGTCAAACC-ATGTGAAGTGTCTCCGAC Geopora_cooperi_DQ220341 AGAATCCCGTGTCTTGGTGTAGGGTCAAACC-ATGTGAAGTGTCTCCGAC Pyronema_domesticum_NG_027655 AGAATCCCGTGCCTGGTCGGCTGTCCATATCCATGTGAAGTGTCTTCGAC Wilcoxina_mikolae_DQ220468 AGATCCCCGTGCCTGGGTGGCTGTCCATCTCCATGTGAAGTGTCTTCGAC G._pinyonensis3 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT GeoSun3_LROR GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT G._pinyonensis_5 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT GeoSun5_LROR GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_typeE_HQ630382 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_typeJ_HQ630383 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_typeK_HQ630384 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_typeZ_HQ630385 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_typeC_HQ630381 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_arenicola_DQ220336 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_arenicola_DQ220337 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_sp_DQ220338 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_clausa_DQ220339 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_sp_DQ223973 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_cf_cervina_DQ220344 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_pellita_DQ220343 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Pyronemataceae_sp_GQ281477 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_cercocarpi_HQ283091 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_cercocarpi_HQ283098 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_sp_DQ220345 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_cooperi_f._gilkeyae_DQ220342 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_cooperi_DQ220340 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Geopora_cooperi_DQ220341 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Pyronema_domesticum_NG_027655 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT Wilcoxina_mikolae_DQ220468 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCT G._pinyonensis3 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA GeoSun3_LROR AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA G._pinyonensis_5 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA GeoSun5_LROR AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_typeE_HQ630382 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_typeJ_HQ630383 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_typeK_HQ630384 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_typeZ_HQ630385 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_typeC_HQ630381 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_arenicola_DQ220336 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_arenicola_DQ220337 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_sp_DQ220338 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_clausa_DQ220339 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_sp_DQ223973 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_cf_cervina_DQ220344 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_pellita_DQ220343 AAAGCTAAATACCGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Pyronemataceae_sp_GQ281477 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_cercocarpi_HQ283091 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_cercocarpi_HQ283098 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_sp_DQ220345 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_cooperi_f._gilkeyae_DQ220342 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_cooperi_DQ220340 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Geopora_cooperi_DQ220341 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Pyronema_domesticum_NG_027655 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA Wilcoxina_mikolae_DQ220468 AAAGCTAAATATTGGCGAGAGACCGATAGCGCACAAGTAGAGTGATCGAA G._pinyonensis3 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA GeoSun3_LROR AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA G._pinyonensis_5 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA GeoSun5_LROR AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Geopora_typeE_HQ630382 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Geopora_typeJ_HQ630383 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Geopora_typeK_HQ630384 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_typeZ_HQ630385 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_typeC_HQ630381 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Geopora_arenicola_DQ220336 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_arenicola_DQ220337 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_sp_DQ220338 