#NEXUS [written Mon Jan 06 13:24:46 CET 2014 by Mesquite version 2.74 (build 550) at D0135944/10.85.9.195] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=133; TAXLABELS MS2592 RO18 RV58 RO32 RO31 JV2549 RV23 GW95 GR38 GW4 CJ3314 EK165 RV94 RV21 RV100 GA2112 RV54 RV83 GA2174 GA2109 GA2116 JW5155 TA3364 RO29 JW5388 CJ6241 RV60 GA2110 RV42 GA2119 GA2123 CJ7011 CJ6729 GA2337 GA2180 GAsn1 BS2591 GA2208 FB3 RV39 RV87 RV50 RV121 RV122 QL12962 GA2108 RV30 CJ10470 CJ6717 RO12 GA2178 CJ10522 RV62 RO13 JM38 GA2111 RV15 RV72 RV32 RV48 GA2115 GS7751 GA2118 JW4419 JW4451 GA2122 LC567 FB11 FB9 BS2664 JW4640 GA2113 GS8294 FB12 GS327 RV55 DH2964 RG5541 RV75 CJsn1 RV59 LC578 RV119 FB6 GA2107 JW4382 JW5172 RV43 JL3197 RO42 TA3620 JB10128 GW21 JB07 GA2121 RV80 ATBP610 GA2104 RV49 RO41 RV95 TS2859 QL13003 GA2117 GW113 AG66982 JPS5679 JPS9541 JPS9529 JPS9543 PM9505 FB15 RV63 FJB16000 JW4474 GA2120 RV40 FB13 RV134 HB3192 MC2149 GW12 MC582 CS217 NCsn1 TN159 MC2148 QL12745 JB10171 JB9908 HB94 McPh10218 GA2167 ; END; BEGIN CHARACTERS; TITLE trnL-F_MAFFT; DIMENSIONS NCHAR=1120; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX MS2592 aattcagagaaaccctgg----aaaaagaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagaac-caagcca-tttagtaaaa-ttagtaaaatgagaaaga-cgacgcat-cggaaa-tggtc-g RO18 aattcagagaaaccctgg----aaaaagaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatattgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaaa-ttagtaaaatgagaaaga-cgacgcat-cggaaa-tggtc-g RV58 aattcagagaaaccctgg----aaaaagaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatattgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaaa-ttagtaaaatgagaaaga-cgacgcat-cggaaa-tggtc-g RO32 aattcagagaaaccctgg----aaaaagaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatattgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaaa-ttagtaaaatgagaaaga-cgacgc----------------- RO31 aattcagagaaaccctgg---aaaaaagaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatattgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaaa-ttagtaaaatgagaaaga-cgacgca---------------- JV2549 aattcagagaaaccctgg----aaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaagacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcaat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttgtttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaa--------- RV23 aattcagagaaaccctgg----aaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaagacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcaat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatccccacttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GW95 aattcagagaaaccctgg----aaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaagacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcaat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttgtttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GR38 aattcagagaaaccctgg----aaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttt--------------------------------------------atgagaaaga-cgacgcat-cagaaa-tggtc-g GW4 aattcagagaaaccctgg----aaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttt--------------------------------------------atgagaaaga-cgacgcat-cagaaa-tggtc-g CJ3314 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaagtccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaattccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttt--------------------------------------------atgagaaaga-cgacgcat-cggaaa-tggtc-g EK165 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagattagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgcc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g RV94 aattcagaggaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgcc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g RV21 aattcagaggaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgcc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgctt-ccgaaa-tggtc-g RV100 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgcc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cgg----------- GA2112 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgcc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tgg-c-g RV54 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgcc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag?-cgacgcat-c?ggaaatgg---? RV83 aattcagagaaaccctgg--aaaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttatatgaaaaatgaaataaatgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GA2174 aattcagagaaaccctgg--aaaaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------g---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagtttaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GA2109 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tS-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tggtc-g GA2116 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tgg-c-g JW5155 aattcagagaaaccctgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgc----------------- TA3364 aattcagagaaaccctgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgca---------------- RO29 aattcagagaaaccctgg---aaaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaagaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactctctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JW5388 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaagaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactctctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g CJ6241 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaagaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactctctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgaga?--------------------------- RV60 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcgtctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgaga?--------------------------- GA2110 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctaccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tggtc-g RV42 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagccagtttagtaaa----------atgagaaag------------------------? GA2119 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------tttttatttat-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgc-------acttt----------tt------cgtc---------tt--------ttttttaattcgacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tggtc-g GA2123 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggt--cagag--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tg?c--g CJ7011 ------------------------------cgggca?tcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaagacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgactcgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcaat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------a?-------------------------------- CJ6729 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatattgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaa?ggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcg?tatctttYtcattcattttcattcggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagtaaaaacaaggaatcccca-ttggRaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaaa-ttagtaaaatgagaaag?-cgacgcat-c?ggaa-atg?