#NEXUS [written Mon Dec 09 15:23:33 CET 2013 by Mesquite version 2.75 (build 566) at EUGLENA01/10.7.0.57] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=41; TAXLABELS Alexandrium_catenella Amphidinium_carterae Asterionella_glacialis_MATX Aureococcus_anophagefferens_MATX Cylindrotheca_closterium_MATX Dendroctonus_frontalis_MATX Detonula_confervacea_MATX Ditylum_brightwellii_MATX Emiliania_huxleyi Euglena_clara Euglena_gracilis Euglena_hiemalis Euglena_proxima Euglenaria_anabaena Euglena_stellata Euglena_viridis Eutreptia_viridis Eutreptiella_braarudii Eutreptiella_gymnastica Heterocapsa_triquetra Isochrysis_galbana Karenia_brevis 'Karenia brevis_' Karlodinium_veneficum Lactuca_serriola_MATX Lepocinclis_playfairiana Lepocinclis_tripteris Lingulodinium_polyedrum Monomorphina_aenigmatica Monomorphina_parapyrum Monomorphina_pyrum_MATX Phacus_inflexus Phacus_orbicularis_MATX Prymnesium_parvum Skeletonema_costatum Strombomonas_accuminata Thalassionema_nitzschioides Thalassiosira_pseudonana_MATX Trachelomonas_ellipsoidalis Trachelomonas_sp Trachelomonas_volvocina ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=638; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Alexandrium_catenella ---------------PAMKKARTERVFLFSSESVNEGHPDKLCDQVSDAVLDACLTGDPKSKVACETATKDNMVMVAGEITTQTKIDYEKVVRGVVAKIGFDSYVDDLSSVDSKGLSDKTCEVLVRINKQSPDIAGGVHVGK----------EDLDVGAGDQGIMFGYAT-DETED-CMPLTHSVATKLGKKLTDVRKNGKLWWLRPDGKTQVTIEYLQKA-----DGSVEPQKFHTIVISTQHAEPSKATRRKECAG------YTGAD--ETAPSMDEMNRLIIEEVVKSTLSEVILKSGKPAISLFGDFT-HLHINPSGQFIIGGPQGDAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Amphidinium_carterae -------------------------TFLFSSESVNEGHPDKVCDQVSDAVLDTCLKGDPKSKVACETATKDNMVMVAGEITTQTKIDYEKVVRGVVEKIGFDSYVDDLASTESKGLSFKSCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETED-CMPLTHSMATRLGKKLTDVRKSGELWWLRPDGKTQVTIEYLMKD-----DGSVEPKKIHTVVISSQHANPGVATRKAEVAG------YTGPD--ETAPSMEEMNKLIVERVVKETLKEIKLKS-AAALTLFGDHT-HLYINPS-KFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYYCRQMAKSVVKSGLAARCLVQLSYAIGVAKPLSLFVETYGSEA--LSA--DDITNILKIEFDARPGAIAVALALREP---KYQETAAYCHFGREPYTKD-GIKFFEWENSKDLKK---------------------------------------------------------------------------------------------------------------------------------------------------------- Asterionella_glacialis_MATX -------------------------TFLFSSESVNEGHPDKLSDQVSDAVLDACLKEDPMSKVACETPTKDNMVMVFGEISTAATLDYESIVREQVREIGFDSFVDDLGSVDSKGLSCDTCEVLVRINKQSPDIAGGVHVGK----------SDLDVGAGDQGIMFGYAS-DETES-CMPLTHLLATKLGKQLTDVRKSGDLWWLRPDGKTQVTIEYKQHA-----DGSVEPTKIHTVVISTQHAEPSNAKRTEEQSGKDNRGAYTGEE--QIAPSMKEMNDLIHDHVVVKTLESITLKNTESALSIYDKETCNLHINPSGKFIISGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKAGLCKRACVQLSYAIGVAKPLSLFVETYGSEK--EGLTAQAITDIVKLNFDCRPGALARDLALREP---KYNKTAAYCHFGREPFVQD-GMRFFSWEEVVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Aureococcus_anophagefferens_MATX ---------MSAAVAKKQRVAAEERVFLFSSESVNEGHPDKVADQVSDAVLDACLTADPYSKVACETATKDNMVMVFGEITTKANLDYDAIVRNEVKKIGFDSFVDDLGSVDSKGLSCDSCEVLVRINKQSPDIAGGVHVG----------KSDLDVGAGDQGIMFGYAS-DETEN-CMPLTHLMATRLGKVLTEVRKDGSLWWLRPDGKTQVTIEYLQHS-----DGSVTPKMIHTVVISTQHAEPLKAKRTEEQNGKDFRGAYKGPE--QVAPSMADMNEAIHEHVVLATLKSITLKNGKPATSIYDRKTCNLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWSR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cylindrotheca_closterium_MATX -----------------------------------------LADQVSDAVLDACLKADPYPKVACETATKDNMVMVFGEITTAGKVDYEAIVREQVREIGFDSFVDDLGSVVSKGLNCDDCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETEN-CMPLTHMMATQLGKRLTDVRKDGSLWWLRPDGKTQVTIEYTQHS-----DGSVTPIKIHTVVISTQHAKPLKAKRTEEQAGRDNRGKYTGEE--MIAPSMEDTNEQIHEHVIVATLKSIKLKNGESALSIYKREECNLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKAGLCKRALVQLSYAIGVAKPLSLFVETYGT----EGLTAKLITDIVKINFDARPGALARDLTLREP---KYNKTAAYCHFGREPFTEN-GMKYFSWEDPVDLTK---------------------------------------------------------------------------------------------------------------------------------------------------------- Dendroctonus_frontalis_MATX --------------------------------------------QVSDAVLDACLKVDPKSKVACETATKDNMVMVAGEITTGAALDYDKVVRGVVEQIGFDSFVDDLSSVDSKGLSYKTCEV?GRINKQSPDIAGGVHVG?---------RTKMDVGAGDQGIMFGYAS-DETSD-CMPLTHSMATRLGKTL?RVRKSGECWWLRPDGKTQVTIEYMQHP-----DG-CEPKKIHTVVISTQHAEPSKAKRTQECAG------YTGAE--MVAPSMEQMNKEIEEKVIKRTLESIKLKNGKPAISLYGSHT-HLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYICRQMAKSVVNSGLSARCLVQLSYAIGVAKPLSLFVETYGSEK--GNLTVDDITSVLKIEFDCRPGAIAQSLALREP---KYQDTAAYCHFGREPVTKG-GIKFFEWENPKDLSKYKTMSTAQ-------------------------------------------------------------------------------------------------------------------------------------------------- Detonula_confervacea_MATX -------------------------SFLFSSESVNEGHPDKLCDQVSDAVLDACLAADPMSKVACETATKDNMVMVFGEISTAANLDYEKIVRDQVREIGFSSFVDDLSSVASKGLSCDTCEVLVRINKQSPDIAGGVH---------------MDVGAGDQGIMFGYAS-DETDC-HMPLTHLLANKLGKQLTDVRKDGSLWWLRPDGKTQVTIAYDQLA-----DGSVIPTEIHTVLISTQHAEPSKAKRTEEQDGKDNRPAYTGEE--QIAPSMAEMNTLIHDNVIVKTLEAITLKNGKSAFSIYNKETCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVAAGLCKRACVQLSYAIGVAKPLSLFVETYGT----EGLTAAAITDIVKLEFDCRPGALARDLKLREP---KYNKTAAYCHFGRKCFTDDAGKKFFSWEDPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Ditylum_brightwellii_MATX -------------------------TFLFSSESVNEGHPDKLSDQVSDAVLDACLKEDPMSKVACETATKDNMVMVFGEISTAATLDYESIVREQVREIGFDSFVDDLGSVDSKGLSCDTCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETES-CMPLTHLLATKLGKQLTNVRKSGDPWWLRPDGKTQVTIEYKQHA-----DGSVEPTKIHTVVISTQHAEPSNAKRTEEQSGKDNRGAYTGEE--QIAPSMKEMNDLIHDHVVVKTLESITLKNTESALSIYDKETCNLHINPSGKFIIGGPQGDAGLTGRKIIIDTHGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKAGLCKRACVQLSYAIGVAKPLSLFVETYGS----EGLTAQAITDIVKLNFDCRPGALARDLALREP---KYNKTAAYCHFGREPFVQD-GMRFFSWEEVVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Emiliania_huxleyi -------------------------IFMCSSESVNEGHPDKLADQVWDAGLDACLKEDPYSKVACETCTKDNMVMVFGEITTAAKLDYDKIVRNEVKKIGFDSFVDDLSSVDSKGLSCDSCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETES-CMPLTHLMATKLGKTLTDVRKDGSLWWLRPDGKTQVTIKYKQHT-----DGSVEPLMIHTVVISTQHAEPLKAKRTEEQPGTDFRGKYTGAE--QVAPSMEDMNEQIHEKVILATLKSIKLKNGKDATSIYNRGECNLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKSGLAKRACVQLSYAIGVAKPLSLFVETYGTE----ELTAAAITDLVKLYFDCRPGALARDLALRQP---KYNVTAAYCHFGREPYAEG-DLKFFSWEDAKDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Euglena_clara -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLTEDPKSKVACETAVKDNMVMVLGEITTQAKLDYDAIVRKAVRNIGFDSFVDDLSSVDSKGLSCDDCEVLVRINKQSPDIAGGVHVGR----------DEMDLGAGDQGIMFGYAS-DETQS-TMPLTHYLATRLGKTLTDVRKDGSLWWLRPDGKTQVTIKYKQCP-----DGSVEPLLIHTVLISTQHCEPGKRTKGEEIKG------YTGPDADLVAPSMEEMNELIIQHVVIRTLQDITLKNGQPALSIFDRNTCHLHMNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSKLAKRALVQLSYAIGVAKPLSIFVETYGSEQ--GALSADDITDIVKLAFDCRPGAIAKSLQLREP---KYVETAAYCHFGREPRTEN-GIKYFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Euglena_gracilis -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAQDPLSKVACETAVKDNMVMVLGEITTQAKLDYEAIVRTAVRNIGFDSFVDDLGSVDSKGLNCDDCEVLVRINKQSPDIAGGVH---------------MDVGAGDQGIMFGYAT-DETES-TMPLTHYLATRLGKTLTEVRKDGTLWWLRPDGKTQVTIKYKQCA-----DGAVEPLMIHTILISTQHCEPGKRKKGEEIKG------YKGADADEVAPSMDQMNELIIQHVVIRTLQNITLKNGQPAISIFDRNTCHLHMNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSKLARRALVQLSYAIGVAKPLSVFVETYGSE----VLTADDITDIVKLTFDCRPGAIGKALQLREP---KYVETAAYCHFGREPRTEN-GIKYFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Euglena_hiemalis -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAQDPLSKVACEAAVKDNMVMVLGEITTQAKLDYDAIVRNAVRNIGFDAFVDDLSSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DEMDVGAGDQGIMFGYAT-DETES-TMPLTHYVATRLGKTLTEVRKDGSLWWLRPDGKTQVTIKYKQCA-----DGAVEPLMIHTILISTQHVEPGKRKKGEELKG------YKGPDAEEVAPSMEQMNELMIQHVVIRTLENITLKNGKPAISIFDRSTCHLHMNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSKLARRALVQLSYAIAVAKPLSVFVETYGSEQ--GALTADDITDIVKLNFDCRPGAIAKSLQLREP---KYVESAAYCHFGREPRTEN-GIKYFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Euglena_proxima -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAVDPKSKVACETAVKDNMVMVLGEITTQAKLDYETIVRTAVRNIGFDSFIDDLSSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DEMDFGAGDQGIMFGYAS-DETKS-TMPLTHYLATRLGKTLTEVRKDGSLWWLRPDGKTQVTIKYRQCA-----DGSVEPLLIHTVLISTQHAEPGKRKKGEEIKG------YSGPDADELAPSMDKMNELIIQHVVIRTLQNITLKNGEPALSIFNRDTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVTSQLAKRALVQLSYAIGVAKPLSIFVETYGSEQ--GSLTADDITDIVKLAFDCRPGAIAKSLQLTEP---KYVETAAYCHFGREPRTEN-GIKFFEWENPVDLSA---------------------------------------------------------------------------------------------------------------------------------------------------------- Euglenaria_anabaena ---------------------------------VNEGHPDKLCDQVSDSVLDACLAQDPKSKVACETAVKDNMVMVLGEITTQAKLDYEKIVRTAVRNIGFDSFIDDLTSVESKGLDCDNCEVLVRINKQSPDIAGGVHVGR----------DDMDVGAGDQGIMFGYAT-DETQS-TMPLTHYMATRLGKTLTEVRKDGTLWWLRPDGKTQVTIKYRQCA-----DGSVEPLLIHTVLISTQHCEPAKRTKGEEIKG------YKGSDADEVAPSMEDMNELIVQHVVIRTLQNITLKNGKPALSIFDRNTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSNLARRALVQLSYAIGVAKPLSVFVETYGSEQ--GDLTAADITDIVKLAFDCRPGAIGKSLQLREP---KYTETAAYCHFGREPRVEG-TIKFFEWERPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Euglena_stellata -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAQDPKSKVACETAVKDNMVMVLGEITTQAKLDYEAIVRQAVRNIGFDSFVDDLASVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGK----------DEMDVGAGDQGIMFGYAS-DETKS-TMPLTHYMATRLGKTLTEVRKNGTLWWLRPDGKTQVTIKYKQCA-----DGSVEPLMIHTVLISTQHSEPGKRTKGEEIRG------YKGADAGEVAPSMEQMNELIIQHVVVKTLEEITLKNGQSALSIFDRNTCHLHINPSGRFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSGLAKRVLVQLSYAIAVAKPLSVFVETYGSEQ--GALTADDITDIVKLNFDCRPGAIAKSLQLREP---KYTESAAYCHFGREPRTEN-GIKYFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Euglena_viridis -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAQDPKSKVACETAVKDNMVMVLGEITTQAKLDYEAIVRKAVRNIGFDSFVDDLSSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DELDFGAGDQGIMFGYAT-DETKS-TMPLTHYLATRLGKTLTDVRKDGTLWWLRPDGKTQVTIKYKQCA-----DGSVEPLLIHTVLISTQHCEPSKRTKGEEIKG------YKGEDAGEVAPSMDQMNELIIQHVVIRTLQDITLKNGQPALSIFDRNTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYTTRQIAKSIVVSKLAKRALVQLSYAIGVAKPLSIFVETYGSEQ--GALTADDITDIVKLAFDCRPGAIAKSLQLTEP---KYVESAAYCHFGREPRTEN-GIKFFEWENPVDLSS---------------------------------------------------------------------------------------------------------------------------------------------------------- Eutreptia_viridis -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLKEDPLSKVACETAVKDNMVMVLGEITTKAKLDYEAIVRKAVRNIGFDSFVDDLASVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DEMDVGAGDQGIMFGYAT-DETKS-TMPLTHYLATKLGKTLTDVRKSGELWWLRPDGKTQVTIKYKQCA-----DGSVEPLMIHTILISTQHAEPMKRTKGAEIAG------YKGADSGETAPSMEKMNELIVEYVVKRTLKEITLKNGEPALSIFDEKTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQMAKSIVTSGLAKRALVQLSYAIGVAKPLSIFVETYGSEL--GELTADDITDVIKLAYDCRPGAIAKHLQLTEP---KYVETAAYCHFGREPRTEN-GIKYFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Eutreptiella_braarudii -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLTADPLSKVACETAVKDNMVMVLGEITTGAKLDYEAIVRKACRHIGFDSYVDDLSSVESKGLNCDDCEVLVRINAQSPDIAGGVHVGR----------DEMDVGAGDQGIMFGYAS-DETKS-TMPLTHYLATKLGKTLTDVRKNGKLWWLRPDGKTQVTIKYKQHA-----DGSVEPLMIHTVLISTQHAEPLKRTKGAEIAG------YKGADAGEVAPSMEDMNKQILEQVIKATLRDITLKNGKPAISIFDEKTCHTHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQMAKSIVTSGLAKRALVQLSYAIGVAKPLSVFVETYGSEQ--GALTADDITDVIKLAFDCRPGAIAKSLALREP---KYVESAAYCHFGREPRTEN-GIKYFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Eutreptiella_gymnastica ------------------------REFLFSSESVNEGHPDKLCDQVSDSVLDACLTSDPLSKVACETAVKDNMVMLCGEITTEAKLDYEAIVRKAVKNIGFDSYVDDMSSVDSKGINCDDCEVIIRINKQSPDIAGGVHVGR----------DEMDVGAGDQGIMFGYAT-DETQT-TMPLTHYMATLLGKTLTDVRKSGQLWWLRPDGKTQVTIKYKQHA-----DGSVEPLSIHTVLISTQHAEPSKRTKGDEIKG------YKGADAGEVAPTMAEMNELIIEHVIIATLKAITLKNGQPALSIFDRETCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQMAKSIVTSGLAKRALVQLSYAIGVAKPLSLFVETYGSEQ--GDLTPEDITDVVKMSFDCRPGAIAKSLQLREP---KYVETAAYCHFGREPREED-GKKFFEWERPHDLSKYAKMASADVKAEAAANKAAILAKWVDFLKLTQRKAKSTPCGIMHVHRYLRKLVYTSSRNMGCHSQITEGDFVRYKLSKLVLPPCLCHERAFGPFIYFNNGPGDHTLCEQVQVGVREDRSKFSQRLLPWSSLYQLLLIKFIETFLHLRPDVSSGA Heterocapsa_triquetra -------------------------VFLFSSESVNEGHPDKICDQVSDAVLDACLAADPKSKVACETATKDNMVMVAGEITTQAKLDYDKVVRGVVAGIGFDSYVDDLSSVDSKGLSDKTCEVLVRINKQSPDIAGGVH---------------MDVGAGDQGIMFGYAS-DETED-CMPLTHSMATRLGKTLTDVRKSGELWWLRPDGKTQVTIEYLQKA-----DGSVEPRKIHTVVISTQHAEPLKAVRSKECAG------YKGAE--MTAPSMEDMNKAIVEHVVKRTLREIKLKNGEAALTLFGDHT-HLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHG----------------------------------------------------------TE----ALTADDITNVIKMEFDARPGAIAVSLALREP---KYQETAAYCHFGREPYTKE-GRKYFEWENAKDLAK---------------------------------------------------------------------------------------------------------------------------------------------------------- Isochrysis_galbana -------------------------IFLFSSESVNEGHPDKVADQVSDAVLDACLTADPYSKVACETCTKDNMVMVFGEITTTAKLDYDKIVRNEVKKIGFDSFVDDLSSVDSKGLSCDSCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETES-AMPLTHLMATQLGKTLTDVRKDGTLWWLRPDGKTQVTIKYKQHT-----DGSVEPLMIHTVVIST---------------------------------------------------------------------------------IIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKAGLTKRACVQLSYAIGVAKPLSLFVETYGTE----DLSAAAITDIVKMHFDCRPGALARDLKLRQP---KY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Karenia_brevis -------------------------TFLFSSESVNEGHPDKLCDQVSDAVLDACLTEDPKSKVACETATKDNMVMVAGEITTQSKLDYEKIVRGVVKQIGFDSFVDDLSSVDSKGLSDKTCEVIVRINKQSPDIAGGVH---------------MDVGAGDQGIMFGYAS-DETED-CMPLTHSMATRLGKKLTDVRKSGKLWWLRPDGKTQVTIEYLQKA-----DGSVEPQKIHTVVISTQHAEPCKATRCKECAG------YAGPD--MTAPRMEEMNKLIVEEVIKETLKEITLKNGQPALTLFGDHT-HLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYICRQMAKSVVKSGLCKRALVQLSYAIGVAKPLSLFVETYGTE----ALTADDITKIVKIEFDCRPGAIALSLALREP---KYQETAAYCHFGRQAVTKD-GIKFFEWENAKDVSK---------------------------------------------------------------------------------------------------------------------------------------------------------- 'Karenia