#NEXUS [written Mon Dec 30 17:08:31 SGT 2013 by Mesquite version 2.75 (build 566) at Simba.local/192.168.1.9] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=37; TAXLABELS Cyclaneusma_minus_101y_4 Cyclaneusma_minus_102g_4 Cyclaneusma_minus_104_4 Cyclaneusma_minus_104_5 Cyclaneusma_minus_107_7 Cyclaneusma_minus_1062 Cyclaneusma_minus_300L_2c Cyclaneusma_minus_301H_3c Cyclaneusma_minus_303L_3c Cyclaneusma_minus_317B Cyclaneusma_minus_318 Cyclaneusma_minus_C348 Cyclaneusma_minus_DFR1224_10 Cyclaneusma_minus_DFR1224_6 Cyclaneusma_minus_DFR1226_1 Cyclaneusma_minus_DFR1226_5 Cyclaneusma_minus_DFR1227_1 Cyclaneusma_minus_DFR1227_4 Cyclaneusma_minus_DFR1228_5 Cyclaneusma_minus_DFR_1228_9 Cyclaneusma_minus_MC103y_3 Cyclaneusma_minus_MC103y_5 Cyclaneusma_minus_MC303L_1 Cyclaneusma_minus_MC303L_6B Strasseria_geniculata_MC7964_2 Cyclaneusma_niveum_N219 Cyclaneusma_minus_N226 Cyclaneusma_minus_N231 Strasseria_geniculata_NZFS506 Lophodermium_conigenum_NZFS781 Lophodermium_molitoris_NZFS789 Cyclaneusma_minus_O07_2 Cyclaneusma_minus_O08_1 Cyclaneusma_minus_PN0362 Cyclaneusma_minus_PN0363 Cyclaneusma_minus_SN8_5 Cyclaneusma_minus_V1A2_2b ; END; BEGIN CHARACTERS; TITLE mtLSU; DIMENSIONS NCHAR=449; FORMAT DATATYPE = DNA GAP = - MISSING = n; MATRIX Cyclaneusma_minus_101y_4 TAAGGTTGTATGTTTAAAGGGAAACAGCCCAGAACCAGGATTAAGGTTCCTAAATTAATGTTAAGGGAAATTAAGGTAGTTTTTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTTGTAACAGAGCCCTGGTTTAGTAAGTAGTTCCCTAT-TTACCTTGATAG-AAGCCCCGAAAATATATTGGATTTAAACAATATACCGACCCCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAGAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_102g_4 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGCAAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAAAGGTAGCAAAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_104_4 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAAGGCAGGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAAAGGTAGCAAAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_104_5 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAAGGCAGGCTGATCTTCTATAAAAATTTTAAGGCAAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAAAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_107_7 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGGGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAAAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_1062 TAAGGTTGTATGTCTAAGGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAAGGTTAAGGGAAATTAAGGTATTTTCTATTAAATACAACTAGAAAGTAGGCTTAAAAGCGGCCATTTTTTGAAGACCTCGTAACAAAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACCCCTTGTTCATGTTTATAAATAAAAAAAAAAA-TAAAGGGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_300L_2c TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGAAAATGCAGGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAAAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_301H_3c TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTTTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTTGTAACAGAGCCCTGGTTTAGTAAGTAGTTCCCTAT-TTACATTGATAG-AAGCCCCGAAAATATATTGGATTTAAACAATATACCGACCCCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAGAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_303L_3c nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAATGTnAAGTGAAATnAAGGTAGTTnCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_317B TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTTTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCCTTTTTTGAAGACCTCGTAACAGAGCCCTGGTTTAGTAAGTAGTTCCCTAT-TTACATTGATAG-AAGCCCCGAAAATATATTGGATTTAAACAATATACCGACCCCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAGAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_318 