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_clausa_DQ220339 AGATGAAAAGCACTTTGAAAAGAGAGTCAAACAGTACGTGAAATTGTTGA Geopora_sp_DQ223973 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_cf_cervina_DQ220344 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_pellita_DQ220343 AGATGAAAAGCACTTTGAAAAGAGAGTGAGAAAGTACGTGAAATTGTTGA Pyronemataceae_sp_GQ281477 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_cercocarpi_HQ283091 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_cercocarpi_HQ283098 AGATGAAAAGCACTTTGAAAAGAGAGTCAAAAAGTACGTGAAATTGTTGA Geopora_sp_DQ220345 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Geopora_cooperi_f._gilkeyae_DQ220342 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Geopora_cooperi_DQ220340 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Geopora_cooperi_DQ220341 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Pyronema_domesticum_NG_027655 AGATGAAAAGAACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA Wilcoxina_mikolae_DQ220468 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGA G._pinyonensis3 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTC GeoSun3_LROR AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTC G._pinyonensis_5 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTC GeoSun5_LROR AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTC Geopora_typeE_HQ630382 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTC Geopora_typeJ_HQ630383 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGTTCAGCCGGACTC Geopora_typeK_HQ630384 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCAGCCGGGCTC Geopora_typeZ_HQ630385 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTC Geopora_typeC_HQ630381 AAGGGAAGCGCTTGCGACCAGACTCGACC-GTTGGTGATCAGCCGGGCTG Geopora_arenicola_DQ220336 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTT Geopora_arenicola_DQ220337 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTT Geopora_sp_DQ220338 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTT Geopora_clausa_DQ220339 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCAGCCGGGCTT Geopora_sp_DQ223973 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCGGCCGGGCTC Geopora_cf_cervina_DQ220344 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCGACCGGGCTC Geopora_pellita_DQ220343 AAGGGAAGCGCTTGCGACCAGACTCAAACATTTGGTGATCAGCTGGACTT Pyronemataceae_sp_GQ281477 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGGGATCAGCCGGGCTC Geopora_cercocarpi_HQ283091 AAGGGAAGCGCTTGCGACCAGACTCGATC-CTTGGTGATCAGCCGGGCTC Geopora_cercocarpi_HQ283098 AAGGGAAGCGCTTGCGACCAGACTCGATC-CTTGGTGATCAGCCGGGCTC Geopora_sp_DQ220345 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGTGATCAGCCGGGCTC Geopora_cooperi_f._gilkeyae_DQ220342 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGAGATCAGCCGGGCTT Geopora_cooperi_DQ220340 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGAGATCAGCCGGGCTT Geopora_cooperi_DQ220341 AAGGGAAGCGCTTGCGACCAGACTCGATC-TTTGGAGATCAGCCGGGCTT Pyronema_domesticum_NG_027655 AAGGGAAGCGCTTGAGACACCACTCGATC-TTTGGTGATCAGCCGGGCTT Wilcoxina_mikolae_DQ220468 AAGGGAAGCGCTTGAGACCAGACTCGATT-TGTGGTGATCAGCTGTGCTT G._pinyonensis3 CGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGT GeoSun3_LROR CGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGT G._pinyonensis_5 CGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGT GeoSun5_LROR CGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGT Geopora_typeE_HQ630382 CGGTCCGGTG--CCCTCGCCATTGATCGGGCCAGCATCGGTTCCGACGGT Geopora_typeJ_HQ630383 CGTTCCGGTGATCCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGT Geopora_typeK_HQ630384 CGGTCCGGTG--CCCTCACCATTGATTGGGCCAGCATCGGTTCCGACGGC Geopora_typeZ_HQ630385 CGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGT Geopora_typeC_HQ630381 CGGCCCGGTG--CCCTCACCATCGATTGGGCCAGCATCGGTTCCGACGGC Geopora_arenicola_DQ220336 CGGTCCGGTG--CCCTCGCCATTGGTTGGGCCAGCATCGGTTCCGGCGGT Geopora_arenicola_DQ220337 CGGTCCGGTG--CCCTCGCCATTGGTTGGGCCAGCATCGGTTCCGGCGGT Geopora_sp_DQ220338 CGGTCCGGTG--CCCTCCCCATTGGTTGGGCCAGCATCGGTTCCGGCGGT Geopora_clausa_DQ220339 CGGTCCGGTG--CCCTCGCCATTGGTTGGGCCAGCATCGGTTCCAGCGGT Geopora_sp_DQ223973 CGGTCCGGTC--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGT Geopora_cf_cervina_DQ220344 CGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGT Geopora_pellita_DQ220343 CTGTCCGGTG--CCCTCGCCACTGATTGGGCCAGCATCGGTTCCGACGGT Pyronemataceae_sp_GQ281477 CGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGT Geopora_cercocarpi_HQ283091 CGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGT Geopora_cercocarpi_HQ283098 CGGTCCGGTG--CCCTCGCCATTGATTGGGCCAGCATCGGTTCCGACGGT Geopora_sp_DQ220345 