#NEXUS [written Mon Jan 06 13:26:57 CET 2014 by Mesquite version 2.74 (build 550) at D0135944/10.85.9.195] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=133; TAXLABELS HB94 McPh10218 MS2592 RO18 RV58 RO32 RO31 CJ6729 RV121 BS2664 RO29 JW5388 CJ6241 GA2337 BS2591 RV60 GA2167 GA2123 RV42 GA2119 GA2110 GAsn1 GA2180 GR38 GW4 CJ3314 CJ10522 RV62 RO13 EK165 QL12962 RV54 GA2112 RV100 RV122 RV21 RV94 GA2107 RV40 FB13 RV43 CJ10470 RO12 CJ6717 GA2178 JV2549 GW95 RV23 GA2208 CJ7011 FB15 JW4474 RV63 RV83 JW5155 GA2109 GA2116 FB3 RV50 RV87 RV39 TA3364 GA2174 FJB16000 GA2120 RV15 RV72 RV32 GA2111 LC567 GA2115 GA2122 GS7751 GA2118 JW4419 JW4451 FB9 RV48 HB3192 MC2148 FB11 JW4640 FB12 GS327 GS8294 GA2113 GA2108 RV30 RV134 GW12 CS217 MC582 JM38 JW4382 JW5172 RV55 DH2964 CJsn1 RV59 RV75 RV119 RG5541 LC578 FB6 MC2149 AG66982 JB10171 QL12745 RO41 RV95 GA2117 TS2859 QL13003 JL3197 GW113 GA2104 RV49 GA2121 RV80 JB10128 GW21 JB07 JB9908 NCsn1 TN159 ATBP610 RO42 TA3620 JPS5679 JPS9541 JPS9529 JPS9543 PM9505 ; END; BEGIN CHARACTERS; TITLE trnL-F_PRANK; DIMENSIONS NCHAR=1356; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX HB94 ---AATTCAGAGAAACCCTGG--A---ATA-AGAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AA-AAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCTTT----------CGTT-AAAACTCCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C----------------------ATATACGTACTGA-------------------AAGATTATCTCAAATGATTAATAATTAATATTAATGACGACCCGAATCGGTATTTTTT-TAT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------ATCAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATAGTCTGATCGATA-------AC-------TGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAACAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAA-AAA-GGGCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTGCTCATTCAT------TCGATTCTTTCACAAACCTGAA-TT-----T-T--T-T-T--CTTTTCACAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGGAAG----------ACGACACAT-C---------GGAAATGGT-----CG- McPh10218 ---AATTCAGAGAAACCCTGG--A---ATA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCAGTTTTT-CGAAAACAA-----------AA-AAGGTTCATAAAGACAGAAT-AAAAATAAAAAGGATAGGTGCAG-AGACT-CAACGGAAGCTGTTCTAACAAATGGAGTTAA----C-TG-CCTTGCA-----TT------AGTAAAGAAAAGGAATCCTTTCGTTAAAATCGTT-AAAACTACAGAAAAGC-------TAA----------------------AGTA----AAA------GAT----------------AACTCTA-TATA---------------CATA------CCT--------------------ATATGTGTACTGA-------------------AAGACTATCTCAAATAATTA-------------ATGACGACCCGAATCTGTATTTTTT-TAT---------AT-TTA---------GA------------G------------------GAAAAATG-----A----------------AATAAA----------------ATAAAAA----GAATTTCGAT--TCCAAGTTGAAGAAAAGATCGAATATTACTTGATCAAAGCATTCACTCCATAGTCTGATAGATA-------AC-------TGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAACAAGGCAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGGCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCTCTTTTCGTTAACGGTTCAAAACTCATTATCTTTCTCATTCAT------TCGGTTCTTTCACAAACCTGAA-TT-----T-T--T-T-T--CTTTTCACAAGTCTTGTGATAGATATGCTACACATACAACTGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTTGAATGATTAACAATCGAAATCATTAT-------TCGGACTGAAA----------TGTACGAAGTCATCTTT--------------------------------------------------TT---T--TT-----------------------------------------------AA-TTGACA-TAGCCCCAAGTCA-TT---------T----------AG----------TAAA-----ATGAGGAAG----------ACGCCGTGT-C---------GGAAATGGT-----CG- MS2592 ---AATTCAGAGAAACCCTGG------AAA-AAGA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGAACCAAGCCA-TTTAGTAAAATT----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RO18 ---AATTCAGAGAAACCCTGG------AAA-AAGA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATTGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T---TT-CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TTT----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TTTAGTAAAATT----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RV58 ---AATTCAGAGAAACCCTGG------AAA-AAGA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATTGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-TT-CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TTT----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TTTAGTAAAATT----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RO32 ---AATTCAGAGAAACCCTGG------AAA-AAGA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATTGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TTT----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TTTAGTAAAATT----------AG----------TAAA-----ATGAGAAAG----------ACGACGC------------------------------ RO31 ---AATTCAGAGAAACCCTGGA-----AAA-AAGA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATTGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-TT-CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TTT----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TTTAGTAAAATT----------AG----------TAAA-----ATGAGAAAG----------ACGACGCA----------------------------- CJ6729 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATTGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAA?-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCG?TATCTTTYTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-TT-CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAAAA---CAAGGAATCCCCA-TTGGRAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TTT----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TTTAGTAAAATT----------AG----------TAAA-----ATGAGAAAG----------?CGACGCAT-C-----?---GGAAATG?--------- RV121 ----------------CCTGG------AAA-AAGA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATTGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-TT-CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TTT----------------------------------T-----------AA-TTGACA-GAGACCCAAGCCA-TT------------------------------------------------------------------------------------------------- BS2664 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AG-CT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAGAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTT-GGCTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T------CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TTTAGTAAAATT----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGG------CG- RO29 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A-A--CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAAGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCTCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JW5388 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAAGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCTCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- CJ6241 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAAGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCTCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGA?------------------------------------------------- GA2337 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A-A--CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCGTCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACCTCAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG-A---------CGACGCAT-C-------------------------- BS2591 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGT?CAG-AG-CT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTT-SA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCGTCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG-A---------CGACGCAT-C---------G------G------CA- RV60 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCGTCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGA?------------------------------------------------- GA2167 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GATAACCCTATATACATATAACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GA2123 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGT-CAG-AG-CT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG-----------CGACGCAT-C---------GGAAATG?------CG- RV42 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCAGTTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG-----------?----------------------------------- GA2119 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTATTTTATTTATA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGCA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATTCGACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- GA2110 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTACCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- GAsn1 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA---CC-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAA-------AAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG--A--------CGACGCAT-C---------GGAAATGGT-----CG- GA2180 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAAGGGAAGCTGTTCTAATAAATGGAGTTGA----CTTG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTTATTTATTTTAT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TGAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-TTT--TTT-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-AATT-GACATAGACC-CAAGCCA-TTTAGTAAA--------------------------------------------------------------------------------ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- GR38 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT------------------------------------------------------------------------------------------------------------------ATGAGAAAG----------ACGACGCAT-C---------AGAAATGGT-----CG- GW4 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT------------------------------------------------------------------------------------------------------------------ATGAGAAAG----------ACGACGCAT-C---------AGAAATGGT-----CG- CJ3314 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GTCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTTGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATTCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT------------------------------------------------------------------------------------------------------------------ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- CJ10522 ---AATTCAGAGAAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCATTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT---T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATGGT-----CG- RV62 ---AATTCAGAGAAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCATTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT---T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATGGT-----CG- RO13 ---AATTCAGAGAAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCATTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT---T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATGGT-----CG- EK165 ---AATTCAGAGAAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGATTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- QL12962 ---AATTCAGAGAAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAGAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGATTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTATCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA------------------------------------------------------------------------------------------------------------------ RV54 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T-TT------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------?CGACGCATC?---------GGAAATGG------?-- GA2112 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T-TT------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------C-GACGCAT-C---------GGAAATGG------CG- RV100 ---AATTCAGAGAAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GG--------------- RV122 --------------ACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-GAGACCCAAGCCA-TT---------T--------------------------------------------------------------------------------------- RV21 ---AATTCAGAGGAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCTT-C---------CGAAATGGT-----CG- RV94 ---AATTCAGAGGAACCCTGG------AAA-AA-A-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTAGCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TTCT-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTAATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGC-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- GA2107 -------------------------------------------GGCAATCCTG-A---G--CCAAATCCGG?TTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------CGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCAGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATAGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTCAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTGA?TCTCCCTTTTCGTTAATGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-C-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGGAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT----------------------------------TT-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATG---------- RV40 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------CGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAACAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATAGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTCTAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTGATTCTCCCTTTTCGTTAATGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAA-CCTGAA-TT-T-C-T-T--T-T-T--CTTTTCCC?AGTCTTGTGATAGATATGATACACATGC?AATG?-GCATCTTTGAGT-AAA-A-?-C?AGGAATCCCC?