TAnGGT-GTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTnCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTnGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATGGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_C348 nnnnnnTGTATGTCTAAAGGGAAACAGCCCAGAACA-GAGTTAAGGT-CCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_DFR1224_10 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_DFR1224_6 TAAGGTnGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_DFR1226_1 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAAAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAAAAGCGGCCATTTTTTGAAGACCTCGTAACAAAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGGGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_DFR1226_5 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAAAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAAAAGCGGCCATTTTTTGAAGACCTCGTAACAAAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGGGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_DFR1227_1 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAAAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAAAAGCGGCCATTTTTTGAAGACCTCGTAACAAAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_DFR1227_4 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAAAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAAAAGCGGCCATTTTTTGAAGACCTCGTAACAAAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGGGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_DFR1228_5 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAAAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAAAAGCGGCCATTTTTTGAAGACCTCGTAACAAAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGGGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-AAGAAGGCTAACCT Cyclaneusma_minus_DFR_1228_9 TAAGATnGGATGTCTAAAGGGAAACAGCCCAGAACA-GAGTTAAGGT-CCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTAT-GAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTT-GAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAGCAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTACCCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_MC103y_3 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAAGGCATGCTGATCTTCTATAAAAATTTTAAGGGGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAGAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_MC103y_5 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAAGGCAGGCTGATCTTCTATAAAAATTTTAAGGGGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAAAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_MC303L_1 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAAAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_MC303L_6B TAAGGTTGTATGTCTAAAGGGAAACAGCCCAAAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Strasseria_geniculata_MC7964_2 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCAAAATTATTGTTAAGTGAAATTAAGGAAGTTAATATTTTATACGACTAGGAAATAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAATTAATTTAAAT-TTATATATATAT-TCGCACCGAAAATTTAACGGATCTAAACAATATACCGACACCTTGTCCACACT-nnTATAATAGTAAA-nn-TATTA-nn-TTATAATTGGTGGGGTAGCAGAACGTTGGGTAAATCTTAGACTTATTCTTTTTAAG-nATTA-ATGAT-nn--TAGA--TAACCCAAGTGAGAA-nTGCTGACATGAGTAAC-nnnnGAAAAAGGGAAn-TCATATCCCTCGCCTAAAGCTTATGGATTTATATAAAGTAACGGCCTCTAAGT Cyclaneusma_niveum_N219 