CGGTCCGGTG--CCCTCACCATTGATTGGGCCAGCATCGGTTCCGACGGC Geopora_cooperi_f._gilkeyae_DQ220342 CTGTTCGGTG--CCCTCTCCATTGATTGGGCCAGCATCGGTTCTGACGGT Geopora_cooperi_DQ220340 CTGTTCGGTG--CCCTCTCCATTGATTGGGCCAGCATCGGTTCTGACGGT Geopora_cooperi_DQ220341 CGGTTCGGTG--CCCTCTTCATTGATTGGGCCAGCATCGGTTCCGGCGGT Pyronema_domesticum_NG_027655 CTGTCTGGTG--CACTTGCCATTGATTGGGCCAGCATCGGTTCTGACGGT Wilcoxina_mikolae_DQ220468 CTGTACAGTG--CACTTGCCACAGATTGGGCCAGCATCGGTTCTGACGGT G._pinyonensis3 GGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCA GeoSun3_LROR GGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCA G._pinyonensis_5 GGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCA GeoSun5_LROR GGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCA Geopora_typeE_HQ630382 GGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCA Geopora_typeJ_HQ630383 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGGGAGTGTTATAGCCA Geopora_typeK_HQ630384 GGGATAAAAGGAGGAGGAATGTGACTCCCTTTGGGG-AGTGTTATAGCCA Geopora_typeZ_HQ630385 GGGATAAAAGGAGGAGGAATGTGGCTCCCTCCGGGG-AGTGTTATAGCCA Geopora_typeC_HQ630381 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCA Geopora_arenicola_DQ220336 GGGATAAAAGGAGGTGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCA Geopora_arenicola_DQ220337 GGGATAAAAGGAGGTGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCA Geopora_sp_DQ220338 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCA Geopora_clausa_DQ220339 GGGACAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCA Geopora_sp_DQ223973 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTTGGGG-AGTGTTATAGCCA Geopora_cf_cervina_DQ220344 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCA Geopora_pellita_DQ220343 GGGATAAAAGAGGGAGGAACGTGGCTGCCTCCGGGG-AGCGTTATAGCCT Pyronemataceae_sp_GQ281477 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCA Geopora_cercocarpi_HQ283091 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCA Geopora_cercocarpi_HQ283098 GGGATAAAAGGAGGAGGAATGTGGCTCCCTTCGGGG-AGTGTTATAGCCA Geopora_sp_DQ220345 GGGATAAAAGGAGGCGGAATGTAGCTCCCTTCGGGG-AGTGTTATAGCCA Geopora_cooperi_f._gilkeyae_DQ220342 GGGATAAAAGGAGGAGGAATGTGGCTCCCCTCGGGG-AGTGTTATAGCCA Geopora_cooperi_DQ220340 GGGATAAAAGGAGGAGGAATGTGGCTCCCCTTGGGG-AGTGTTATAGCCA Geopora_cooperi_DQ220341 GGGATAAAAGGAGGAGGAATGTGGCTCCCCTCGGGG-AGTGTTATAGCCA Pyronema_domesticum_NG_027655 GGGATAAAAGGCAGAGGAATGTGGCTCTCTTCGGGG-AGTGTTATAGCCT Wilcoxina_mikolae_DQ220468 GGGATAAAAGGGTGAGGAATGTGGCTTCCTTCGGGG-AGTGTTATAGCTT G._pinyonensis3 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG GeoSun3_LROR CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG G._pinyonensis_5 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG GeoSun5_LROR CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_typeE_HQ630382 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_typeJ_HQ630383 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_typeK_HQ630384 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_typeZ_HQ630385 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_typeC_HQ630381 CCTCCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_arenicola_DQ220336 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_arenicola_DQ220337 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_sp_DQ220338 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_clausa_DQ220339 CCTTCACAATGCCACCAGTTGGGATCGAGGACCGCGCTTCGGCTAGGATG Geopora_sp_DQ223973 CCTTCACAATGCCGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_cf_cervina_DQ220344 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_pellita_DQ220343 CCTTCACAATGCCATCGGTCGGGACCGAGGACCGCGCTTCGGCCAGGATG Pyronemataceae_sp_GQ281477 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_cercocarpi_HQ283091 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_cercocarpi_HQ283098 CCTTCACAATGCTGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_sp_DQ220345 CCTTCACAATGCCGCCAGTTGGGACCGAGGACCGCGTTTCGGCTAGGATG Geopora_cooperi_f._gilkeyae_DQ220342 CCTTCACAATGCTACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_cooperi_DQ220340 CCTTCACAATGCTACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Geopora_cooperi_DQ220341 CCTTCACAATGCTACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Pyronema_domesticum_NG_027655 CTGTCATAATGCCGCCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG Wilcoxina_mikolae_DQ220468 CGCTCACAATGCCACCAGTTGGGACCGAGGACCGCGCTTCGGCTAGGATG G._pinyonensis3 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC GeoSun3_LROR CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC G._pinyonensis_5 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC GeoSun5_LROR CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_typeE_HQ630382 