#NEXUS [written Sat Sep 13 13:28:57 MDT 2014 by Mesquite version 2.75 (build 564) at donnatvcbook676.unm.edu/129.24.145.221] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=10; TAXLABELS Scytalidium_lignicola_Aurim1152 Scytalidium_lignicola_Olrim1071 Scytalidium_lignicola_L17 Scytalidium_lignicola_C24 Scytalidium_lignicola_I199 'Scytalidium lignicola CBS 233.57 (genus type)' 'Scytalidium hyalinum CBS 145.78 (species type)' Scytalidium_hyalinum_FMR_8343 Scytalidium_hyalinum_FMR_8342 Scytalidium_hyalinum_HM02 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=454; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Scytalidium_lignicola_Aurim1152 --TCATACCTTT--GTTGCTTTGGCAGGCCGCT-GGGCTTCGGCCTGGCC Scytalidium_lignicola_Olrim1071 --TCATACCTTT--GTTGCTTTGGCAGGCCGCT-GGGCTTCGGCCTGGCC Scytalidium_lignicola_L17 --TCATACCTTT--GTTGCTTTGGCAGGCCGCT-GGGCTTCGGCCTGGCC Scytalidium_lignicola_C24 --TCATACCTTT--GTTGCTTTGGCAGGCCGCT-GGGCTTCGGCCTGGCC Scytalidium_lignicola_I199 --TCATACCTTT--GTTGCTTTGGCAGGCCGCT-GGGCTTCGGCCTGGCC 'Scytalidium lignicola CBS 233.57 (genus type)' CTTCGTACCTTTTCGTTGCTTTGGCGGGCCGCTCAGGCTTCGGCCTGGCC 'Scytalidium hyalinum CBS 145.78 (species type)' -TACCCACCTCT--GTTGCTTTGGCGGGCCGC--GGTCCTCCGC--GGCC Scytalidium_hyalinum_FMR_8343 ----CCACCTCT--GTTGCTTTGGCGGGCCGC--GGTCCTCCGC--GGCC Scytalidium_hyalinum_FMR_8342 ----CCACCTCT--GTTGCTTTGGCGGGCCGC--GGTCCTCCGC--GGCC Scytalidium_hyalinum_HM02 -TACCCACCTCT--GTTGCTTTGGCGGGCCGC--GGTCCTCCGC--GGCC Scytalidium_lignicola_Aurim1152 ACCGGCTCCC-------GGGCTGGTGCGCGCCTGCCAGGGGACCTCTA-A Scytalidium_lignicola_Olrim1071 ACCGGCTCCC-------GGGCTGGTGCGCGCCTGCCAGGGGACCTCTA-A Scytalidium_lignicola_L17 ACCGGCTCCC-------GGGCTGGTGCGCGCCTGCCAGGGGACCTCTA-A Scytalidium_lignicola_C24 ACCGGCTCCC-------GGGCTGGTGCGCGCCTGCCAGGGGACCTCTA-A Scytalidium_lignicola_I199 ACCGGCTCCC-------GGGCTGGTGCGCGCCTGCCAGGGGACCTCTA-A 'Scytalidium lignicola CBS 233.57 (genus type)' ACCGGCTCCCCTGAAGGGGGCGGGTGCGCGCCTGCCAGAGGACCCCTCCA 'Scytalidium hyalinum CBS 145.78 (species type)' GCCCTCCGTCC----GGGGGGTGGCCAGCGCCCGCCAGAGGACCATCAAA Scytalidium_hyalinum_FMR_8343 GCCCTCCGTCC----GGGGGGTGGCCAGCGCCCGCCAGAGGACCATCAAA Scytalidium_hyalinum_FMR_8342 GCCCTCCGTCC----GGGGGGTGGCCAGCGCCCGCCAGAGGACCATCAAA Scytalidium_hyalinum_HM02 GCCCTCCGTCC----GGGGGGTGGCCAGCGCCCGCCAGAGGACCATCAAA Scytalidium_lignicola_Aurim1152 ACTCTGTTTGTCTGTGTCGTC-TGAGTATTATA--CAATCG-TTAAAACT Scytalidium_lignicola_Olrim1071 ACTCTGTTTGTCTGTGTCGTC-TGAGTATTATA--CAATCG-TTAAAACT Scytalidium_lignicola_L17 ACTCTGTTTGTCTGTGTCGTC-TGAGTATTATA--CAATCG-TTAAAACT Scytalidium_lignicola_C24 ACTCTGTTTGTCAGTGTCGTC-TGAGTATTATA--CAATCG-TTAAAACT Scytalidium_lignicola_I199 ACTCTGTTTGTCAGTGTCGTC-TGAGTATTATA--CAATCG-TTAAAACT 'Scytalidium lignicola CBS 233.57 (genus type)' ACTCTGTTTGTCAGTGTCGTC-TGAGTACTATAACCAATCG-TTAAAACT 'Scytalidium hyalinum CBS 145.78 (species type)' CTCCGGTCAGTGAACGTTGCCGTCTGAAAAACAATCAATAAACTAAAACT Scytalidium_hyalinum_FMR_8343 CTCCGGTCAGTGAACGTTGCCGTCTGAAAAACAATCAATAAACTAAAACT Scytalidium_hyalinum_FMR_8342 CTCCGGTCAGTGAACGTTGCCGTCTGAAAAACAATCAATAAACTAAAACT Scytalidium_hyalinum_HM02 CTCCGGTCAGTGAACGTTGCCGTCTGAAAAACAATCAATAAACTAAAACT Scytalidium_lignicola_Aurim1152 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_lignicola_Olrim1071 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_lignicola_L17 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_lignicola_C24 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_lignicola_I199 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT 'Scytalidium lignicola CBS 233.57 (genus type)' TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT 'Scytalidium hyalinum CBS 145.78 (species type)' TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_hyalinum_FMR_8343 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_hyalinum_FMR_8342 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_hyalinum_HM02 TTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAAT Scytalidium_lignicola_Aurim1152 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_lignicola_Olrim1071 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_lignicola_L17 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_lignicola_C24 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_lignicola_I199 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA 'Scytalidium lignicola CBS 233.57 (genus type)' GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA 'Scytalidium hyalinum CBS 145.78 (species type)' GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_hyalinum_FMR_8343 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_hyalinum_FMR_8342 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_hyalinum_HM02 GCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAA Scytalidium_lignicola_Aurim1152 CGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_lignicola_Olrim1071 CGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_lignicola_L17 CGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_lignicola_C24 CGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_lignicola_I199 CGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA 'Scytalidium lignicola CBS 233.57 (genus type)' CGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA 'Scytalidium hyalinum CBS 145.78 (species type)' CGCACATTGCGCCCCTCGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_hyalinum_FMR_8343 CGCACATTGCGCCCCTCGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_hyalinum_FMR_8342 CGCACATTGCGCCCCTCGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_hyalinum_HM02 CGCACATTGCGCCCCTCGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCA Scytalidium_lignicola_Aurim1152 TTTCAACCC-TCAAGCTCTGCTTGGTATTGGGCTACGCCATCGC------ Scytalidium_lignicola_Olrim1071 TTTCAACCC-TCAAGCTCTGCTTGGTATTGGGCTACGCCATCGC------ Scytalidium_lignicola_L17 TTTCAACCC-TCAAGCTCTGCTTGGTATTGGGCTACGCCATCGC------ Scytalidium_lignicola_C24 TTTCAACCC-TCAAGCTCTGCTTGGTATTGGGCTACGCCATCGC------ Scytalidium_lignicola_I199 TTTCAACCC-TCAAGCTCTGCTTGGTATTGGGCTACGCCATCGC------ 'Scytalidium lignicola CBS 233.57 (genus type)' TTTCAACCCCTCAAGCTCTGCTTGGTGTTGGGCCGCGCTGCTGCTCCGGC 'Scytalidium hyalinum CBS 145.78 (species type)' TTACAACCC-TCAAGCTCTGCTTGGTGTTGGGCACCGCCCTTCC---GCG Scytalidium_hyalinum_FMR_8343 TTACAACCC-TCAAGCTCTGCTTGGTGTTGGGCACCGCCCTTCC---GCG Scytalidium_hyalinum_FMR_8342 TTACAACCC-TCAAGCTCTGCTTGGTGTTGGGCACCGCCCTTCC---GCG Scytalidium_hyalinum_HM02 TTACAACCC-TCAAGCTCTGCTTGGTGTTGGGCACCGCCCTTCC---GCG Scytalidium_lignicola_Aurim1152 GGCAGGCCTTAAAATTAGT-GGCGGTGCCGTCTCGGCTCTAAGCGTAGTA Scytalidium_lignicola_Olrim1071 GGCAGGCCTTAAAATTAGT-GGCGGTGCCGTCTCGGCTCTAAGCGTAGTA Scytalidium_lignicola_L17 GGCAGGCCTTAAAATTAGT-GGCGGTGCCGTCTCGGCTCTAAGCGTAGTA Scytalidium_lignicola_C24 GGCAGGCCTTAAAATTAGT-GGCGGTGCCGTCTCGGCTCTAAGCGTAGTA Scytalidium_lignicola_I199 GGCAGGCCTTAAAATTAGT-GGCGGTGCCGTCTCGGCTCTAAGCGTAGTA 'Scytalidium lignicola CBS 233.57 (genus type)' GGCGGGCCCTAAAATCAGTTGGCGGTGCCGTCGCGGCTCCAAGCGTAGTA 'Scytalidium hyalinum CBS 145.78 (species type)' GGCGCGCCTCAAAGACCTC-GGCGGTGGCGTCTTGCCTC-GAGCGTAGTA Scytalidium_hyalinum_FMR_8343 