TAGGGTTGAAGGCCTAAGGGGAAACAGCCCAAAACAAGAGTTAGGGTCCCTAAATTAAGGTTAAGGGAAATTAGGGTAGTTTCTTTTAAATACAACTAGAAGGTAGGTTTAAAAGGGGCCTTTTTTTGAAAACCCCGTAACAAAGCACGGGTTTAGAAAGTAGTTAACTTT-TTACTTGGATAA-AAGCCCCGAAAATATTTCGAATCTAAACAATATCCCGACCCCTTGTTCAGGTTTATAAATAAAGAAAAAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCTAAACCAAAAAGAGCAGGCGGTTGGCCAGCAGGCAGGCAACGGCTGGCTGGTA-ACCCAGCAGGCAGCCCCTTTTTn-TTAAATCAGGGGAAGGGTTTTGCCCTTGACAGTAAGGGA--AAGGCTTTGCCCT Cyclaneusma_minus_N226 TAAGnTTGTATGTCTAAAGGGAAACAGCCCAGAACA-GAGTAAAGGT-CCTAAATTAATGTTAAGTGAA-TTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTT-GAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Cyclaneusma_minus_N231 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGT-CCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT Strasseria_geniculata_NZFS506 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCAAAATTATTGTTAAGTGAAATTAAGGAAGTTAATATTTTATACGACTAGGAAATAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAATTAATTTAAAT-TTATATATATAT-TCGCACCGAAAATTTAACGGATCTAAACAATATACCGACACCTTGTCCACACT-nnTATAATAGTAAA-nn-TATTA-nn-TTATAATTGGTGGGGTAGCAGAACGTTGGGTAAATCTTAGACTTATTCTTTTTAAG-nATTA-ATGAT-nn--TAGA--TAACCCAAGTGAGAA-nTGCTGACATGAGTAAC-nnnnGAAAAAGGGAAn-TCATATCCCTCGCCTAAAGCTTATGGATTTATATAAAGTAACGGCCTCTAAGT Lophodermium_conigenum_NZFS781 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCAAAATTAATGTTAAGTGAAATAAAGGAAGTTTATCTCAAATACGACTAGGGAATAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTAGTTTAGTAAATTAATTTTAAT-TTACATTGATTG-TAGCGCCGAAAATTTAACGGATCTAAACAATATACCGACACCTTGTCCGCATT-nnTACAAGAGCAAT-nn--TTTTTTCTCTTGTTCTT-GCGGGGTAGCAGAAn-CGTTGGGCAGATATTAGACTTTATCTTTAAAAGn-ATAA-AGGA-n-nnnnnTAGGnn-GC-TCTTAGn-ATTTn-TTTTAATATATGT-AGnnnn-GCAACTCGGTAACTCCGAATnnn-CTCCATAGTCTAAGATATTAAATAACTTAATATACC Lophodermium_molitoris_NZFS789 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCAAAATTAATGTTAAGTGAAATTAAGGAAGTTTCTATTAAATACGACTAGTAAATAGGCTTAGAGGCGGCCAATTTTTGAAGACCTCGTAACAGAACACTGGTTCAGTAAATAGCTTCTAATATTATAACGATAGACGGCGCCGAGGATATAACGGATCTAAACAATATACCGACACCTTGTCCGCATT-nn-ACAAGAGCAAA-nn-TTTTG-CTCTTGTTCTTTGCGGGGTAGCAGAACGTTGGGCAGATATTAGACTTTATCTTTTCAAG-nATAA-AGGAGCCTA-TAAATATACCCCAAGTGATAA-nTGCTGACATGAGTAAC-nnnnGAAAAAGGGTAACCAAGAAGAGGATAACTCAGAAGAGGATAACTCAGAAGAGGATAACTCAGAAGA Cyclaneusma_minus_O07_2 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAAAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGGGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAAAGAGAAGGCTAACCT Cyclaneusma_minus_O08_1 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAA-TAATGTTAAATGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCGTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTCACTAT-TTACATTGATAG-AAGCACCGAAAATATATTGGATTTAAACAATATACCGACCCCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAGAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_PN0362 TAAGGTTGTATGTTTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTTTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTTGTAACAGAGCACTGGTTTAGTAAGTAGTTCCCTAT-TTACATTGATAG-AAGCCCCGAAAATATATTGGATTTAAACAATATACCGACCCCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAGAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_PN0363 TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACCAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTTGTAACAGAGCACTGGTTTAGTAAGTAGTTCCCTAT-TTACATTGATAG-AAGCCCCGAAAATATATTGGATTTAAACAATATACCGACCCCTTGTTCATATTTATAAATAAAAAAAAAAAATAAAGCTGATAATGCATGCTGATCTTCTATAAAAATTTTAAGGCGAAAATCCTTTTTTTCGTCGGCTGCAC-AGCGCGCAG-CTAGC-TAGCTAATATTATTAGTTTTTATTATAAATAAGAGGTAGCAGAACGTTAGGTAGATCTCACGATTTAATCTTTTCAAGATTAAAAAAGATAGAATATCCTAAGT