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_typeJ_HQ630383 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_typeK_HQ630384 CTGGTGTAACGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_typeZ_HQ630385 CTGGCGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_typeC_HQ630381 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_arenicola_DQ220336 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_arenicola_DQ220337 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_sp_DQ220338 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_clausa_DQ220339 CTGGTGCAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_sp_DQ223973 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_cf_cervina_DQ220344 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_pellita_DQ220343 CTGGTGTAATGGGCTCAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Pyronemataceae_sp_GQ281477 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_cercocarpi_HQ283091 CTGGTGTAATGGTCTTAAGCGACCCGTCT--------------------- Geopora_cercocarpi_HQ283098 CTGGTGTAATGGTCTTAAGCGACCCGTCT--------------------- Geopora_sp_DQ220345 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_cooperi_f._gilkeyae_DQ220342 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_cooperi_DQ220340 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Geopora_cooperi_DQ220341 CTGGTGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Pyronema_domesticum_NG_027655 CTGGCATAAAGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC Wilcoxina_mikolae_DQ220468 CTGGCGTAATGGTCTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTC G._pinyonensis3 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT GeoSun3_LROR TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT G._pinyonensis_5 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT GeoSun5_LROR TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_typeE_HQ630382 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_typeJ_HQ630383 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_typeK_HQ630384 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_typeZ_HQ630385 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_typeC_HQ630381 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_arenicola_DQ220336 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATTAAAGT Geopora_arenicola_DQ220337 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATTAAAGT Geopora_sp_DQ220338 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATTAAAGT Geopora_clausa_DQ220339 TAACATCTATGCGAGTGTTCGGGCGGAAAACCCTTGCGCGTAATGAAAGT Geopora_sp_DQ223973 TAACATCTATGCGAGTGTTCGGGCGGAAAACCCTTGCGCGTAATTAAAGT Geopora_cf_cervina_DQ220344 TAACATCTATGCGAGTGTTCGGGCGGAAAACCCTTGCGCGTAATTAAAGT Geopora_pellita_DQ220343 TAACATCCATGCGAGTGTTTGGGTGGAA?ACCCTCACGCGCAATGAAAGT Pyronemataceae_sp_GQ281477 TAACATCTATGCGAGTGTTTGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_cercocarpi_HQ283091 -------------------------------------------------- Geopora_cercocarpi_HQ283098 -------------------------------------------------- Geopora_sp_DQ220345 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_cooperi_f._gilkeyae_DQ220342 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_cooperi_DQ220340 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Geopora_cooperi_DQ220341 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Pyronema_domesticum_NG_027655 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT Wilcoxina_mikolae_DQ220468 TAACATCTATGCGAGTGTTCGGGTGGAAAACCCTTGCGCGTAATGAAAGT G._pinyonensis3 GAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCG GeoSun3_LROR GAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCG G._pinyonensis_5 GAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCG GeoSun5_LROR GAACGGAGGTGTGA-ACCCT---TTGCCG-----GGCGCAACATCGACCG Geopora_typeE_HQ630382 GAACGGAGGTGTGA-ACCCT---TTGCGG-----GGCGCAACATCGACCG Geopora_typeJ_HQ630383 GAACGGAGGTGTGA-ACCCT---TTACTGTACGGGGTGCAACATCGACCG Geopora_typeK_HQ630384 GAACGGAGGTGTGA-ACCCT---TCGCGG-----GGTGCAACATCGACCG Geopora_typeZ_HQ630385 GAACGGAGGTGTGA-ACCCT---TTGCGG-----GGCGCAACATCGACCG Geopora_typeC_HQ630381 GAAAGGAGGTGTGA-ACCCT---TCGCGG-----GGTGCAACATCGACCG Geopora_arenicola_DQ220336 GAACGGAGGTGTGA-ACCCC---TTGCGG-----GGTGCAACATCGACCG Geopora_arenicola_DQ220337 GAACGGAGGTGTGA-ACCCC---TTGCGG-----GGTGCAACATCGACCG Geopora_sp_DQ220338 GAACGGAGGTGTGA-ACCCC---TTGCGG-----GGTGCAACATCGACCG Geopora_clausa_DQ220339 GAACGGAGGTGTGA-ACCCC---TTACGG-----GGCGCAACATCGACCG Geopora_sp_DQ223973 GAATGGAGGTGTGA-ACTCCGGATTGCCG----GGGTGCAACATCGACCG Geopora_cf_cervina_DQ220344 GAATGGAGGTGTGA-ACTCCGGATTGCCG-----GGTGCAACATCGACCG Geopora_pellita_DQ220343 GAACTGAGGTGTGA-ACCCT---TTGCCG-----GGTGCAACATCGACCG Pyronemataceae_sp_GQ281477 