--- GA2337 aattcagagaaaccctgg---aaaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcgtctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacctcaagcca-tttagtaaa----------atgagaaaga-cgacgcat-c------------- GA2180 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgacttg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------tttttatttat-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaatttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GAsn1 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgacctg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaa-------aaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g BS2591 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggt?cagag---ctcaagggaagctgttctaataaatggagttgac-tg-cgtt-Sat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcgtctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggca--------- GA2208 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaatgtaaaggaaccct----------tcg-ttaagacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcaat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaaccttaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------actttaacgtacttttt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g FB3 ------------------------------tgggca?tcctg-ag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttatatgaaaaatgaaataaatgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-?ttagtaaa----------atgagaaaga-cgacgcat-cagaaaatggtgcg RV39 ------------------------------tgggca?tcctg-agcccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-ccggaaatggtgcg RV87 ------------------------------tgggca?tcctgaag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcgtttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-caggaaatggtgcg RV50 ------------------------------tgggca?tcctgaag-ccaaatccgg-tttttcaaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgt?ctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacagac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagctatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgtc--------ttt--------gtttttaatt-gacatagacc-caag?-------------------------------------------------------- RV121 -------------cctgg----aaaaagaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatattgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacagagacc-caagcca-tt--------------------------------------------------- RV122 -----------accctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgcc--------ttt--------ttttttaatt-gacagagacc-caagcca-ttt-------------------------------------------------- QL12962 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------agaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagattagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttatcattcattttcattcggttctttcacaaacctgaa-ttctttttttcttttcccaagtcttgtaatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacatacttt-aacgt-------acttt----------tt------cgcc---------tt--------ttttttaatt-gaca-------------------------------------------------------------------- GA2108 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaaaggagttgac-tg-cgttgcat------tagtaaagtaaaggacccct----------tcg-ttaaaacttaagaaaaactaaataag--------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------catttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttcgttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacacggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cggcgcat-cggaaa-tggtc-g RV30 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaaaggagttgac-tg-cgttgcat------tagtaaagtaaaggacccct----------tcg-ttaaaacttaagaaaaactaaataag--------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------catttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttcgttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacacggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag?tcggcgcat-c?------------ CJ10470 aattcagagaaaccctgg---aaaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaataa-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-tgaaaacttcag----------------------aaaaac-------taaagtc--------------------------aaaaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacttgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatccccg-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g CJ6717 ------------------------------cgggca?tcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaataa-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-tgaaaacttcag----------------------aaaaac-------taaagtc--------------------------aaaaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagtaaaaacaaggaatccccg-ttgg?aattgg?atgattaacaatccaaatcattacttggactgaaacgtactttaaacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag?-cgacgcat-caggaaatggtc-g RO12 -attcagagaaaccctgg----aaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaataa-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-tgaaaacttcag----------------------aaaaac-------taaagtc--------------------------aaaaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatccccg-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtactttaaacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgaga---------------------------- GA2178 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaataa-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-tgaaaacttcag----------------------aaaaac-------taaagt------aaaaa----------------aaaaacct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-a------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tctttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatccccg-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------?cttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g CJ10522 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcattaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattg--------gaaatg-------------------------------------------gtc-----------------------------------------------------------------------------------------------------g RV62 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcattaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattg--------gaaatg-------------------------------------------gtc-----------------------------------------------------------------------------------------------------g RO13 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactagctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcattaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattg--------gaaatg-------------------------------------------gtc-----------------------------------------------------------------------------------------------------g JM38 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccgtt-cgactccctaatta-tttatcttattctcccttttcattaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattg--------gaaatg-------------------------------------------gtc-----------------------------------------------------------------------------------------------------g GA2111 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------gtgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac----------------------------------------------------------------------------------------------------------------------------------------------------------------- RV15 -attcagagaaaccctgg--aaaaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt---------------------------aaaaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaaga-cgacgctt-cggaaa-tggtc-g RV72 aattcagagaaaccctgg---aaaaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------gtgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtccaa-ttagtaaaatgagaaa-------------------------- RV32 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------gtgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaagttagtaaaatgagaa?-------------------------- RV48 ------------------------------cgggc??tcctgaag-ccaaatccgg-tttt?cgaaaa------caaaacaaagt?cataaagac?gaat-a-----aaaaaggataggtgcagaga--ctcaa?ggaagc?gt?ctaataaatggagttgac-tg-cgt?gc?t------tagtaaagtaaagga?ccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ata?ccct-at-------------------------?tac?tac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------gtgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaagttagtaaaa?-------------------------------- GA2115 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------gtgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaag--cgacgcat-cggaaa-tgg-c-g GS7751 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttgatagataatagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaag--cgacgcat-cggaaa-tgg-c-g GA2118 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacctt----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcagttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------gcttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaag--cgacgcat-cggaaa-tggtc-g JW4419 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacctt----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacc?gaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttagtatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcagttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------gcttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaaga-cgacgcat-cggaaa-tggtc-g JW4451 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacctt----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttagtatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcagttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------gcttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaaga-cgacgcat-cggaaa-tggtc-g GA2122 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tgccgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-ttttttatttatat---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttaagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaag--cgacgcat-cggaaa-tg?-c-g LC567 ------------------------------cgggca?tcctgaagcccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgt?ctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------gtgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaaga-cgacgcattcaggaaatggtgc? FB11 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taa?gt------aaagg----------------atatccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtatac-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactataaatattgtgtcgataccccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaaga-cgacgcat-caggaaatggtgcg FB9 ------------------------------cgggc??tcctg-ag-ccaaatccgg-tttt?cgaaaa------caaaacaaagt?cataaagacagaat-a-----aaaaaggataggtgcagaga--c?caa?ggaagc?gt?ctaataaatggagttgac-?g-cgt?gc?t------tagtaaagtaaagga?ccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aa?gg----------------ata?ccct-at-------------------------?tac?tac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtat?c-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaattaaact-aaaatattggatcgat--tccaagttgaag-aaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--ttcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattac-------gaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtcaaa-ttagtaaaatgagaaaga-cgacgcat-cag?aaatggt--g BS2664 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagag---ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaagaatcga-------ttgatcaaatcattcactccatcggttg-------atagataaccgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-tggctccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa-attagtaaaatgagaaag--cgacgcat-cggaaa-tggc--g JW4640 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaacaaaaccaaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaaaggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcg-----c-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcaccccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GA2113 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaacaaaaccaaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaaaggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcg-----c-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcaccccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tggtc-g GS8294 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaacaaaaccaaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagag---ctcaatggaagctgttctaataaaaggagttgac-tg-cgtt-cat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcg-----c-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcaccccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tggtc-g FB12 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaacaaaaccaaaacaaagttcataaagccagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaaaggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcg-----c-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcaccccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-caggaaatggtgcg GS327 ---------------------------------------------------------------------------------------------------t-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaaaggagttgac-t--Sgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttaag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgRcccgaatcg-----c-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcaccccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgttccgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tggtc-g RV55 aattcagagaaaccctgg----aaaaaaaatgggtaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataacctt-at-------------------atacatatacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g DH2964 aattcagagaaaccctgg-----aaaaaaatgggtaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataacctt-at-------------------atacatatacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttatttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g RG5541 aattcagagaaaccctgg-----aaaaaaatgggtaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataaccct-at-------------------atacatatacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc------ttttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g RV75 aattcagagaaaccctgg----aaaaaaaatgggtaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataaccct-atatacatatacatactgaaaatacatatacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-- CJsn1 ------------------------------tgggtaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggt-cagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataacctt-at-------------------atacatatacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttctttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tg----- RV59 ------------------------------------------------------------------aa------aaaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataacctt-at-------------------atacatatacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-accgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-ttta------------------------------------------------- LC578 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatagat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaaccttaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag?-cgacgcat-cg?----------- RV119 --------------ctgg----aaaaaaaatgggtaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataaccct-atatacatatacatactgaaaatacatatacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttccaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatccttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gaca-------------------------------------------------------------------- FB6 ------------------------------agggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgt?ctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagtaaaggaaaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattaaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaat-----caagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccccaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgc?aatga-gcatctttgagtaaaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cagaaa-tggtc-g GA2107 --------------------------------ggcaatcctg-ag-ccaaatccgg-?ttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taacgt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcagtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaataga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgtcaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatctga?tctcccttttcgttaatggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttctttttcttttcccaagtcttgtgatagatatgatacacatggaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-t-----g JW4382 