brevis_' -------------------------TFLFSSESVNEGHPDKLCDQVSDAVLDACLTEDPKSKVACETATKDNMVMVAGEITTQSKLDYEKIVRGVVKQIGFDSFVDDLSSVDSKGLSDKTCEVIVRINKQSPDIAGGVHVGK----------DEMDVGAGDQGIMFGYAS-DETED-CMPLTHSMATRLGKKLTDVRKSGKLWWLRPDGKTQVTIEYLQKA-----DGSVEPQKIHTVVISTQHAEPLKAVRTKECAG------YTGEE--MTAPSMEEMNKLIVEEVIKETLKEITLKNGSPALTLFGDHT-HLHINPSGKFIIGGPQGDA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Karlodinium_veneficum -------------------------TFLFSSESVNEGHPDKLCDQVSDAVLDTCLTEDPKSKVACETATKDNMVAVMGEITTQAKIDYEKVVRGVVAKIGFDSFVDDLSSVDSKGLSDKTCEVIVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETED-CMPLTHSMATRLGKKLTDVRKNGKLWWLRPDGKTQVTIEYLQKA-----DGSVEPQKIHTVVISTQHAEPLKATRTKECAG------YSGPE--MTAPSMEDMNKLIVEEVIKETLKEITLKNGKPALTLFGDHT-HLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYICRQMAKSVVKSGLCKRALVQLSYAIGVAKPLSLFVETYETEN----LSAVDITNIIKIAFDCRPGAIAMSLALREP---KYQETAAYCHFGREAVTKN-GIKFFEWENAKDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Lactuca_serriola_MATX ------------------------------------------------------------------------------------------------RRIGFNSFVDDLSSTKSKGLDWRTCEVIVRINQQSPDIAGGVHVGR----------DPLEVGAGDQGIMFGYAS-DETAD-CMPLTHSMATRIGKRLTDVRKDGTLWWVRPDGKTQVTIRYRQNA-----DGSVEPLAIHTVLISTQHADPSVAKRSEEVEG--------YEGPEEIAPSKAEMDELLIQEVVIKTLESITLKNGQPATSIFDRKTCHVHMNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYMCRKMAKSIVSSGLARRALVQLSYAIGVAKPLSLYVDCYGSEQ--GGLSANDITNILKINFDCRPGAIAVDLNLRQP---KYVETAAYCHFGREPYDQG-EIQFFSWERAVDLSEWAGKSSEDVEAAIDKSRVAVLKKWVDSGLTEHFAYRELRDSASDHILVLCHRWILGSSRGRPVRVGRSFGVNHYALHIF--------------------------------------------------------------------------- Lepocinclis_playfairiana -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLREDPLSKVACETAVKDNMVMVLGEITTNAKLDYEKIVRDAVRNIGFDSFVDDLSSVDSKGLNCEDCEVLVRINKQSPDIAGGVHVGR----------DEMDVGAGDQGIMFGYAS-DETKS-TMPLTHYLATRLGKTLTEVRKSGQLWWLRPDGKTQVTIKYKQNA-----DGSVEPLLIHTVLISTQHCEPGKRKKGEEIKG------YKGADADDVAPSMEQMNELIIEHVIIKTLQDITLKNGKPALSIFDRSTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSVVASGLARRALVQLSYAIGVAKPLSIFVETYGSEQ--GKLTADDITDIVKLEFDCRPGAIAKSLQLREP---KYVETAAYCHFGREPRTEN-GIKYFAWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Lepocinclis_tripteris -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLKEDPKSKVACETAVKDNMVMVLGEITTQARLDYEKIVRTAVRNIGFDSFVDDLSSVDSKGLNCDTCEVLVRINKQSPDIAGGVHVGR----------DDMDFGAGDQGIMFGYAT-DETKS-TMPLTHYLATRLGKTLTEVRKNGTLWWLRPDGKTQVTIKYKQCK-----DGSVEPLMIHTVLISTQHCEPGKRKKGEEIKG------YTGADAGEVAPSMEQMNELIIQHVIIKTLQDITLKNGQPALTIFDRNTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQMAKSIVVSGLAKRALVQLSYAIGVAKPLSIFVETYGSEQ--GALTAADITDIVKLAFDCRPGAIAKSLQLTEP---KYVETAAYCHFGREPRTEN-GIKFFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Lingulodinium_polyedrum -------------------------VFLFSSESVNEGHPDKLCDQVSDAVLDTCLTGDVKSKVACETATKDNMVMVAGEITTQTKIDYEKVVRGVVAKIGFDSYVDDLSSVDSKGLSDKTCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAT-DETED-CMPLTHSVATKLGKKLTDVRKSGKLWWLRPDGKTQVTIQYLQKA-----DGSVEPQKFHTIVISTQHAEPSKAKRTKEVAG------YKGPE--ETAPSMEEMNKLIVEEVVKKTLSEILLKNGKPALTLYGDFT-HLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYICRQMAKSVVKSGLCKRALVQLSYAIGVAKPLSLFVETYGTEA----LTAEDITNVVKIAFDCRPGAIAMSLALREP---KYQETAAYCHFGREPYTKN-GIKFFEWENAKDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Monomorphina_aenigmatica -----------------------------------------------GLVLDACLAVDPLSKVACETAVKDNMVMVLGEITTQARLDYETIVRTAVRNIGFDSFIDDLSSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DEMDVEAGDQGIMFGYAS-DETQS-TMPLTHYLATRLGKTLTDVRKDGTLWWLRPDGKTQVTIKYRQCA-----DGSVEPLLIHTVLISTQHAEPGKRTKGAEIRG------YTGADANEVAPSMEEMNELIIQHVIISTLKGITLKNGSPALSLFDRSTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Monomorphina_parapyrum -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLKVDPKSKVACETAVKDNMVMVLGEITTQAKLDYEAIVRTAVRNIGFDSFVDDLSSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DDMDFGAGDQGIMFGYAT-DETQS-TMPLTHYLATRLGRTLTEVRKNGTLWWLRPDGKTQVTIKYRQCA-----DGSVEPLMIHTVLISTQHCEPGKRTKGAEIKG------YKGADAGEVAPSMEQMNELIIQHVVIRTLQDITLKNGKPALSIFDRKTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSRLAKRALVQLSYAIGVAKPLSIFVETYGSEM--GELTADDITDIVKLAFDCRPGAIAKSLQLTEP---KYTETAAYCHFGREPRTEN-GIKFFEWENPVDLSA---------------------------------------------------------------------------------------------------------------------------------------------------------- Monomorphina_pyrum_MATX --------------------------PREFDEQVSEGHPDKLCDQVSDSVLDACLKEDPLSRVACETAVKDNMLMVLGEITTQAKLDYEAIVRTAVRNIGFDSFVDDLSSVDSKDLNCDDCEVLVRINKQSPDIAGGVHVGR----------DEMDLGAGDQGIMFGYAS-DETQG-TMPLTHYLATRLGKTLTEVRKDGTLWWLRPDGKTQVTIKYKQCA-----DGSVEPLMIHTVLISTRHAEPGKRKKGEEIRG------YKGADADEVAPSMEQMNELLIQHVVIRTLQNITLKNGQPALSIFDRNVCHLHMNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phacus_inflexus -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAVDPKSKVACECAVKDNMVMVLGEITTQAKLDYEKIVRTAVRNIGFDSFVDDLSSVDSKGLNCDSCEVLVRINKQSPDIAGGVHVGR----------DELDFGAGDQGIMFGYAT-DETKS-TMPLTHYMATRLGKTLTDVRKNGTLWWLRPDGKTQVTIKYKQCA-----DGSVEPLMIHTVLISTQHCEPGKRKKGEEIQG------YTGPDANEVAPSMEEMNEQIIQHVIIKTLQDITLKNGQPALSIFDRKTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSKLAKRALVQLSYAIGVAKPLSIFVETYGTEQ--GDLTADDITDVVKLAFDCRPGAIAKSLQLTEP---KYVETAAYCHFGREPRTEN-GIKYFEWENPKDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Phacus_orbicularis_MATX ------------------------------------GHPDKLCDQVSDSVLDACLAVDPKSKVACETAVKDNMVMVLGEITTQAKLDYEKIVRTAVKNIGFDSFVDDLSSVDSKGLDHKTCEVLVRINKQSPDIAGGVHIGR----------DELDFGAGDQGIMFGYAS-DETKS-TMPLTHFLATRLGKTLTEVRKNGTLWWLRPDGKTQVTIKYKQCA-----DGSVEPLMIHTVLISTQHCEPGKRKKGEEIQG------YTGADAGEIAPTKEEMDELMIQHVVIKTLQDITLKNGQPALSIFDRNTCHLHMNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSNLARRALVQLSYAIGVAKPLSIFVETYGSEK--GDLTADDITDIVKLSFDCRPGAIAKSLQLTEP---KYVETAAYCHFGRDPRTEN-GIKFFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Prymnesium_parvum -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSIVKAGLCKRALVQLSYAIGVAKPLSLFVETYGTEM--GELTAQSITDIVKLNFDCRPGALARDLNLRQP---KYNATAAYCHFGRDPYTED-GKTFFAWENVIDLSKYASMSADAIANELASKKAEVLVKWVDTPPSLLHSAVAAERSSVCATKRTASREHAGSVSSCPRPAGNAQRTAWPAFSFLFCKCECTAWAAWMILRA---------------------------------------------------------- Skeletonema_costatum -----------------------------------------LCDQVSDAVLDACLKADPLSKVACETATKDNMVMVFGEISTAANLDYEKIVRDQVREIGFSSFVDDLSSVESKGLSCDNCEVLVRINKQSPDIAGGVH---------------MDVGAGDQGIMFGYAS-DETEC-CMPLTHLLANKLGKQLTDVRKDGSLWWLRPDGKTQVTIAYDQLA-----DGSVVPTKIHTVLISTQHAEPGKAKRTAEQDGKDNRPAYTGEE--QIAPTMAEMNDLIHDHVIVKTLESITLKNGETALSIYSRDDCHVHLNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRFAAYACRWMAKSVVAAGLAKRALVQLFYAIGVAKPLSLFVETYGTE---G-LTAAAITDIVKMEFDARPGALARDLQLREP---KYNVTAAYCHFGREPFTKD-GMKFFSWEDPVDLKK---------------------------------------------------------------------------------------------------------------------------------------------------------- Strombomonas_accuminata -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAQDPKSKVACETAVKDNMVMVLGEITTQAKLDYEAIVRKAVRNIGFDSFVDDLDSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DEMDLGAGDQGIMFGYAS-DETKS-TMPLTHYLATRLGKTLTEVRKDGTLWWLRPDGKTQVTIKYKQCA-----DGSVEPLQIHSVLISTQHVEPGKRKKKEEIRG------YQGADGDEVAPTMKEMNEHLIEHVVIRTLKGITLKNGESALSIFDRNTCHLYMNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVASKLAKRALVQLSYAIGVAKPLSIFVETYGSEQ--GALTADDVTDIVKLAFDCRPGAIAKSLQLTEP---KYTETAAYCHFGREPRTEN-GIKFFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Thalassionema_nitzschioides --------------------------------------------------------------------------MVFGEITTAGQIDYEKIVREQVKEIGFDSFEDDLGSVASKGLNCSDCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETEN-CMPLTHTLATQLGKRLTDVRKDGSCWWLRPDGKTQVTIEYKQHT-----DGSVEPLKIHTIVISTQHAEPLKAKRTEEQSGADNRPKYEGDE--QMAPSMEEMNNQIHDQVIVKTLESITLKSGKSALSIYSKEECNLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVKAGLCKRALVQLSYAIGVAKPLSIFVETYGTE---G-LTAKLITDIVKINFDARPGALARDLQLRQP---KYNKTAAYCHFGREPFEED-GKTYFSWEKVVDLSA---------------------------------------------------------------------------------------------------------------------------------------------------------- Thalassiosira_pseudonana_MATX -------------------------SFLFSSESVNEGHPDKLCDQVSDAVLDACLAADPMSKVACETATKDNMVMVFGEISTAAHLDYEKIVRDQVREIGFSSFVDDLSSVESKGLSCDTCEVLVRINKQSPDIAGGVH---------------LDVGAGDQGIMFGYAS-DETEC-CMPLTHLLANKLGKQLTDVRKDGTLWWLRPDGKTQVTIAYDQLA-----DGSVVPTKIHTVLISTQHAEPGKAKRTVEQDGKDNRGAYTGEE--QIAPSMAEMNELIHDYVIVKTLESIKLKSGESALSIYNRDECHLHLNPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWMAKSVVAAGLCKRALVQLSYAIGVAKPLSLFVETYGT----EGLTAQAITDIVKLEFDARPGALARDLVLREP---KYNKTAAYCHFGRESFVED-GKKFFSWEDPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Trachelomonas_ellipsoidalis -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAVDPKSKVACETAVKDNMVMVLGEITTQAKLDYEKIVRTAVRNIGFDSFVDDLSSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DDMDVGAGDQGIMFGYAT-DETQS-TMPLTHYLATRLGKTLTEVRKDGSLWWLRPDGKTQVTIKYKQCA-----DGSVEPLSIHTVLISTQHAEPGKRKKGEEIRG------YKGPDADEVAPSMEQMNELIIQHVVIRTLENITLKNGQPALSLFDRNSCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSKLAKRALVQLSYAIGVAKPLSIFVETYGSEQ--GALTASDITDIVKLAFDCRPGAIAKSLQLTEP---KYVETAAYCHFGREPRTEN-GIKYFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- Trachelomonas_sp -------------------------GRGNSIESVNEGHPDKLCDQVSDSVLDACLAVDPQSKMACETAVKDNMVMVLGEITTQARLDYETIVRGAVRNIGFDSFIDDLSSVDSKGMNCDDCEVLVRINKQSPDIAGGVHIGR----------DELDLGAGDQGIMFGYAT-DETQS-AMPLTHYLATRLGRTLTDVRKDGTLWWLRPDGKTQVTIKYRQHV-----DGPVEPLMIHTVLISTQHCEPGKRQKGVEIKG------YQGADANDVAPTMEQMNELIIQHVVVRTLENITLKNGRPALSIFDPKTCHLHINPTGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Trachelomonas_volvocina -------------------------EFLFSSESVNEGHPDKLCDQVSDSVLDACLAADPKSKVACETAVKDNMVMVLGEITTQAKLDYEKIVRSAVRNIGFDSFVDDLSSVDSKGLNCDDCEVLVRINKQSPDIAGGVHVGR----------DDMDVGAGDQGIMFGYAS-DETQS-TMPLTHYLATRLGKTLTDVRKNGTLWWLRPDGKTQVTIKYRQCA-----DGAVEPLMIHTVLISTQHAEPGKRTKGEEIRG------YKGADANEVAPSMDQMNELIIQHVVIRTLEDIKLKNGKPALSIFDRKTCHLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYITRQIAKSIVVSKLARRALVQLSYAIGVAKPLSVFVETYGSEQ--GSLTADDITDIVKLAFDCRPGAIAKSLQLTEP---KYVETAAYCHFGREPRTQN-GIKFFEWENPVDLSK---------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 638; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 638; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 638; END; BEGIN TREES; Title 'Trees from "MATX-besttreeRooted.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Alexandrium_catenella, 2 Amphidinium_carterae, 3 Asterionella_glacialis_MATX, 4 Aureococcus_anophagefferens_MATX, 5 Cylindrotheca_closterium_MATX, 6 Dendroctonus_frontalis_MATX, 7 Detonula_confervacea_MATX, 8 Ditylum_brightwellii_MATX, 9 Emiliania_huxleyi, 10 Euglena_clara, 11 Euglena_gracilis, 12 Euglena_hiemalis, 13 Euglena_proxima, 14 Euglenaria_anabaena, 15 Euglena_stellata, 16 Euglena_viridis, 17 Eutreptia_viridis, 18 Eutreptiella_braarudii, 19 Eutreptiella_gymnastica, 20 