-TTGG?AATTGG?ATGATTAAC?ATCC?AATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------TT--T--TT----------------------------------TT-----------AA-TTGACA-TAGACCCAAGCCAGTT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------A?AAATGGT-----GGG FB13 -----------------------------------------CGGGCA?TCCTG-A--AG--CCAAATCCGGTTTTTTCGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------CGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAACAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATAGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTCTAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTGATTCTCCCTTTTCGTTAATGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-C-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGC?AATG?-GCATCTTTG?GT-AAA-A-A-CAAGG?ATCCCC?-TTGG?AATTGG?ATGATTAAC?ATCC?AATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T?--?--TT----------------------------------TT-----------AAGTTGACA-TAGACC------------------------------------------------------------------------------T-C-------------------------- RV43 ---AATTCAGAGAAACCCTGG------AAA-AAAA------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAATAAAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTTATTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTATAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGTTTCTTTCACAAACCTGAA-TT-T-C-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCG-TTGTAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT----------------------------------TT-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGAC-------------------------------- CJ10470 ---AATTCAGAGAAACCCTGG------AAAAAAAA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAATAAAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTG-AAAACTTCAGAAAAAC-------TAA----------------------AGTC----AA--------------------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACTTGAA-T----T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCG-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT----------------------------------TT-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RO12 ----ATTCAGAGAAACCCTGG------AAA-AAAA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAATAAAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTG-AAAACTTCAGAAAAAC-------TAA----------------------AGTC----AA--------------------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-T----T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCG-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTAAACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT----------------------------------TT-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGA-------------------------------------------------- CJ6717 -----------------------------------------CGGGCA?TCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAATAAAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTG-AAAACTTCAGAAAAAC-------TAA----------------------AGTC----AA--------------------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-T----T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A--ACAAGGAATCCCCG-TTGG?AATTGG?ATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTAAACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT----------------------------------TT-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------?CGACGCAT-C--------AGGAAATGGT-----CG- GA2178 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAATAAAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTG-AAAACTTCAGAAAAAC-------TAA----------------------AGTAAAAAAA--------------------------AAACCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCATT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TC-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCG-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGT?-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JV2549 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAGACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCAAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-G--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAA------------- GW95 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAGACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCAAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-G--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RV23 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAGACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCAAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCACTTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- GA2208 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAATGTAAAGGAACCCTT----------CGTT-AAGACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCAAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTTAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAACGTACTTTAACGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- CJ7011 -----------------------------------------CGGGCA?TCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAGACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACTCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCAAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T------TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----A?------------------------------------------------------ FB15 -----------------------------------------CGGGCA?TCCTG-A-A-G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAAT?GGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAA----------------------------------TCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTTCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTT-TCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGTCC-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C-------C-GGAAATGGT----GCG- JW4474 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA--C-C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--T-----------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATTGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAA----------------------------------TCGA-------TTGATCAAATCATTCACTCCATCG?TTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTTCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTT-TCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGTCC-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RV63 AAA--------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATTGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAA----------------------------------TCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTTCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTT-TCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGTCC-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TA--------------------------------------------------------------- RV83 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A--AATGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAATGAAAAATGAAATAAACTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-TTT--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JW5155 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A--A-TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGC------------------------------ GA2109 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TS-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- GA2116 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGG------CG- FB3 -----------------------------------------TGGGCA?TCCTG--A--G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----AAATAAATGAAAAATGAAATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-?T---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C------A--GAAAATGGT---G-CG- RV50 -----------------------------------------TGGGCA?TCCTG-AA--G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGT?CTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAG?------------------------------------------------------------------------------------------------------ RV87 -----------------------------------------TGGGCA?TCCTG-AA--G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTTTAAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C------A--GGAAATGGT---G-CG- RV39 -----------------------------------------TGGGCA?TCCTG-AG--C--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C------C--GGAAATGGT---G-CG- TA3364 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A--A-TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCA----------------------------- GA2174 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A--AACGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CAAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CAGA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTGT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTTAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGCTATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CATAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-G---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- FJB16000 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAGGGAACCCCC----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAA------GAT----------------AATCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATGAAATAA----------------AATAAA----------------CTAAAAA----------------------------------TCGA-------TTGATCAAATCATCCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCAGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTTGTT-TCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TC-T-T-T-T--T-T----CTTTTCCCARGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-CCTTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- GA2120 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA-C--C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATGAAATAA----------------AATAAA----------------CTAAAAA----------------------------------TCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCC----------------------------------------------------------------------------------ACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-CCTTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RV15 ----ATTCAGAGAAACCCTGG------AAA-AAAA-A--AACGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACA----------------AAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AA---------------------------ACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG----A------CGACGCTT-C---------GGAAATGGT-----CG- RV72 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A--A-CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------GTGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCCAA-TTAG----------TAAA-----ATGAGAAA------------------------------------------------ RV32 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------GTGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAAGTTAG----------TAAA-----ATGAGAA-----------------------------------------------?- GA2111 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------GTGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LC567 -----------------------------------------CGGGCA?TCCTG-A---AGCCCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGT?CTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------GTGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG----A------CGACGCAT-T---CA----GGAAATGGT--G--C?- GA2115 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------GTGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATG----G--CG- GA2122 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TGCCGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TATTTTTATTTATAT------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTAAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATG-?-----CG- GS7751 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATAATAGATAACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGG------CG- GA2118 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCTTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCAGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTG-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- JW4419 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCTTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACC?GAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAGTATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCAGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTG-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG---A-------CGACGCAT-C---------GGAAATGGT-----CG- JW4451 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCTTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAGTATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCAGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTG-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG---A-------CGACGCAT-C---------GGAAATGGT-----CG- FB9 -----------------------------------------CGGGC??TCCTGA----G--CCAAATCCGGTTTT?-CGAAAACAA-----------AACAAAGT?CATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGAC?-CAA?GGAAGC?GT?CTAATAAATGGAGTTGA----C-?G-CGT?GC?-----TT------AGTAAAGTAAAGGA?CCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----A?G------GAT----------------A?CCCTA-T?TA---------------C?TA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTAT?CTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------ATTAAA----------------CT-AAAATATTGGA--TCGAT--TCCAAGTTGAAGAAAA-ATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AGTCAAA-TTAGTAAA-----ATGAGAAAG---------A-CGACGCAT-C-A-------G?AAATGGT------G- RV48 -----------------------------------------CGGGC??TCCTGAA---G--CCAAATCCGGTTTT?-CGAAAACAA-----------AACAAAGT?CATAAAGAC?GAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAA?GGAAGC?GT?CTAATAAATGGAGTTGA----C-TG-CGT?GC?-----TT------AGTAAAGTAAAGGA?CCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------A?CCCTA-T?TA---------------C?TA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------GTGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--T------------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AGTCAAAGTTAGTAAA-----A?