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgacctg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagctaaagtataaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaagaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctacatgttaatgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttataaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------catc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JW5172 aattcagagaaaccctgg-----aaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagctaaagtataaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaagaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctacatgttaatgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttataaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-ttt-------------------------------------------------- RV43 aattcagagaaaccctgg-----aaaaaaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaataa-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------tatt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttataaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcgtttctttcacaaacctgaa--tttctttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatccccg-ttgtaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgac------------------- JL3197 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccgtt-cgactccttaattattttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcg-------cacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------t-------cgtc-----tttttt--------ttttttaatg-gacata??cc-caa?cc?-tttagtaaa----------a?ga?aaa?a-c?ac?cat-cggaaa-?ggtc-g RO42 aattcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccat----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccctaat-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacaacccgaatcgatattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaa-----gaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagcccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttccaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-c-----a-taaaataaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g TA3620 aattcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccat----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccctaat-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacaacccgaatcgatattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaa-----gaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagcccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttccaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-c-----------ataaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JB10128 aattcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaacctc----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgccccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactcaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcactcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cttc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GW21 aattcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgccccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactcaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcactcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cttc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JB07 aattcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgccccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactcaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcactcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cttc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GA2121 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtccagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaatcggtattctt------------t---------t-tt------------------tttttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccccaaaaaggccgtt-cgactccctcatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tggtc-g RV80 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaatcggtattctt------------t---------t-tt------------------tttttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccccaaaaaggccgtt-cgactccctcatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g ATBP610 aattcagagaaaccctgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagcccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc----------t--------ttttttaatt-gacatagacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GA2104 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtccagagc--ctcaatggaagctgttctaataaatggagttgac-ta-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaatcggtattc-t------------t---------t-tt------------------tttttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccccaaaaaggccgtt-cgactccctcatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgca-----ttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatgaggcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------atgagaaag--cgacgcat-cggaaa-tgg-c-g RV49 ------------------------------tgggca?tcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-ta-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaatcggtattc-t------------t---------t-tt------------------tttttat----------------atgaaaaatgaaataaactaaaaatat?gaatcgat--tccaagt?gaagaaaaaatcga-------ttgatc?aatcattcactccatcgg?tg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccccaaaaaggccgtt-cgactccctcatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgca-----ttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------a?-------------------------------- RO41 aattcagagaaaccctgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaataga-------ttgatcaaatcattcactccatcagttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tcagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----ttttttttgtttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgtaatatatacttt----------tt------cgtc-----tttttt--------ttttttaatt-gacatagatc-caagcca-tttagtaaa----------atgagaaaga-caacgcat-cggaaa-tggtc-g RV95 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaataga-------ttgatcaaatcattcactccatcagttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tcagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttat?ttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----ttttttttgtttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgtaatatatacttt----------tt------cgtc-----tttttt--------ttttttaatt-gacatagatc-caagcca-tttagtaaa----------atgagaaaga-caacgcat-cggaaa-tggtc-g TS2859 aattcagagaaaccctgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatggacaagaaggaaatttatag-tcagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----ttttttttgtttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgtaatatatacttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagatc-caagcca-tttagtaaa----------atgagaaaga-caacgcat-cggaaa-tggtc-g QL13003 aattcagagaaaccctgg--aaaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tcagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----ttttttttgtttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgtaatatagacttt----------tt------cgtc-------ttttttttttcattttttaatt-gacatagatc-caagcga-tttagtaaa----------atgagaaaga-caacgcat-cggaaa-tggtc-g GA2117 ------------------------------tgggcaatcctg-ag-ccaaatccgg-tttttcg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtccaggagacttcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcgg?attc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcagttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tcagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcgg?tctttcacaaacctgaa----ttttttttgtttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgtaatatatacttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagatc-caagcca-tttagtaaa----------atgagaaag--caacgcat-cggaaa-tgg-c-g GW113 aattcagagaaaccccgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgtat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaag--------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccttaattattttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcg-------cacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc------ttttt--------ttttttaatt-gacatagacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g