Heterocapsa_triquetra, 21 Isochrysis_galbana, 22 Karenia_brevis, 23 'Karenia brevis_', 24 Karlodinium_veneficum, 25 Lactuca_serriola_MATX, 26 Lepocinclis_playfairiana, 27 Lepocinclis_tripteris, 28 Lingulodinium_polyedrum, 29 Monomorphina_aenigmatica, 30 Monomorphina_parapyrum, 31 Monomorphina_pyrum_MATX, 32 Phacus_inflexus, 33 Phacus_orbicularis_MATX, 34 Prymnesium_parvum, 35 Skeletonema_costatum, 36 Strombomonas_accuminata, 37 Thalassionema_nitzschioides, 38 Thalassiosira_pseudonana_MATX, 39 Trachelomonas_ellipsoidalis, 40 Trachelomonas_sp, 41 Trachelomonas_volvocina; TREE tree_1 = ((34:0.03875683286196274,((4:0.07484513204472404,(9:0.05580294071960418,21:0.03478436800359325):0.021888131321302018):0.03943779474893028,((5:0.05151351656271852,37:0.07144919440675551):0.046667206801459415,((3:0.004989194174766176,8:0.007337437270373559):0.04073193591258728,((35:0.04230916838274401,38:0.02218020211087346):0.019951014536077172,7:0.03234357329344684):0.056212142413300414):0.030953041035985174):0.0460333974217344):0.030895944696249567):0.036789140206907336,(25:0.24678413323710086,(((18:0.06379369746102526,17:0.04818706926211869):0.01631738413006195,((26:0.0510051307818124,((16:0.02146194357713349,(10:0.03162934241397086,(((31:0.05863378149526488,(11:0.013764681573342319,12:0.045578863415702775):0.014019733601096263):0.003908373091328909,(((((40:0.08044442318814438,30:0.011871720780209927):0.009353582871261312,(29:0.06787442978104424,41:0.01672645388766264):0.014847954463002633):0.011934753353303351,(27:0.02156266142658836,(33:0.04466879809613683,32:0.028728075903750983):0.007228800723616369):0.013214506151126237):0.006989497157706914,(39:0.0158897364878704,13:0.04247853165086729):0.008015295937886302):0.005494127226665646,14:0.06146181158244507):0.005541701242780528):0.006341772124656864,36:0.06639782660234772):0.004999055566331789):0.007623687652024813):0.00482613541194743,15:0.047697149952702855):0.021438158256921858):0.02423015451796423,19:0.08892693226775478):0.007053602052714991):0.10841188771548022,((((22:0.021728998334569094,23:0.010079133175119659):0.013706244243561039,(((1:0.05440825444051456,28:0.023384608499709025):0.03421379764683957,2:0.11669798666161352):0.01660086260782978,24:0.022380150855668246):0.009996687038862695):0.02989165674051164,20:0.07116239730764706):0.02060037867013137,6:0.11304242370913437):0.11695136705970982):0.03164562810535887):0.0735782804138147); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1386599013900; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3519484322145193213; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6188306847742369544; mqVersion 275; checksumv 0 3 51689659 null getNumChars 638 numChars 638 getNumTaxa 41 numTaxa 41 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.61535831886244E14 sumSquares 1.61535831886244E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 248; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 496 126; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3519484322145193213 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3519484322145193213; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 193; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 452 397; setLocation 496 126; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3519484322145193213 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1475.1386598972650.5598636998767991307; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 452 397; setLocation 496 126; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;