#NEXUS [written Mon Dec 30 17:04:26 SGT 2013 by Mesquite version 2.75 (build 566) at Simba.local/192.168.1.9] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=46; TAXLABELS Cyclaneusma_minus_101y_4 Cyclaneusma_minus_102g_4 Cyclaneusma_minus_104_5 Cyclaneusma_minus_104_4 Cyclaneusma_minus_107_7 Cyclaneusma_minus_1062 Cyclaneusma_minus_300L_2c Cyclaneusma_minus_301H_3c Cyclaneusma_minus_303L_3c_ Cyclaneusma_minus_317B Cyclaneusma_minus_318 Cyclaneusma_minus_C348 Cyclaneusma_minus_DFR1224_10 Cyclaneusma_minus_DFR1224_6 Cyclaneusma_minus_DFR1226_5 Cyclaneusma_minus_DFR1227_1 Cyclaneusma_minus_DFR1227_4 Cyclaneusma_minus_DFR1228_5 Cyclaneusma_minus_DFR_1228_9 Cyclaneusma_minus_MC103y_3 Cyclaneusma_minus_MC103y_5 Cyclaneusma_minus_MC303L_1 Cyclaneusma_minus_MC303L_6B Strasseria_geniculata_MC7964_2 Cyclaneusma_niveum_N214 Cyclaneusma_niveum_N215 Cyclaneusma_niveum_N218 Cyclaneusma_niveum_N219 Cyclaneusma_minus_N226 Cyclaneusma_minus_N231 Ceuthospora_sp_NZFS504 Strasseria_geniculata_NZFS506 Lophodermium_conigenum_NZFS781 Lophodermium_molitoris_NZFS789 Lophodermium_conigenum_NZFS790 Lophodermium_sp_NZFS796 Lophodermium_sp._NZFS804 Cyclaneusma_minus_O07_2 Lophodermium_pinastri_O7_2C Lophodermium_pinastri_O7_3 Cyclaneusma_minus_O08_1 Cyclaneusma_minus_PN0362 Cyclaneusma_minus_PN0363 Cyclaneusma_minus_SN8_5 Cyclaneusma_minus_V1A2_2b Cyclaneusma_minus_V3B_3b ; END; BEGIN CHARACTERS; TITLE ITS_new_Matrix; DIMENSIONS NCHAR=526; FORMAT DATATYPE = DNA GAP = - MISSING = n; MATRIX Cyclaneusma_minus_101y_4 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_102g_4 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_104_5 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTT--ACAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_104_4 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_107_7 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTT--ACAGGT-GACCTCGGATCAGGTAGG Cyclaneusma_minus_1062 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_300L_2c GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-GGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTT--ACAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_301H_3c GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-GGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_303L_3c_ GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_317B GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_318 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_C348 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_DFR1224_10 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_DFR1224_6 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_DFR1226_5 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCnnnnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_DFR1227_1 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_DFR1227_4 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGT-GACCTCGGATCAGGTAGG Cyclaneusma_minus_DFR1228_5 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTT-TCAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_DFR_1228_9 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_MC103y_3 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTT--ACAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_MC103y_5 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTT--ACAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_MC303L_1 