AG66982 aattcagagaaaccctgg--aaaaaaaaaatgggcaatcctg-ag-ccaaatccgt-ttttttgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgat-tg-cgttgcat------tagtaaagtaaaggaa-cct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatag------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcacttcatcggttg-------atagataactgattaatcggacgagaataaagatagagccccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccc-aaaaaggccgtt-cgactccctaattc-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatccccg-ttggaaattgaattgattaacaatccaaatcattacttggactgaaacgtacttg-aacgt-------acttt----------ttttttttcgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JPS5679 aattcagagaaaccctgg---aataaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctattctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-atataca--------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgcaaaatgaaataaactcaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccataggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaacaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaagccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctca------ttcattcggttctttcacaaacctgaa---tcttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JPS9541 aattcagagaaaccctgg---aataaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctattctaataaatggagttgac-tg-cgttgcattagtaatagtaaagtaaagaaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccataggttg-------atagataacggattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaacaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaagccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctca------ttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatccccg-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-caacgcat-cggaaa-tggtc-g JPS9529 aattcagagaaaccctgg---aataaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccataggttg-------atagataactgattaatcgggcgagaataaagatagagtcccattctac------atgttaatatcgacaacaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccc-aaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctca------ttcattcggttctttcacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaa-aaggaatcccca-ttagaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JPS9543 aattcagagaaaccctgg---aataaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaataaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaaattcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgaccctaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccataggttg-------atagataactgattaatcgggcgagaataaagatagagtcccatgctac------atgttaatatcaacaacaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctagtta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcatt-------ggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgat--acatgcaaatga-acatctttgagt-aaaacaaggaatcccca-ttagaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------tct--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g PM9505 --------------------------------------------g-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgRaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccataggttg-------atagataactgattaatcgggcgagaataaagatagagtcccattctac------atgttaatatcgacaacaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccc-aaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattc-------ggttYttcacaaacctgaa-tttcttttttcttttcccaagtcttgggatagatatgatacacatgcaaatga-gcatctttgagt-aaaa-aaggaatcccca-ttagaaattggaatgattaacaattcaaatcattacttggactgaaacgtacttt-aacgt-------a-------------------------------------------------------------------------------------------------------------------------------- FB15 ------------------------------cgggca?tcctgaag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaat?ggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaact--------------------------------aaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgacttcctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgtt-tctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------cttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-ccggaaatggtgcg RV63 ---------------------------aaacgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaattggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaact--------------------------------aaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgacttcctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgtt-tctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------cttt--------ttttttaatt-gacatagacc-caagcca-tttagta---------------------------------------------- FJB16000 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaagggaacccc----------ccg-ttaaaacttcag----------------------aaaaac-------taaagt------aaaag----------------ataatcct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaaata---------------------------aactaaaaatcga-------ttgatcaaatcatccactccatcggttg-------atagataactgattaatcagacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaatttgtt-tctttctcattcattttcattcggttctttcacaaacctgaa---tcttttttcttttcccaRgtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------cttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JW4474 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgacctg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac-----------ttgaaagactatctcaaatg-------------attaatgatgacccgaattggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaact--------------------------------aaaaatcga-------ttgatcaaatcattcactccatcg?ttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgacttcctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgtt-tctttctcattcattttcattcggttctttcacaaacctgaa---ttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------cttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GA2120 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgacctg-cgttgcat------tagtaaagtaaaggaacccc----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaaata---------------------------aactaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactcc---------------------------------------------------------------------------------cacaaacctgaa--tttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------cttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g RV40 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taacgt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaacaatattgaatcgat--tccaagttgaagaaaaaataga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttctag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatctgattctcccttttcgttaatggttcaaaattcgttatctttctcattcattttcattcggttctttcacaa-cctgaa--tttctttttcttttccc?agtcttgtgatagatatgatacacatgc?aatg?-gcatctttgagtaaaa?c?aggaatcccc?-ttgg?aattgg?atgattaac?atcc?aatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc------ttttt--------ttttttaatt-gacatagacc-caagccagtttagtaaa----------atgagaaaga-cgacgcat-ca?aaa-tggtggg FB13 ------------------------------cgggca?tcctgaag-ccaaatccggttttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taacgt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaacaatattgaatcgat--tccaagttgaagaaaaaataga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttctag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatctgattctcccttttcgttaatggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa--tttctttttcttttcccaagtcttgtgatagatatgatacacatgc?aatg?-gcatctttg?gtaaaaacaagg?atcccc?-ttgg?aattgg?atgattaac?atcc?aatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc-------ttttt?