Cyclaneusma_minus_SN8_5 TAAGGT-GTATGTCTAAAGGGAAACAGCCCAGAACA-GAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATGAGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAATAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_V1A2_2b TAAGGTTGTATGTCTAAAGGGAAACAGCCCAGAACAAGAGTTAAGGTTCCTAAATTAATGTTAAGTGAAATTAAGGTAGTTTCTATTAAATACGACTAGAAAGTAGGCTTAGAAGCGGCCATTTTTTGAAGACCTCGTAACAGAGCACTGGTTTAGTAAGTAGTTAACTAT-TTACATTGATAG-AAGCACCGAAAATATATCGGATCTAAACAATATACCGACACCTTGTTCATGTTTATAAATAAAGAAAAAAA-TAAAGTGGCCAACAAAGTAAGGCTTAACCTG-CCTCTTGGATGCCTTTTTCTTTTTAAGGCAGGCCTTGCC-AGCAGGCAGCTTGCTTCGCCCAAAAAAAGAGCAGGCAGGCTTTTCCAGCTGGCAGTCCCGTAAGGGTAAGGCTTTGCCCTTGAATGCTTn-CGCCCAAAAAAAAA-GAGAAGGCTAACCT ; END; BEGIN TREES; Title mtLSU; LINK Taxa = Taxa; TRANSLATE 1 Cyclaneusma_minus_101y_4, 2 Cyclaneusma_minus_102g_4, 3 Cyclaneusma_minus_104_4, 4 Cyclaneusma_minus_104_5, 5 Cyclaneusma_minus_107_7, 6 Cyclaneusma_minus_1062, 7 Cyclaneusma_minus_300L_2c, 8 Cyclaneusma_minus_301H_3c, 9 Cyclaneusma_minus_303L_3c, 10 Cyclaneusma_minus_317B, 11 Cyclaneusma_minus_318, 12 Cyclaneusma_minus_C348, 13 Cyclaneusma_minus_DFR1224_10, 14 Cyclaneusma_minus_DFR1224_6, 15 Cyclaneusma_minus_DFR1226_1, 16 Cyclaneusma_minus_DFR1226_5, 17 Cyclaneusma_minus_DFR1227_1, 18 Cyclaneusma_minus_DFR1227_4, 19 Cyclaneusma_minus_DFR1228_5, 20 Cyclaneusma_minus_DFR_1228_9, 21 Cyclaneusma_minus_MC103y_3, 22 Cyclaneusma_minus_MC103y_5, 23 Cyclaneusma_minus_MC303L_1, 24 Cyclaneusma_minus_MC303L_6B, 25 Strasseria_geniculata_MC7964_2, 26 Cyclaneusma_niveum_N219, 27 Cyclaneusma_minus_N226, 28 Cyclaneusma_minus_N231, 29 Strasseria_geniculata_NZFS506, 30 Lophodermium_conigenum_NZFS781, 31 Lophodermium_molitoris_NZFS789, 32 Cyclaneusma_minus_O07_2, 33 Cyclaneusma_minus_O08_1, 34 Cyclaneusma_minus_PN0362, 35 Cyclaneusma_minus_PN0363, 36 Cyclaneusma_minus_SN8_5, 37 Cyclaneusma_minus_V1A2_2b; TREE Imported_tree_0 = ((30:0.32989,(31:0.14012,(25:6.0E-5,29:6.0E-5):0.14774):0.07888):0.094815,((7:0.0024,(3:0.00229,(4:0.00228,(22:6.0E-5,(21:0.00231,(5:6.0E-5,(2:0.0046,(33:0.00458,(35:0.00226,(34:0.00226,(1:0.01387,(8:6.0E-5,10:0.00457):6.0E-5):0.00227):0.00229):0.00697):0.00927):0.00227):0.0023):0.00228):0.00229):6.0E-5):0.00221):0.14177,(26:0.26096,(32:6.0E-5,(6:0.0174,(19:0.00224,((18:6.0E-5,(15:6.0E-5,16:6.0E-5):6.0E-5):6.0E-5,(17:6.0E-5,((23:6.0E-5,24:6.0E-5):6.0E-5,(9:6.0E-5,((14:6.0E-5,(13:6.0E-5,37:6.0E-5):6.0E-5):6.0E-5,(28:6.0E-5,((11:6.0E-5,36:0.00733):0.00224,(12:6.0E-5,(20:0.01479,27:0.00226):6.0E-5):6.0E-5):6.0E-5):6.0E-5):0.00113):0.00112):0.0045):0.00224):6.0E-5):0.00226):0.00215):0.12744):0.11532):0.094815); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 449; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 449; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 449; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1388394511575; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7959426442354442075; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7378249790968891616; mqVersion 275; checksumv 0 3 1821088990 null getNumChars 449 numChars 449 getNumTaxa 37 numTaxa 37 short true bits 15 states 15 sumSquaresStatesOnly 354962.0 sumSquares 354962.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 207; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7959426442354442075 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 10506.1388394462643.3646701679762749835; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 493 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;