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_MC303L_6B GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTT--TCAGGT-GACCTCGGATCAGGTAGG Strasseria_geniculata_MC7964_2 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTT-TGTTTACAATACCTTTGTTGCTTTGGCGGCCCCGTCGn-CAAGACAACCGGCTCCG-nnnnnn-GCTGGTCAGCGGCCGCCAGAGGAC-TCAAAACTCATATTATTATTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGTCACCCCC-nnn-nnn-GGGTGCGCCTTAAAATCAGTGGCGGTGCC-GTCT-GGCTTCAAGCGTAGTAATACTT-CTCGCT-TTGGAGTCCGGGCGAGCGTCCTGCCAA-n-AACCCCCATATTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_niveum_N214 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCCACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CAGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGACCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_niveum_N215 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TATGTTGCTTCGGCAGGCCGGGCCTTCGGGCCCACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CAGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGACCCTGGGTTGGTG-CCTGCCAG-n-AACCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_niveum_N218 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TATGTTGCTTCGGCAGGCCGGGCCTTCGGGCCCACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CAGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGACCCTGGGTTGGTG-CCTGCCAG-n-AACCCTAAT-TTTTTTCAGGnnnnnnnnnnnnnnnnnnnn Cyclaneusma_niveum_N219 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TATGTTGCTTCGGCAGGCCGGGCCTTCGGGCCCACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CAGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGACCCTGGGTTGGTG-CCTGCCAG-n-AACCCTAAT-TTTTTnnnnnnnnnnnnnnnnnnnnnnnnn Cyclaneusma_minus_N226 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_N231 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Ceuthospora_sp_NZFS504 GATCATTAATGAG-ATCATG-n-CCTTCGGGn-GTAGACCTCCCACCCTC-TGTATACAATACCTTTGTTGCTTTGGCGGCCCCGTCGn-CAAGACAACCGGCTCCG-nnnnnn-GCTGGTCAGCGGCCGCCAGAGGAA-TCAAAACTCTTATTATTATTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGTCACCCCC-nnn-nnn-GGGTGCGCCTTAAAATCAGTGGCGGTGCC-GTCT-GGCTTCAAGCGTAGTAATACTT-CTCGCT-TTGGAGTCCGGGCGAGCGTCCTGCCAA-n-AACCCCCATATTTTT-CAGGnnnnnnnnnnnnnnnnnnnn Strasseria_geniculata_NZFS506 GATCATTAATGAG-ATCATG-n-CCTTCGGGn-GTAGACCTCCCACCCTT-TGTTTACAATACCTTTGTTGCTTTGGCGGCCCCGTCGn-CAAGACAACCGGCTCCG-nnnnnn-GCTGGTCAGCGGCCGCCAGAGGAC-TCAAAACTCATATTATTATTGTCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGTCACCCCC-nnn-nnn-GGGTGCGCCTTAAAATCAGTGGCGGTGCC-GTCT-GGCTTCAAGCGTAGTAATACTT-CTCGCT-TTGGAGTCCGGGCGAGCGTCCTGCCAA-n-AACCCCCATATTTTTTCAGGnnnnnnnnnnnnnnnnnnnn Lophodermium_conigenum_NZFS781 GATCATTACAGAAGGATATC-nGCCCTCGGGCTTC--TCTTCTCACCCTT-TGTTTACCACAC-GTAGTTGCCTTGGCnnnnnnnnnnn-nnnnnnnnnn-GCTCCG-nnnnnn-nnnnnnnnnnnn-CGCCAGTGGAT--CGAAACTCCTG-AATCATTGCCGTCTGAGTACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGC-CCGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCC-GACCTTCAGCGCAGTAATGCTC-GCCGCTGTTAGGGAAGGGCAGCAAGGGCCGTCAT-ACAACCCCCACAC---ACAAGGT-GACCTCnnnnnnnnnnnn Lophodermium_molitoris_NZFS789 GATCATTAAAGAATAACAGG-nGTCTTCGGGCCCC--TATTCACACCCTAGTGTTTACCTAAC-TTTGTTGCTTTGGCnnnnnnnnnnn-nnnnnnnnnn-Gn-GAAAnnnnnn-nnnnnnnnnnnn-CGTCAGAGGAC--CTAAACCCTAG-AATCTCTGCTGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGT-TCGCCTCC-nnn-nnn-GGGCTTACCTCAAAATCAGTGGCGGCCTC-GTCT-GACCTCAAGCGTAGTAATACTC-GTCGCTTGGAGA-ATCAGTCGAAAn-GCCTGCTAGA-AACCCCCACACTATACTAGGTTGACCTCGGATCAGGTAGG