------?ttttaagtt-gacatagacctc------------------------------------------------------------ RV134 ---tcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaaaggagttgac-tg-cgttgcat------tagtaaagtaaaggacccct----------tcg-ttaaaacttaagaaaaactaaataagaaaaactaaaaaac-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------catttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataattgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttcgttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacacggaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gaca-------------------------------------------------------------------- HB3192 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa---------ttgatttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggattgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------ttttttt-cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g MC2149 aattcagagaaaccctgg-----aaaaaaatgggcaatcctg-ag-ccaaatccgt-tttttt-----------gaaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-cgaaaacttaag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac--atatacatagtgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaaataaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccccaaaaaggccgtt-cgactccctaatta-tttatcttattctctcttttcgttaacggttcaaaattcgttatttttctcattcattttcattcggttctttcacaaacctgaa---------tttatttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggattgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------ttttttt-cgtc--------ttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g GW12 aattcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-ttttttg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaatttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at---------------------atacatacatac------------tgaaagactatctc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------atcattcactccatcggttg-------atagataacggattaatcggacaagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca--------ttggaatgattaacaatccaaatcattacttgaactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---tttttttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgacaaaga-cgacgcat-cggaaa-tggtc-g MC582 aattcagagaaaccctgg----aaaaaaaatgggcaatcctg-ag-ccaaatccgg-ttttttg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaatttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at------atacatacatactgaatacatacatac------------tgaaagactatctc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------atcattcactccatcggttg-------atagataacggattaatcggacaagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccc-aaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca--------ttggaatgattaacaatccaaatcattacttgaactgaaacgtacttt-aacgt-------acttt----------tt------cgtc---tttttttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g CS217 aattcagagaaaccctgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-ttttttg-----------aaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaatttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------atcattcactccatcggttg-------atagataacggattaatcggacaagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca--------ttggaatgattaacaatccaaatcattacttgaactgaaacgtacttt-aacgt-------acttt----------tt------cgtcttttttttttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g NCsn1 aattcagagaaaccctggaaaaaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t-------------------------------------------------------------------------------------------------gttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataat-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttctagttaagaggaaaatccgtcgactttcgaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggattgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caaacct-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g TN159 aattcagagaaaccctgg-aaaaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------t-------------------------------------------------------------------------------------------------gttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataat-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatagttaagaggaaaatccgtcgactttcgaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa----tttttttcttttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaagaatcccca-ttggaaattggaatgattaacaatccaaatcattacttggattgaaacgtacttt-aacgt-------acttt----------tt------cgtc---------tt--------ttttttaatt-gacatagacc-caaacct-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g MC2148 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtt-cgactccctaattattttatcttattctcccttttcgttaacggttc-aaattcgttatctttctcattcattttcattcggttctttcacaaacctgaa-tttcttttttcttttcccaagttttgtgatagatatgatagacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggattgattaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------ttttt---cgtc-------tttt--------ttttttaatt-gacatagacc-caagcca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g QL12745 ----------aaccctgg---aaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcg-----------aaaacaaagttcataaagacagaat-a-----agaaaggataggtgcagaga--ctcaatggaagcttttctaataaatggagttgac-tg-tgttgcattagtt-tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tttatttatatttttatttatatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatttttctcattcattttcattcggttctttcacaaacctaat--ttttttttttgtttcccaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaaattggaatgcttaacaatccaaatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc------ttttt--------ttttttaatt-gacagagacc-caagcca-tt--------------------------------------------------- JB10171 aattcagagaaaccctgg---aaaaaaagatgggcaatcctg-ag-ccaaatcctg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttccg----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtatta-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataac-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggtttaaaattcgttatctttctcattcattttcattcg---------------------------------------------------------------------------------------------------------------------------cacaaacctgatcattacttggactgaaacgtacttt-aacgt-------acctt----------tt------cgtc------ttttt--------ttttttaatt-gacatagacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g JB9908 aattcagagaaaccctgg-aaaaaaaaaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-tgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcaa----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgatgccccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactcaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataat-------tcggacgagaataaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaatggttcaaaattcgttatctttctcattcattttcactcg------------------------------------------------------------------------------------------------------------------------------gttctttatcattacttggactgaaacgtacttt-aacgt-------acttt----------tt------cgtc--------ttt--------ttttttaatt-gaca-agacc-caaacca-tttagtaaa----------atgagaaaga-cgacgcat-cggaaa-tggtc-g HB94 aattcagagaaaccctgg---aataagaaatgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaa-aaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaatggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaacctt----------tcg-ttaaaactccag----------------------aaaagc-------taaagt------aaagg----------------ataaccct-at-------------------------atacatac--atatacgtactgaaagattatctcaaatgattaataattaatattaatgacgacccgaatcggtattt-t------------t---------t-ta------------------tatttat----------------atgaaaaatgaaataaaatcaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatagtctg-------atcgataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaacaaggaaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatcccc-aaaaagggcgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatcttgctca------ttcattcgattctttcacaaacctgaa----tttttttcttttcacaagtcttgtgatagatatgatacacatgcaaatga-gcatctttgagt-aaaacaaggaatcccca-ttggaa------------------------------------------------------------------------------------------------------------------aatt-gacatagacc-caagcca-tttagtaaa----------atgaggaaga-cgacacat-cggaaa-tggtc-g McPh10218 