------------------------------------------------------ HB3192 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-G-A-T-T--T-----------CCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGATTGATTAACAATCCAAATCATTACTTGGACT-------GAAA----------CGTAC---------TTTA-ACGTA-------CTTTTT-----T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG---------A-CGACGCAT-C---------GGAAATGGT-----CG- MC2148 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTC-GACTCCCTAATTATTTT-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAA-TTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAATTT-C-T-T-T--T-T-T--CTTTTCCCAAGTTTTGTGATAGATATGATAGACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGATTGATTAACAATCCAAATCATTACTTGGACT-------GAAA----------CGTAC---------TTTA-ACGTA-------C--TTT-----T-TTTTCGT-C-TTTTT---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG---------A-CGACGCAT-C---------GGAAATGGT-----CG- FB11 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------?GTA----AAG------GAT----------------ATCCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATACTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTATAAATATTGTG--TCGATACCCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACCGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC--------------GAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------TAGTCAAA-TTAG----------TAAA-----ATGAGAAAG---------A-CGACGCAT-C--A------GGAAATGGT-G---CG- JW4640 ---AATTCAGAGAAACCCTGG------AAA-AAA--A----CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----AACCAAAACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCG-----CTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACCCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG--------A--CGACGCAT-C---------GGAAATGGT-----CG- FB12 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----AACCAAAACAAAGTTCATAAAGCCAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCG-----CTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACCCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-------A---CGACGCAT-CA--------GGAAATGGTG----CG- GS327 -----------------------------------------------------------------------------------------------------------------------T-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-T--SGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGRCCCGAATCG-----CTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACCCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTCCGACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- GS8294 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----AACCAAAACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AG-CT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-TG-CGTT-CA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCG-----CTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACCCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- GA2113 -----------------------------------------CGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----AACCAAAACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCG-----CTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACCCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- GA2108 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGACCCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAAATAAGAAAAA--------CTAAAGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTC---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCGTTCACAAACCTGAA-TT-T-T-T-T--T-T-T-TCTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CACGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------------------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGGCGCAT-C---------GGAAATGGT-----CG- RV30 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGACCCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAAATAAGAAAAA--------CTAAAGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTC---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCGTTCACAAACCTGAA-TT-T-T-T-T--T-T-T-TCTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CACGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------------------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----?T----CGGCGCAT-C---------?---------------- RV134 ------TCAGAGAAACCCTGG------AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAAAGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGACCCCTT----------CGTT-AAAACTTAAGAAAAAC-------TAAATAAGAAAAACTAAAAAACTAAAGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTC---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ATTGATTAA-------TCGGACGAGACTAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCGTTCACAAACCTGAA-TT-T-T-T-T--T-T-T-TCTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CACGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------------------AA-TTGACA------------------------------------------------------------------------------------------------------------------ GW12 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-TG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAATTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C---ATAC-------------------------TGA-------------------AAGACTATCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATTCACTCCATCGGTTGATAGATA-------ACGGATTAA-------TCGGACAAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCC--------ATTGGAATGATTAACAATCCAAATCATTAC-------TTGAACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-TTTT---TT-T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGACAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- CS217 ---AATTCAGAGAAACCCTGG-A----AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-TG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAATTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATTCACTCCATCGGTTGATAGATA-------ACGGATTAA-------TCGGACAAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCC--------ATTGGAATGATTAACAATCCAAATCATTAC-------TTGAACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-TTTTTTTTT-T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- MC582 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-TG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAATTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C---ATACTGAATACATACATAC----------TGA-------------------AAGACTATCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATTCACTCCATCGGTTGATAGATA-------ACGGATTAA-------TCGGACAAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAA-AA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCC--------ATTGGAATGATTAACAATCCAAATCATTAC-------TTGAACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-TTTT---TT-T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JM38 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCATTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAATGGT-----CG- JW4382 