GAACGGAGGTGTGA-ACCCT---TCGCGG-----GGCGCAACATCGACCG Geopora_cercocarpi_HQ283091 -------------------------------------------------- Geopora_cercocarpi_HQ283098 -------------------------------------------------- Geopora_sp_DQ220345 GAACGGAGGTGTGA-ACCCT---TTGCGG-----GGTGCAACATCGACCG Geopora_cooperi_f._gilkeyae_DQ220342 GAACGGAGGTGTGA-ACCCT---TTACGG-----GGTGCAACATCGACCG Geopora_cooperi_DQ220340 GAACGGAGGTGTGA-ACCCT---TTACGG-----GGTGCAACATCGACCG Geopora_cooperi_DQ220341 GAACGGAGGTGTGA-ACCCT---TTGCCG-----GGTGCAACATCGACTG Pyronema_domesticum_NG_027655 GAACGGAGGTGGGA-ACTCT---TCGGAG-------TGCACCATCGACCG Wilcoxina_mikolae_DQ220468 GAACGGAGGTGGGA-ACCCG---CAAGGG-------TGCACCATCGACCG G._pinyonensis3 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC GeoSun3_LROR GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC G._pinyonensis_5 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC GeoSun5_LROR GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_typeE_HQ630382 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_typeJ_HQ630383 GTCCTGATGTCTTCGGATGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_typeK_HQ630384 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_typeZ_HQ630385 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_typeC_HQ630381 GTCCCGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_arenicola_DQ220336 GTCCTGATGTCTTCGGAGGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_arenicola_DQ220337 GTCCTGATGTCTTCGGAGGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_sp_DQ220338 GTCCTGATGTCTTCGGAGGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_clausa_DQ220339 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_sp_DQ223973 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_cf_cervina_DQ220344 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_pellita_DQ220343 GTCCCAAAGATTTCGGAAGGATCCGAGTAAGAGCATGGCTGTTGGGACCC Pyronemataceae_sp_GQ281477 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_cercocarpi_HQ283091 -------------------------------------------------- Geopora_cercocarpi_HQ283098 -------------------------------------------------- Geopora_sp_DQ220345 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_cooperi_f._gilkeyae_DQ220342 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_cooperi_DQ220340 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Geopora_cooperi_DQ220341 GTCCTGATGTCTTCGGAAGGATCTGAGTAAGAGCATAGCTGTTGGGACCC Pyronema_domesticum_NG_027655 ATCCTGATGTTTTCGGAAGGATTTGAGTAAGAGCATAGCTGTTGGGACCC Wilcoxina_mikolae_DQ220468 ATCCTGATGTCTTCGGAAGGATTTGAGTAAGAGCATAGCTGTTGGGACCC G._pinyonensis3 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT GeoSun3_LROR GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT G._pinyonensis_5 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTTT GeoSun5_LROR GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTTT Geopora_typeE_HQ630382 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_typeJ_HQ630383 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_typeK_HQ630384 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_typeZ_HQ630385 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_typeC_HQ630381 GAAA?GATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_arenicola_DQ220336 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_arenicola_DQ220337 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_sp_DQ220338 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_clausa_DQ220339 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_sp_DQ223973 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_cf_cervina_DQ220344 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_pellita_DQ220343 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Pyronemataceae_sp_GQ281477 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_cercocarpi_HQ283091 -------------------------------------------------- Geopora_cercocarpi_HQ283098 -------------------------------------------------- Geopora_sp_DQ220345 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_cooperi_f._gilkeyae_DQ220342 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_cooperi_DQ220340 GAAAG-ATGGTGAACTATCGCCTGAATAGGGTGAAGCCAGAGGAAACTCT Geopora_cooperi_DQ220341 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Pyronema_domesticum_NG_027655 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT Wilcoxina_mikolae_DQ220468 GAAAG-ATGGTGAACTAT-GCCTGAATAGGGTGAAGCCAGAGGAAACTCT G._pinyonensis3 G GeoSun3_LROR G G._pinyonensis_5 G GeoSun5_LROR G Geopora_typeE_HQ630382 G Geopora_typeJ_HQ630383 G Geopora_typeK_HQ630384 G Geopora_typeZ_HQ630385 G Geopora_typeC_HQ630381 G Geopora_arenicola_DQ220336 G Geopora_arenicola_DQ220337 G Geopora_sp_DQ220338 G