aattcagagaaaccctgg---aataaaaaatgggcaatcctg-ag-ccaaatccag-tttttcgaaaa------caaaa-aaggttcataaagacagaat-aaaaataaaaaggataggtgcagaga--ctcaacggaagctgttctaacaaatggagttaac-tg-ccttgcat------tagtaaagaaaaggaatcctttcgttaaaatcg-ttaaaactacag----------------------aaaagc-------taaagt------aaaag----------------ataactct-at-------------------------atacatacctatatgtgtactgaaagactatctcaaata-------------attaatgacgacccgaatctgtattt-t------------t---------t-ta------------------tatttag----------------aggaaaaatgaaataaaataaaaagaat--ttcgat--tccaagttgaagaaaagatcgaatattacttgatcaaagcattcactccatagtctg-------atagataactgattaatcggacgagaataaagatagagtcccattctac------atgttaatatcgacaacaaggcaatttatag-taagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaagggcgtt-cgactccctaatta-tttatcttattctctcttttcgttaacggttcaaaactcattatctttctca------ttcattcggttctttcacaaacctgaa----tttttttcttttcacaagtcttgtgatagatatgctacacatacaactga-gcatctttgagt-aaaacaaggaatcccca-ttggaaatttgaatgattaacaatcgaaatcattattcggactgaaatgtacgaa-gtcat-------c--------------tt-----------------------------ttttttaatt-gacatagccc-caagtca-tttagtaaa----------atgaggaaga-cgccgtgt-cggaaa-tggtc-g GA2167 ------------------------------cgggcaatcctg-ag-ccaaatccgg-tttttcgaaaa------caaaacaaagttcataaagacagaat-a-----aaaaaggataggtgcagaga--ctcaagggaagctgttctaataaatggagttgac-tg-cgttgcat------tagtaaagtaaaggaaccct----------tcg-ttaaaacttcag----------------------aaaaac-------taaagt------aaaggataaccctatatacatataaccct-at-------------------------atacatac------------tgaaagactatctcaaatg-------------attaatgacgacccgaatcggtattc-t------------t---------t-tt------------------tatttat----------------atgaaaaatgaaataaactaaaaatattgaatcgat--tccaagttgaagaaaaaatcga-------ttgatcaaatcattcactccatcggttg-------atagataactgattaatcggacgagactaaagatagagtcccattctac------atgttaatatcgacaagaaggaaatttatag-tgagaggaaaatccgtcgactttagaaatcgtgagggttcaagtccctctatccccaaaaaaggccgtt-cgactccctaatta-tttatcttattctcccttttcgttaacggttcaaaattcgttatctttctcattcattttcatttggttctttcacaaacctgaa-ttttttttttcttttcccaagtcttgtgatagatatgatacacatgc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; begin mrbayes; set nowarn = yes; lset nst = mixed rates = gamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 50000000 relburnin = no diagnfreq = 100000 printfreq = 10000 samplefreq = 10000 nchains = 4 temp = 0.05; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1120; END; BEGIN TREES; Title trnL-F_MAFFT_BI; LINK Taxa = Taxa; TRANSLATE 1 MS2592, 2 RO18, 3 RV58, 4 RO32, 5 RO31, 6 JV2549, 7 RV23, 8 GW95, 9 GR38, 10 GW4, 11 CJ3314, 12 EK165, 13 RV94, 14 RV21, 15 RV100, 16 GA2112, 17 RV54, 18 RV83, 19 GA2174, 20 GA2109, 21 GA2116, 22 JW5155, 23 TA3364, 24 RO29, 25 JW5388, 26 CJ6241, 27 RV60, 28 GA2110, 29 RV42, 30 GA2119, 31 GA2123, 32 CJ7011, 33 CJ6729, 34 GA2337, 35 GA2180, 36 GAsn1, 37 BS2591, 38 GA2208, 39 FB3, 40 RV39, 41 RV87, 42 RV50, 43 RV121, 44 RV122, 45 QL12962, 46 GA2108, 47 RV30, 48 CJ10470, 49 CJ6717, 50 RO12, 51 GA2178, 52 CJ10522, 53 RV62, 54 RO13, 55 JM38, 56 GA2111, 57 RV15, 58 RV72, 59 RV32, 60 RV48, 61 GA2115, 62 GS7751, 63 GA2118, 64 JW4419, 65 JW4451, 66 GA2122, 67 LC567, 68 FB11, 69 FB9, 70 BS2664, 71 JW4640, 72 GA2113, 73 GS8294, 74 FB12, 75 GS327, 76 RV55, 77 DH2964, 78 RG5541, 79 RV75, 80 CJsn1, 81 RV59, 82 LC578, 83 RV119, 84 FB6, 85 GA2107, 86 JW4382, 87 JW5172, 88 RV43, 89 JL3197, 90 RO42, 91 TA3620, 92 JB10128, 93 GW21, 94 JB07, 95 GA2121, 96 RV80, 97 ATBP610, 98 GA2104, 99 RV49, 100 RO41, 101 RV95, 102 TS2859, 103 QL13003, 104 GA2117, 105 GW113, 106 AG66982, 107 JPS5679, 108 JPS9541, 109 JPS9529, 110 JPS9543, 111 PM9505, 112 FB15, 113 RV63, 114 FJB16000, 115 JW4474, 116 GA2120, 117 RV40, 118 FB13, 119 RV134, 120 HB3192, 121 MC2149, 122 GW12, 123 MC582, 124 CS217, 125 NCsn1, 126 TN159, 127 MC2148, 128 QL12745, 129 JB10171, 130 JB9908, 131 HB94, 132 McPh10218, 133 GA2167; TREE con_50_majrule = (1:0.077543,(2:0.037614,3:0.037416,4:0.038876,5:0.03845,33:0.100808,43:0.078359)0.97:0.074863,(((((6:0.037608,8:0.037805)1.00:0.075196,7:0.037778,32:0.081885,38:0.116326)0.99:0.111633,((9:0.040034,10:0.038165)0.99:0.079935,11:0.12106,((24:0.03789,25:0.039524,26:0.039324)1.00:0.119527,((27:0.040143,34:0.038579,37:0.04937)0.78:0.092316,28:0.076899,29:0.038968,30:0.06793,31:0.270643,35:0.044101,36:0.040185,133:0.045572)0.88:0.075653)0.99:0.080205)0.94:0.075176,(((12:0.04013,45:0.163202)0.95:0.075572,13:0.037406,14:0.106923,15:0.038656,16:0.038788,17:0.072026,44:0.079031)1.00:0.152481,(52:0.042114,53:0.042669,54:0.041547,55:0.066987)1.00:0.170403)1.00:0.115067,((18:0.03199,20:0.038811,21:0.03825,22:0.038059,23:0.038342,39:0.033347,(40:0.06991,41:0.038528)0.56:0.068581,42:0.040911)0.63:0.073597,19:0.167663)1.00:0.306989,((46:0.030918,47:0.031021,119:0.06604)1.00:0.273301,(71:0.036125,72:0.036308,73:0.036146,74:0.185514,75:0.03928)0.84:0.0759)0.99:0.109434,(48:0.072495,49:0.094665,50:0.035636,51:0.202032)1.00:0.236872,((((76:0.027727,(77:0.054696,80:0.048529)0.52:0.050784,81:0.091266)0.98:0.057311,78:0.027659,79:0.019321,83:0.040088)1.00:0.1247,82:0.115579,84:0.152167)0.89:0.088513,(86:0.060479,87:0.031851)1.00:0.111369,(((89:0.124109,105:0.067003)0.96:0.128789,((90:0.049103,91:0.038614)1.00:0.304178,97:0.040917)0.94:0.075477,(((92:0.077066,93:0.037363,94:0.038824)1.00:0.115954,130:0.387581)0.97:0.154494,(95:0.071234,96:0.037699,(98:0.111754,99:0.046255)0.99:0.116637)1.00:0.159106)0.59:0.072586,(125:0.087718,126:0.044138)1.00:0.225236,129:0.466349)0.99:0.11712,(((100:0.033753,101:0.03425)0.99:0.069813,102:0.069962,103:0.095342,104:0.219788)1.00:0.177093,128:0.324309)1.00:0.136388)0.88:0.07553,((106:0.339431,(120:0.09287,121:0.270829)0.99:0.194761,127:0.227365)0.89:0.129573,(122:0.071276,123:0.038078,124:0.040667)1.00:0.258825)0.67:0.086073,((107:0.189751,108:0.194101)0.95:0.113345,(109:0.037606,110:0.348467,111:0.297267)1.00:0.113493,(131:0.376892,132:1.77271)1.00:0.511403)0.95:0.156006)0.94:0.145643,(85:0.156137,(117:0.056159,118:0.121678)1.00:0.169516)1.00:0.25282,88:0.195198,(((112:0.121981,113:0.041154)0.63:0.0996,115:0.038648)0.99:0.113698,(114:0.346926,116:0.04103)1.00:0.169612)0.97:0.146814)0.58:0.076577,((56:0.042857,58:0.075494,59:0.035885,60:0.036184,61:0.039984,67:0.039052,(68:0.250295,69:0.093616)0.91:0.131135)0.87:0.075509,57:0.114243,62:0.038331,(63:0.039638,(64:0.038403,65:0.038864)0.99:0.0774)1.00:0.154612,66:0.078086)1.00:0.152398)0.75:0.084215,70:0.19578)0.57:0.063954); TREE con_50_majrule = (1:0.077543,(2:0.037614,3:0.037416,4:0.038876,5:0.03845,33:0.100808,43:0.078359):0.074863,(((((6:0.037608,8:0.037805):0.075196,7:0.037778,32:0.081885,38:0.116326):0.111633,((9:0.040034,10:0.038165):0.079935,11:0.12106,((24:0.03789,25:0.039524,26:0.039324):0.119527,((27:0.040143,34:0.038579,37:0.04937):0.092316,28:0.076899,29:0.038968,30:0.06793,31:0.270643,35:0.044101,36:0.040185,133:0.045572):0.075653):0.080205):0.075176,(((12:0.04013,45:0.163202):0.075572,13:0.037406,14:0.106923,15:0.038656,16:0.038788,17:0.072026,44:0.079031):0.152481,(52:0.042114,53:0.042669,54:0.041547,55:0.066987):0.170403):0.115067,((18:0.03199,20:0.038811,21:0.03825,22:0.038059,23:0.038342,39:0.033347,(40:0.06991,41:0.038528):0.068581,42:0.040911):0.073597,19:0.167663):0.306989,((46:0.030918,47:0.031021,119:0.06604):0.273301,(71:0.036125,72:0.036308,73:0.036146,74:0.185514,75:0.03928):0.0759):0.109434,(48:0.072495,49:0.094665,50:0.035636,51:0.202032):0.236872,((((76:0.027727,(77:0.054696,80:0.048529):0.050784,81:0.091266):0.057311,78:0.027659,79:0.019321,83:0.040088):0.1247,82:0.115579,84:0.152167):0.088513,(86:0.060479,87:0.031851):0.111369,(((89:0.124109,105:0.067003):0.128789,((90:0.049103,91:0.038614):0.304178,97:0.040917):0.075477,(((92:0.077066,93:0.037363,94:0.038824):0.115954,130:0.387581):0.154494,(95:0.071234,96:0.037699,(98:0.111754,99:0.046255):0.116637):0.159106):0.072586,(125:0.087718,126:0.044138):0.225236,129:0.466349):0.11712,(((100:0.033753,101:0.03425):0.069813,102:0.069962,103:0.095342,104:0.219788):0.177093,128:0.324309):0.136388):0.07553,((106:0.339431,(120:0.09287,121:0.270829):0.194761,127:0.227365):0.129573,(122:0.071276,123:0.038078,124:0.040667):0.258825):0.086073,((107:0.189751,108:0.194101):0.113345,(109:0.037606,110:0.348467,111:0.297267):0.113493,(131:0.376892,132:1.77271):0.511403):0.156006):0.145643,(85:0.156137,(117:0.056159,118:0.121678):0.169516):0.25282,88:0.195198,(((112:0.121981,113:0.041154):0.0996,115:0.038648):0.113698,(114:0.346926,116:0.04103):0.169612):0.146814):0.076577,((56:0.042857,58:0.075494,59:0.035885,60:0.036184,61:0.039984,67:0.039052,(68:0.250295,69:0.093616):0.131135):0.075509,57:0.114243,62:0.038331,(63:0.039638,(64:0.038403,65:0.038864):0.0774):0.154612,66:0.078086):0.152398):0.084215,70:0.19578):0.063954); END; BEGIN