Lophodermium_conigenum_NZFS790 GATCATTACAGAAGGATATC-nGCCCTCGGGCTTC--TCTTCTCACCCTT-TGTTTACCACAC-GTAGTTGCCTTGGCnnnnnnnnnnn-nnnnnnnnnn-GCTCCG-nnnnnn-nnnnnnnnnnnn-CGCCAGTGGAT--CGAAACTCCTG-AATCATTGCCGTCTGAGTACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGC-CCGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCC-GACCTTCAGCGCAGTAATGCTC-GCCGCTGTTAGGGAAGGGCAGCAAGGGCCGTCAT-ACAACCCCCACAC---ACAAGGTTGACCTCGGATCAGGTAGG Lophodermium_sp_NZFS796 GATCATTAAAGAATAACCGG-nGCCTTCGGGCCCCC-TATTCTCACCCTT-TGTCTACCACAC-TTTGTTGCCTTGGCnnnnnnnnnnn-nnnnnnnnnn-GCTGCGGnnnnnn-nnnnnnnnnnnn-CGCCAGTGGAA--CGAAACCCTGG-AATCATTGCTGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGC-TCGCCCTG-nnn-nnTAGGGCCTGCCTCAAAATCAGTGGCGGCCACCGTCC-GACCTTCAGCGCAGTAATGCTC-GTCGCTGTAAGGG-AGGGCCGCA-n-GCCGTCATGACAACCCCCACTTT--ACAAGGTTGACCTCGGATCAGGTAGG Lophodermium_sp._NZFS804 GATCATTAAAGAATAACCGG-nGCCTTCGGGCCCCC-TATTCTCACCCTT-TGTCTACCACAC-TTTGTTGCCTTGGCnnnnnnnnnnn-nnnnnnnnnn-GCTGCGGnnnnnn-nnnnnnnnnnnn-CGCCAGTGGAA--CGAAACCCTGG-AATCATTGCTGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGC-TCGCCCTG-nnn-nnTAGGGCCTGCCTCAAAATCAGTGGCGGCCACCGTCC-GACCTTCAGCGCAGTAATGCTC-GTCGCTGTAAGGG-AGGGCCGCA-n-GCCGTCATGACAACCCCCACTTT--ACAAGGT-GACCTnnnnnnnnnnnnn Cyclaneusma_minus_O07_2 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGT-GACCTCGGATCAGGTAGG Lophodermium_pinastri_O7_2C GATCATTAAAGAATAAACGG-nGCCTCCGGGCCCCC-TATTCTCACCCTT-TGCCTACCATAC-ATTGTTGCCTTGGCnnnnnnnnnnn-nnnnnnnnnn-GCTTTG-nnnnnn-nnnnnnnnnnnn-CGCCAGTGGAC--AGAAACCCTTG-AATCATTGCCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCCGCTTGGTGTTGGGC-TCGCCCTC-nnn-nnTAGGGCTTGCCTCAAAATCAGTGGCGGCCACAGCCC-GACCTCTAGCGCAGTACTACTC-GTCGCTGGAAGG--AGAGGCCTA-n-GGCGCTATGACAACCCCCTTTTT-TACAAGGTTGACCTCGGATCAGGTAGG Lophodermium_pinastri_O7_3 GATCATTAAAGAATAAACGG-nGCCTCCGGGCCCCC-TATTCTCACCCTT-TGCCTACCACAC-ATTGTTGCCTTGGCnnnnnnnnnnn-nnnnnnnnnn-GCTTTG-nnnnnn-nnnnnnnnnnnn-CGCCAGTGGAC--AGAAACCCTTG-AATCATTGCCGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCCGCTTGGTGTTGGGC-TCGCCCTC-nnn-nnTAGGGCTGCCCTCAAAATCAGTGGCGGCCACAGCCC-GACCTCTAGCGCAGTACTACTC-GTCGCTGGAAGG--AGAGGCCTA-n-GGCGCTATGACAACCCCCTTTTT-TACAAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_O08_1 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-AGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_PN0362 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-GGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_PN0363 GATCATTAATAAAAGTACTGCGGCCTCCGGGCTGCGGAACTCCAACCCTT-TGTTTACTATAC-CTCGTTGCTTCGGCAGGCCGGGCCTTATGGTCCGCCGGCTCCCnnnn-TGAGCTGGCGAGCGCCTGTCAGAGGACCTACAAAATCTG--TGTTAGTGTTGTCTGAGTATCATTTAATAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATAAGACCACTCAAGCCCAGCTTGGTGTTGGGACGCGCCCC-nnnn-nnnn-GGCGCTCCTCAAAATCAGTGGCGGCT-C-GGCTCAGCTTCATGCGTAGTAAAATGT-CTCGCT-ATGGACGCTGGGCTGGCG-CCTGCCAG-n-AAGCCTAAT-TTTT-ACAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_SN8_5 GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_V1A2_2b GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG Cyclaneusma_minus_V3B_3b GATCATTACTGAA-GTACTGCGGCCTCCGGGCCGCGGAACTCCCACCCAC-TGTTTACTATAC-TTTGTTGCTTCGGCAGGCCGGGCCTTCGGGCCTACCGGCGCCCCCCGGGGCGCTGGCCAGCGCCTGCCAGAGGACCTGTAAAATCTG--TGTTAGTGTCGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTATACCCCTCAAGCCTAGCTTGGTATTGGGACGCGCCGCCCGCn-CCGGCGGCGCTCCTTAAAATCAGTGGCGGCT-C-AGCTCAGCTTCAAGCGTAGTAATTTTTTCTCGCT-CTGGAGCCTGGGTTGGTG-CCTGCCAG-n-AAGCCTAAT-TTTTTTCAGGTTGACCTCGGATCAGGTAGG ; END; BEGIN TREES; Title ITS_new_DNAml; LINK Taxa = Taxa; TRANSLATE 1 Cyclaneusma_minus_101y_4, 2 Cyclaneusma_minus_102g_4, 3 Cyclaneusma_minus_104_5, 4 Cyclaneusma_minus_104_4, 5 Cyclaneusma_minus_107_7, 6 Cyclaneusma_minus_1062, 7 Cyclaneusma_minus_300L_2c, 8 Cyclaneusma_minus_301H_3c, 9 Cyclaneusma_minus_303L_3c_, 10 Cyclaneusma_minus_317B, 11 Cyclaneusma_minus_318, 12 Cyclaneusma_minus_C348, 13 Cyclaneusma_minus_DFR1224_10, 14 Cyclaneusma_minus_DFR1224_6, 15 Cyclaneusma_minus_DFR1226_5, 16 Cyclaneusma_minus_DFR1227_1, 17 Cyclaneusma_minus_DFR1227_4, 18 Cyclaneusma_minus_DFR1228_5, 19 Cyclaneusma_minus_DFR_1228_9, 20 Cyclaneusma_minus_MC103y_3, 21 Cyclaneusma_minus_MC103y_5, 22 Cyclaneusma_minus_MC303L_1, 23 Cyclaneusma_minus_MC303L_6B, 24 Strasseria_geniculata_MC7964_2, 25 Cyclaneusma_niveum_N214, 26 Cyclaneusma_niveum_N215, 27 Cyclaneusma_niveum_N218, 28 Cyclaneusma_niveum_N219, 29 Cyclaneusma_minus_N226, 30 Cyclaneusma_minus_N231, 31 Ceuthospora_sp_NZFS504, 32 Strasseria_geniculata_NZFS506, 33 Lophodermium_conigenum_NZFS781, 34 Lophodermium_molitoris_NZFS789, 35 Lophodermium_conigenum_NZFS790, 36 Lophodermium_sp_NZFS796, 37 Lophodermium_sp._NZFS804, 38 Cyclaneusma_minus_O07_2, 39 Lophodermium_pinastri_O7_2C, 40 Lophodermium_pinastri_O7_3, 41 Cyclaneusma_minus_O08_1, 42 Cyclaneusma_minus_PN0362, 43 Cyclaneusma_minus_PN0363, 44 Cyclaneusma_minus_SN8_5, 45 Cyclaneusma_minus_V1A2_2b, 46 Cyclaneusma_minus_V3B_3b; TREE PHYLIP_1 = (((39:0.00134,40:0.00524):0.04646,((33:6.0E-5,35:6.0E-5):0.08438,(36:6.0E-5,37:6.0E-5):0.01185):0.01979):0.02152,(34:0.05917,((31:0.00627,(24:6.0E-5,32:6.0E-5):0.00222):0.02508,(((7:6.0E-5,(43:6.0E-5,(8:6.0E-5,42:6.0E-5):6.0E-5):6.0E-5):0.00201,((41:6.0E-5,(1:6.0E-5,10:6.0E-5):6.0E-5):6.0E-5,(5:6.0E-5,((2:6.0E-5,4:6.0E-5):6.0E-5,(20:6.0E-5,(3:6.0E-5,21:6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):0.0654,((25:6.0E-5,(26:6.0E-5,(27:6.0E-5,28:6.0E-5):6.0E-5):0.00394):0.00199,(((17:6.0E-5,38:6.0E-5):6.0E-5,(23:6.0E-5,(18:6.0E-5,(15:6.0E-5,(6:6.0E-5,22:6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5,(((9:6.0E-5,14:6.0E-5):6.0E-5,(12:6.0E-5,13:6.0E-5):6.0E-5):6.0E-5,(19:6.0E-5,(44:6.0E-5,((11:6.0E-5,46:6.0E-5):6.0E-5,(45:6.0E-5,(30:6.0E-5,(16:6.0E-5,29:6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):6.0E-5):0.00586):0.02375):0.11489):0.09448):0.02152); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 526; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 526; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 526; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1388394266487; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7824570208364188575; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6554337308743547474; mqVersion 275; checksumv 0 3 2008994993 null getNumChars 526 numChars 526 getNumTaxa 46 numTaxa 46 short true bits 15 states 15 sumSquaresStatesOnly 491586.0 sumSquares 491586.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 207; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7824570208364188575 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 9999.1388394264512.3977141912162597919; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 493 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6554337308743547474 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 493 397; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;