Geopora_clausa_DQ220339 G Geopora_sp_DQ223973 G Geopora_cf_cervina_DQ220344 G Geopora_pellita_DQ220343 G Pyronemataceae_sp_GQ281477 G Geopora_cercocarpi_HQ283091 - Geopora_cercocarpi_HQ283098 - Geopora_sp_DQ220345 G Geopora_cooperi_f._gilkeyae_DQ220342 G Geopora_cooperi_DQ220340 G Geopora_cooperi_DQ220341 G Pyronema_domesticum_NG_027655 G Wilcoxina_mikolae_DQ220468 G ; END; BEGIN TREES; Title 'Trees from "GEOPORALSU.nxs.con.tre"'; LINK Taxa = Taxa; TRANSLATE 1 G._pinyonensis3, 2 GeoSun3_LROR, 3 G._pinyonensis_5, 4 GeoSun5_LROR, 5 Geopora_typeE_HQ630382, 6 Geopora_typeJ_HQ630383, 7 Geopora_typeK_HQ630384, 8 Geopora_typeZ_HQ630385, 9 Geopora_typeC_HQ630381, 10 Geopora_arenicola_DQ220336, 11 Geopora_arenicola_DQ220337, 12 Geopora_sp_DQ220338, 13 Geopora_clausa_DQ220339, 14 Geopora_sp_DQ223973, 15 Geopora_cf_cervina_DQ220344, 16 Geopora_pellita_DQ220343, 17 Pyronemataceae_sp_GQ281477, 18 Geopora_cercocarpi_HQ283091, 19 Geopora_cercocarpi_HQ283098, 20 Geopora_sp_DQ220345, 21 Geopora_cooperi_f._gilkeyae_DQ220342, 22 Geopora_cooperi_DQ220340, 23 Geopora_cooperi_DQ220341, 24 Pyronema_domesticum_NG_027655, 25 Wilcoxina_mikolae_DQ220468; TREE 'con 50 majrule+' = (24:0.03790606206061639,25:0.05983110730777258,((((((((1:0.001049288965033044,2:0.001100648771058702,3:0.001104171952254287,4:0.00267836824401948):0.002769104495182418,5:0.001153097239648234):0.006292099786487888,8:0.003175762882636071):0.003970581387315333,17:0.00476365295478595):0.004384771585412448,7:0.01638273242807722,((9:0.02576462487406244,20:0.01186974338385234):0.005732117024241277,(18:0.001511217554110991,19:0.001397428368243649):0.005736489278194677,((21:0.001206585722943815,22:0.002687093033208549):0.007900379551915162,23:0.009805905613668533):0.03113713701716152):0.004587103768920879):0.003400342586914687,6:0.02047923937662802):0.007576847437893047,((((10:0.001065375793122362,11:0.001081451805067146):0.007128317589966384,12:0.004853172423975142):0.01718628837999428,13:0.02754441780450111):0.008470516389134729,(14:0.005809071120356878,15:0.004315594296431717):0.01389681604035361):0.006177851718650462):0.02484406516532232,16:0.1499587976348784):0.07750061659709263); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 801; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 801; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 801; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1385332611174; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1547595448051947777; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9143504497284203472; mqVersion 275; checksumv 0 3 75732670 null getNumChars 801 numChars 801 getNumTaxa 25 numTaxa 25 short true bits 15 states 15 sumSquaresStatesOnly 385507.0 sumSquares 385507.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 721; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1547595448051947777 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1547595448051947777; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 654; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1547595448051947777 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 831.1368229456371.8964888591511463738; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 654; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors off; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setFontSize 14; setColor Black; toggleColorPartition off; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames on; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((24:0.03790606206061639,25:0.05983110730777258)100:0.03875030829854632,(16:0.1499587976348784,(((14:0.005809071120356878,15:0.004315594296431717)99:0.01389681604035361,(13:0.02754441780450111,(12:0.004853172423975142,(10:0.001065375793122362,11:0.001081451805067146)99:0.007128317589966384)100:0.01718628837999428)95:0.008470516389134729)54:0.006177851718650462,(6:0.02047923937662802,(7:0.01638273242807722,(17:0.00476365295478595,(8:0.003175762882636071,(5:0.001153097239648234,(1:0.001049288965033044,3:0.001104171952254287)97:0.002769104495182418)99:0.006292099786487888)90:0.003970581387315333)99:0.004384771585412448,((9:0.02576462487406244,20:0.01186974338385234)81:0.005732117024241277,(18:0.001511217554110991,19:0.001397428368243649)94:0.005736489278194677,(23:0.009805905613668533,(21:0.001206585722943815,22:0.002687093033208549)99:0.007900379551915162)100:0.03113713701716152)64:0.004587103768920879)51:0.003400342586914687)85:0.007576847437893047)92:0.02484406516532232)99:0.03875030829854632);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #9143504497284203472 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 654; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;