TREES; Title trnL-F_MAFFT_ML; LINK Taxa = Taxa; TRANSLATE 1 MS2592, 2 RO18, 3 RV58, 4 RO32, 5 RO31, 6 JV2549, 7 RV23, 8 GW95, 9 GR38, 10 GW4, 11 CJ3314, 12 EK165, 13 RV94, 14 RV21, 15 RV100, 16 GA2112, 17 RV54, 18 RV83, 19 GA2174, 20 GA2109, 21 GA2116, 22 JW5155, 23 TA3364, 24 RO29, 25 JW5388, 26 CJ6241, 27 RV60, 28 GA2110, 29 RV42, 30 GA2119, 31 GA2123, 32 CJ7011, 33 CJ6729, 34 GA2337, 35 GA2180, 36 GAsn1, 37 BS2591, 38 GA2208, 39 FB3, 40 RV39, 41 RV87, 42 RV50, 43 RV121, 44 RV122, 45 QL12962, 46 GA2108, 47 RV30, 48 CJ10470, 49 CJ6717, 50 RO12, 51 GA2178, 52 CJ10522, 53 RV62, 54 RO13, 55 JM38, 56 GA2111, 57 RV15, 58 RV72, 59 RV32, 60 RV48, 61 GA2115, 62 GS7751, 63 GA2118, 64 JW4419, 65 JW4451, 66 GA2122, 67 LC567, 68 FB11, 69 FB9, 70 BS2664, 71 JW4640, 72 GA2113, 73 GS8294, 74 FB12, 75 GS327, 76 RV55, 77 DH2964, 78 RG5541, 79 RV75, 80 CJsn1, 81 RV59, 82 LC578, 83 RV119, 84 FB6, 85 GA2107, 86 JW4382, 87 JW5172, 88 RV43, 89 JL3197, 90 RO42, 91 TA3620, 92 JB10128, 93 GW21, 94 JB07, 95 GA2121, 96 RV80, 97 ATBP610, 98 GA2104, 99 RV49, 100 RO41, 101 RV95, 102 TS2859, 103 QL13003, 104 GA2117, 105 GW113, 106 AG66982, 107 JPS5679, 108 JPS9541, 109 JPS9529, 110 JPS9543, 111 PM9505, 112 FB15, 113 RV63, 114 FJB16000, 115 JW4474, 116 GA2120, 117 RV40, 118 FB13, 119 RV134, 120 HB3192, 121 MC2149, 122 GW12, 123 MC582, 124 CS217, 125 NCsn1, 126 TN159, 127 MC2148, 128 QL12745, 129 JB10171, 130 JB9908, 131 HB94, 132 McPh10218, 133 GA2167; TREE Imported_tree_0 = (((2:7.1259629166308E-7,3:7.1259629166308E-7)79:7.1259629166308E-7,(5:7.1259629166308E-7,((43:0.0013202688169124703,33:0.0038380884982915225)77:7.1259629166308E-7,4:7.1259629166308E-7)72:7.1259629166308E-7)89:7.1259629166308E-7)71:0.0012171933390503773,(1:0.0012232249498756698,((85:0.00389352264712612,(118:0.0027480734642424056,117:7.1259629166308E-7)97:0.004816390258406234)100:0.007982775165229937,(((88:0.005134288150992916,(51:0.005689214482255283,((49:0.0025563529564561877,50:7.1259629166308E-7)81:7.1259629166308E-7,48:0.0012408558459659524)45:7.1259629166308E-7)94:0.006214297296692084)26:0.0013265774567198744,(((((7:7.1259629166308E-7,((6:7.1259629166308E-7,8:7.1259629166308E-7)62:0.0012367239283869547,(32:0.0013388751203290117,38:0.0025566602823629578)64:7.1259629166308E-7)2:7.1259629166308E-7)86:0.002476612561838632,((114:0.01022590928149735,116:7.1259629166308E-7)96:0.004441722633113415,(115:7.1259629166308E-7,(113:7.1259629166308E-7,112:0.00400356673857869)48:7.1259629166308E-7)80:0.0027502837918273156)72:0.004040496030031277)37:7.1259629166308E-7,((((65:7.1259629166308E-7,64:7.1259629166308E-7)74:0.0012689656284779807,63:7.1259629166308E-7)97:0.003817489729503793,(57:0.002519891755657683,(62:7.1259629166308E-7,(66:0.0012745606299724781,(61:7.1259629166308E-7,(58:0.0012800242910020307,(56:7.1259629166308E-7,(60:7.1259629166308E-7,((67:7.1259629166308E-7,(68:0.006814985443087709,69:0.0015269679136449108)74:0.0031804801281791963)57:7.1259629166308E-7,59:7.1259629166308E-7)22:7.1259629166308E-7)34:8.363741299253494E-4)39:0.0032103954001970994)37:7.1259629166308E-7)30:0.001305913800182112)3:7.1259629166308E-7)4:7.1259629166308E-7)11:7.1259629166308E-7)78:0.003942616380454296,((71:7.1259629166308E-7,((73:7.1259629166308E-7,72:7.1259629166308E-7)71:7.1259629166308E-7,(75:7.1259629166308E-7,74:0.00509610584783057)51:7.1259629166308E-7)35:7.1259629166308E-7)66:0.0012345647138305806,(119:0.0013231655116628202,(46:7.1259629166308E-7,47:7.1259629166308E-7)83:7.1259629166308E-7)99:0.007498770471652728)66:0.0012497443226366786)47:0.0012969101142785793)6:7.1259629166308E-7,((((52:7.1259629166308E-7,53:7.1259629166308E-7)40:7.1259629166308E-7,54:7.1259629166308E-7)98:7.1259629166308E-7,55:7.1259629166308E-7)94:0.00431768871095582,((12:7.1259629166308E-7,45:0.00404551432989267)60:0.0012370988704179906,(((16:7.1259629166308E-7,(13:7.1259629166308E-7,(44:0.001320749852056932,14:0.0024826528452916398)46:2.54677299817713E-6)29:0.0012329714631625793)25:7.1259629166308E-7,17:0.0012833596208698895)46:7.1259629166308E-7,15:7.1259629166308E-7)21:7.1259629166308E-7)93:0.0037277639261290977)79:0.0024766631703540564)1:7.1259629166308E-7,(((24:7.1259629166308E-7,(26:7.1259629166308E-7,25:7.1259629166308E-7)93:7.1259629166308E-7)95:0.002481709121675916,(36:7.1259629166308E-7,((((((30:0.0012561394447128012,35:2.8696808846746417E-4)27:6.099405254623876E-4,31:0.007729458921803722)9:1.793276253082596E-4,133:7.1259629166308E-7)7:8.49371952140647E-6,28:0.0012697612270636508)8:7.41334723461149E-5,29:7.1259629166308E-7)25:9.319569583122706E-5,(34:7.1259629166308E-7,(37:7.1259629166308E-7,27:7.1259629166308E-7)48:7.1259629166308E-7)55:0.002493602895113632)46:7.1259629166308E-7)76:0.0012229736525216498)69:0.001233411805899988,(11:0.0026626651491643435,(10:7.1259629166308E-7,9:7.1259629166308E-7)88:0.0012924908983758662)56:7.1259629166308E-7)68:0.0012273924377981121)4:7.1259629166308E-7)0:7.1259629166308E-7,((((20:7.1259629166308E-7,21:7.1259629166308E-7)97:7.1259629166308E-7,((23:7.1259629166308E-7,(22:7.1259629166308E-7,(39:7.1259629166308E-7,((41:7.1259629166308E-7,40:0.0012618563082396517)62:0.001213792133108149,42:7.1259629166308E-7)35:4.87060148241243E-5)56:0.002491746691008872)31:7.1259629166308E-7)57:7.1259629166308E-7,18:7.1259629166308E-7)3:7.1259629166308E-7)52:0.001199673215082725,19:0.0037271851613486498)100:0.008673900140012238,((((128:0.010031440216580432,((104:0.006522416148270167,((100:7.1259629166308E-7,101:7.1259629166308E-7)82:0.0012502533812789034,102:0.0012537724341008373)72:7.1259629166308E-7)63:7.1259629166308E-7,103:0.0025032761034368784)96:0.004544933255408139)85:0.003157957426611987,(129:0.014856926568062078,((105:7.1259629166308E-7,89:0.0032096425549159365)76:0.003786256808476003,((97:7.1259629166308E-7,(90:7.1259629166308E-7,91:7.1259629166308E-7)100:0.009027471322841965)65:0.0012541454504069838,((((99:7.1259629166308E-7,98:0.0026097555913626217)67:0.0026042085619873635,(95:0.001295777930015076,96:7.1259629166308E-7)62:7.1259629166308E-7)98:0.003931890454803366,(130:0.012034779817874567,(92:0.0012562903347262178,(94:7.1259629166308E-7,93:7.1259629166308E-7)81:7.1259629166308E-7)90:0.002487536398022461)78:0.0038392771710583397)53:0.0012413804234624242,(125:0.0016154406766803627,126:7.1259629166308E-7)99:0.006520444831684875)51:7.1259629166308E-7)30:7.1259629166308E-7)42:7.1259629166308E-7)70:0.0024923017517140007)53:0.0012903532232725443,((86:0.00125104006741772,87:7.1259629166308E-7)81:0.002472314649960303,((82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END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1120; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1120; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1389011086743; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7370315936761109988; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7961207907136424650; mqVersion 274; checksumv 0 2 2023436910 null getNumChars 1120 numChars 1120 getNumTaxa 133 numTaxa 133 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 2387508.0 sumSquares 1.5089436652294413E22 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 230; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;