GGCGCGCCTCAAAGACCTC-GGCGGTGGCGTCTTGCCTC-GAGCGTAGTA Scytalidium_hyalinum_FMR_8342 GGCGCGCCTCAAAGACCTC-GGCGGTGGCGTCTTGCCTC-GAGCGTAGTA Scytalidium_hyalinum_HM02 GGCGCGCCTCGAAGACCTC-GGCGGTGGCGTCTTGCCTC-GAGCGTAGTA Scytalidium_lignicola_Aurim1152 ACAA-TCTCTCGCTCTGGAGACCTGGCGGT-GCTTGCCAGACAACCACC- Scytalidium_lignicola_Olrim1071 ACAA-TCTCTCGCTCTGGAGACCTGGCGGT-GCTTGCCAGACAACCACC- Scytalidium_lignicola_L17 ACAA-TCTCTCGCTCTGGAGACCTGGCGGT-GCTTGCCAGACAACCACC- Scytalidium_lignicola_C24 ACAA-TCTCTCGCTCTGGAGACCTGGCGGT-GCTTGCCAGACAACCACC- Scytalidium_lignicola_I199 ACAA-TCTCTCGCTCTGGAGACCTGGCGGT-GCTTGCCAGACAACCACC- 'Scytalidium lignicola CBS 233.57 (genus type)' GCAAACCTCTCGCTCTGGAGACCCGGCGGTTGCCTGCCAGACAACCCCCC 'Scytalidium hyalinum CBS 145.78 (species type)' GAAAACACCTCGCTTTGGAGCGCACGGCGCCGCCCGCCGGACGAACCTTT Scytalidium_hyalinum_FMR_8343 GAAAACACCTCGCTTTGGAGCGC--------------------------- Scytalidium_hyalinum_FMR_8342 GAAAACACCTCGCTTTGGAGCGC--------------------------- Scytalidium_hyalinum_HM02 GAAAACACCTCGCTCTGGAGCGCACGGCGCCGCCCGCCGGCCGAACCTTT Scytalidium_lignicola_Aurim1152 ---- Scytalidium_lignicola_Olrim1071 ---- Scytalidium_lignicola_L17 ---- Scytalidium_lignicola_C24 ---- Scytalidium_lignicola_I199 ---- 'Scytalidium lignicola CBS 233.57 (genus type)' CCCG 'Scytalidium hyalinum CBS 145.78 (species type)' TG-- Scytalidium_hyalinum_FMR_8343 ---- Scytalidium_hyalinum_FMR_8342 ---- Scytalidium_hyalinum_HM02 TG-- ; END; BEGIN TREES; Title 'Trees from "ITS V12 Leotiomycetes dnapars single parsimony run June 26 2014 dnapars.outtree"'; LINK Taxa = Taxa; TRANSLATE 1 Scytalidium_lignicola_Aurim1152, 2 Scytalidium_lignicola_Olrim1071, 3 Scytalidium_lignicola_L17, 4 Scytalidium_lignicola_C24, 5 Scytalidium_lignicola_I199, 6 'Scytalidium lignicola CBS 233.57 (genus type)', 7 'Scytalidium hyalinum CBS 145.78 (species type)', 8 Scytalidium_hyalinum_FMR_8343, 9 Scytalidium_hyalinum_FMR_8342, 10 Scytalidium_hyalinum_HM02; TREE tree_1 = (((((9:0.0,8:0.0):0.05277,(10:0.00551,7:0.0011):0.02744):0.16887,6:0.0759):0.05387,5:0.0,4:0.0):0.0022,3:0.0,2:0.0,1:0.0); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 454; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 454; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 454; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1410636538073; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7244379618107797568; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8271860445716534026; mqVersion 275; checksumv 0 3 594957246 null getNumChars 454 numChars 454 getNumTaxa 10 numTaxa 10 short true bits 15 states 15 sumSquaresStatesOnly 89264.0 sumSquares 89264.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 336 99; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7244379618107797568 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7244379618107797568; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 250; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 336 99; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7244379618107797568 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1459.1409408571652.3234133606040884536; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 336 99; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((7:0.0011,10:0.00551):0.02744,(8:0.0,9:0.0):0.05277):0.084435,(6:0.0759,(4:0.0,5:0.0,(1:0.0,2:0.0,3:0.0):0.0022):0.05387):0.084435);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8271860445716534026 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 336 99; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;