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGAC---C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGCTAAAGTATAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAGAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTTAATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTATAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-TTT-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCAT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JW5172 ---AATTCAGAGAAACCCTGG------AAA--AAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGCTAAAGTATAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAGAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTTAATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTATAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T--------------------------------------------------------------------------------------- RV55 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----TGGGTAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCTTA-TATA---------------CATATACATAC--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- DH2964 ---AATTCAGAGAAACCCTGG------AAA--AAA-A----TGGGTAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCTTA-TATA---------------CATATACATAC--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-A-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- CJsn1 -----------------------------------------TGGGTAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGT-CAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCTTA-TATA---------------CATATACATAC--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-C-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATG---------- RV59 ---------------------------------------------------------------------------------AAAAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCTTA-TATA---------------CATATACATAC--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-CCGTA-------C----------T-TTTTCGT-C-TTT-T---------T---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------A---------------------------------------------------------------------------- RV75 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----TGGGTAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCCTA-TATA---------------CATATACATAC--------------------------------TGAAAATACATATACATACTGAAAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----C-- RV119 -----------------CTGG------AAA-AAAA-A----TGGGTAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCCTA-TATA---------------CATATACATAC--------------------------------TGAAAATACATATACATACTGAAAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCCAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA------------------------------------------------------------------------------------------------------------------ RG5541 ---AATTCAGAGAAACCCTGG------AAA--AAA-A----TGGGTAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCCTA-TATA---------------CATATACATAC--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCCTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T---------T-AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- LC578 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TAGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTTAA-TT-T-T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------?CGACGCAT-C---------G?--------------- FB6 -----------------------------------------AGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGT?CTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAGGAAAAGGAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTAAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAAT-----CAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCCAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT---T-T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGC?AATGA-GCATCTTTGAGTAAAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------AGAAATGGT-----CG- MC2149 ---AATTCAGAGAAACCCTGG-------AA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGTTTTTT-TG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGCG-AAAACTTAAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATACATACATATA-----CATA------G--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------ATAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCCAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCTCTTTTCGTTAACGGTTCAAAATTCGTTATTTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-A-T-T--T-----------CCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGATTGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C-----TTTTTT-TTTTCGT-C-T-T-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- AG66982 ---AATTCAGAGAAACCCTGG--AA--AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGTTTTTT-TGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----T-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAAC-CTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------G--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTTCATCGGTTGATAGATA-------ACTGATTAA-------TCGGACGAGAATAAAGATAGAGCCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCC-AAAAA-GGCCGTTC-GACTCCCTAATTCTT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCG-TTGGAAATTGAATTGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTGA-ACGTA-------C-----TTTTTTTTTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JB10171 ---AATTCAGAGAAACCCTGG--A---AAA-AAAG-A----TGGGCAATCCTG-A---G--CCAAATCCTGTTTTT-CG-----AAAACAA------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCCGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTATTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTTAAAATTCGTTATCTTTCTCATTCATTTTCATTCG-------CACAAACCT---------------------------------------------------------------------------------------------------------------------------------GATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------C-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T--------T--AA-TTGACA-TAGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- QL12745 -------------AACCCTGG--A---AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAG-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTTTTCTAATAAATGGAGTTGA----C-TG-TGTTGCATTAGTTT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------TTTTTATTTATATTTATATGAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATTTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTAAT-TT-T-T-T-T--T-T-T--TGTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGCTTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T--------T--AA-TTGACA-GAGACCCAAGCCA-TT------------------------------------------------------------------------------------------------- RO41 ---AATTCAGAGAAACCCTGG--A---AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATAGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-----T-T--T-T-T--TGTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTAATATATAC----------T-TTTTCGT-C-TTT-T--------TT-TTT--TT-----------------------------------T-----------AA-TTGACA-TAGATCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACAACGCAT-C---------GGAAATGGT-----CG- RV95 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATAGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-AT?TTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-----T-T--T-T-T--TGTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTAATATATAC----------T-TTTTCGT-C-TTT-T--------TT-TTT--TT-----------------------------------T-----------AA-TTGACA-TAGATCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACAACGCAT-C---------GGAAATGGT-----CG- GA2117 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTCCAGGAGACTTCAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGG?ATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGG?TCTTTCACAAACCTGAA-TT-----T-T--T-T-T--TGTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTAATATATAC----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGATCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CAACGCAT-C---------GGAAATGG------CG- TS2859 ---AATTCAGAGAAACCCTGG--A---AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATGGACAAGAAGGAAATTTATAG-TCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-----T-T--T-T-T--TGTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTAATATATAC----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGATCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACAACGCAT-C---------GGAAATGGT-----CG- QL13003 ---AATTCAGAGAAACCCTGG--A---AAA-AAAAAA----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CG-----AA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCAGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TCAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-----T-T--T-T-T--TGTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTAATATAGAC----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------TCATTTTTT---AA-TTGACA-TAGATCCAAGCGA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACAACGCAT-C---------GGAAATGGT-----CG- JL3197 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTC-GACTCCTTAATTATT-TTATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCG-------CACAAACCTGAA-TT-T---T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TT-TCGT-C-TTT-T--------TT---TT-TT-----------------------------------T----------TAA-TGGACA-TA??CCCAA?CC?-TT---------T----------AG----------TAAA-----A?GA?AAA?----------AC?AC?CAT-C---------GGAAA?GGT-----CG- GW113 ---AATTCAGAGAAACCCCGG--A---AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGTA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAG--------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCTTAATTATT-TTATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCG-------CACAAACCTGAA-TT-T---T-TTTT-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T----------TAA-TTGACA-TAGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- GA2104 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTCCAG-AGCCT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TA-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATCGGTATTCTTT-TTT---------TT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCCAAAAA-GGCCGTTC-GACTCCCTCATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGCA-TT-T---T-T----T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGAGGCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGG------CG- RV49 -----------------------------------------TGGGCA?TCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TA-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATCGGTATTCTTT-TTT---------TT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATAT?GAA--TCGAT--TCCAAGT?GAAGAAAAAATCGA-------TTGATC?AATCATTCACTCCATCGG?TGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCCAAAAA-GGCCGTTC-GACTCCCTCATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGCA-TT-T---T-T----T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----A?------------------------------------------------------ GA2121 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTCCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATCGGTATTCTTT-TTT---------TTTTTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCCAAAAA-GGCCGTTC-GACTCCCTCATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG-----------CGACGCAT-C---------GGAAATGGT-----CG- RV80 -----------------------------------------TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGACCCGAATCGGTATTCTTT-TTT---------TTTTTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCCAAAAA-GGCCGTTC-GACTCCCTCATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAGA----------CGACGCAT-C---------GGAAATGGT-----CG- JB10128 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCTCT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGCCCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTCAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCACTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCTT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- GW21 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGCCCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTCAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCACTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCTT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JB07 ---AATTCAGAGAAACCCTGG------AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCCT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGCCCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTCAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCACTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCTT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JB9908 ---AATTCAGAGAAACCCTGG--A-AAAAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAAAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGATGCCCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTCAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AT--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAATGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCACTCGGTTCTTT-------------------------------------------------------------------------------------------------------------------------------------------ATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA--AGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- NCsn1 ---AATTCAGAGAAACCCTGG--A-AAAAA-AAAA-AA---TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AT--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTCTAGTTAAGAGGAAAATCCGTCGACTTTCGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGATTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--T------------------------------------------------AA-TTGACAT-AGACCCAAACCT-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- TN159 ---AATTCAGAGAAACCCTGG--A-AAAAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AT--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAGTTAAGAGGAAAATCCGTCGACTTTCGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGATTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--T------------------------------------------------AA-TTGACAT-AGACCCAAACCT-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- ATBP610 ---AATTCAGAGAAACCCTGG--A---AAA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGCCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C---T-T--------TT---T--TT-----------------------------------------------AA-TTGACA-TAGACCCAAACCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- RO42 ---AATTCAGAGAAACCCTGG--A---A-A-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCATT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTAATATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACAACCCGAATCGATATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAA-----GAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGCCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCCAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA-TAGACCCA----------------------------------------TAAAATAAAATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- TA3620 ---AATTCAGAGAAACCCTGG--A---A-A-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-TGTTGCA-----TT------AGTAAAGTAAAGGAACCATT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTAATATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACAACCCGAATCGATATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAA-----GAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATCGGTTGATAGATA-------AC--------------TCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAAGAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGCCCCTCTATCCCCAAAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCCAAATTCGTTATCTTTCTCATTCATTTTCATTCGGTTCTTTCACAAACCTGAA-TT-T---T-T--T-T----CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA-TAGACCCA----------------------------------------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JPS5679 ---AATTCAGAGAAACCCTGG--A---ATA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTATTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA----------CAATACATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GCAAAATG-----A----------------AATAAA----------------CTCAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATAGGTTGATAGATA-------AC-------TGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAACAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-AGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCAT------TCGGTTCTTTCACAAACCTGAA--T-C-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAAGAATCCCCA-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JPS9541 ---AATTCAGAGAAACCCTGG--A---ATA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTATTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TTAGTAATAGTAAAGTAAAGAAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATAGGTTGATAGATA-------AC-------GGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAACAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAA-AGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCAT------TCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A---CAAGGAATCCCCG-TTGGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------T-----------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACAACGCAT-C---------GGAAATGGT-----CG- JPS9529 ---AATTCAGAGAAACCCTGG--A---ATA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATAGGTTGATAGATA-------AC-------TGATTAATCGGGCGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAACAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCC-AAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCAT------TCGGTTCTTTCACAAACCTGAA-TT-T-T-T-T--T-T-T--CTTTTCCCAAGTCTTGTGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A----AAGGAATCCCCA-TTAGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TTT-T--------TT---T--TT-----------------------------------------------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- JPS9543 ---AATTCAGAGAAACCCTGG--A---ATA-AAAA-A----TGGGCAATCCTG-A---G--CCAAATCCGGTTTTT-CGAAAACAA-----------AATAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAAATTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCTAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----A----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATAGGTTGATAGATA-------AC-------TGATTAATCGGGCGAGAATAAAGATAGAGTCCCATGCTAC------ATGTTAATATCAACAACAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCC-AAAAAAGGCCGTTC-GACTCCCTAGTTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCAT------T-GGTTCTTTCACAAACCTGAA-TT-T-T-T------T-T--CTTTTCCCAAGTCTTGTGATAGATATGATA--CATGCAAATGA-ACATCTTTGAGT-AAA-AC---AAGGAATCCCCA-TTAGAAATTGGAATGATTAACAATCCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA-------C----------T-TTTTCGT-C-TCT-T--------TT---T--TT-----------------------------------------------AA-TTGACA-TAGACCCAAGCCA-TT---------T----------AG----------TAAA-----ATGAGAAAG----------ACGACGCAT-C---------GGAAATGGT-----CG- PM9505 ----------------------------------------------------------G--CCAAATCCGGTTTTT-CGAAAACAA-----------AACAAAGTTCATAAAGACAGAAT-AAA-----AAAGGATAGGTGCAG-AGACT-CAATGGAAGCTGTTCTAATAAATGGAGTTGA----C-TG-CGTTGCA-----TT------AGTAAAGTAAAGGAACCCTT----------CGTT-AAAACTTCAGAAAAGC-------TAA----------------------AGTA----AAG------GAT----------------AACCCTA-TATA---------------CATA------C--------------------------------TGA-------------------AAGACTATCTCAAATGATTA-------------ATGACGACCCGAATCGGTATTCTTT-TTT---------AT-TTA---------TA------------T------------------GAAAAATG-----R----------------AATAAA----------------CTAAAAATATTGAA--TCGAT--TCCAAGTTGAAGAAAAAATCGA-------TTGATCAAATCATTCACTCCATAGGTTGATAGATA-------AC-------TGATTAATCGGGCGAGAATAAAGATAGAGTCCCATTCTAC------ATGTTAATATCGACAACAAGGAAATTTATAG-TAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCC-AAAAA-GGCCGTTC-GACTCCCTAATTATT-T-ATCTTATTCTCCCTTTTCGTTAACGGTTCAAAATTCGTTATCTTTCTCATTCAT------TCGGTT-YTTCACAAACCTGAA-TT-TCT-T-T--T-T-T--CTTTTCCCAAGTCTTGGGATAGATATGATACACATGCAAATGA-GCATCTTTGAGT-AAA-A----AAGGAATCCCCA-TTAGAAATTGGAATGATTAACAATTCAAATCATTAC-------TTGGACTGAAA----------CGTAC---------TTTA-ACGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; begin mrbayes; set nowarn = yes; lset nst = mixed rates = gamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 50000000 relburnin = no diagnfreq = 100000 printfreq = 10000 samplefreq = 10000 nchains = 4 temp = 0.05; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1356; END; BEGIN TREES; Title trnL-F_PRANK_BI; LINK Taxa = Taxa; TRANSLATE 1 HB94, 2 McPh10218, 3 MS2592, 4 RO18, 5 RV58, 6 RO32, 7 RO31, 8 CJ6729, 9 RV121, 10 BS2664, 11 RO29, 12 JW5388, 13 CJ6241, 14 GA2337, 15 BS2591, 16 RV60, 17 GA2167, 18 GA2123, 19 RV42, 20 GA2119, 21 GA2110, 22 GAsn1, 23 GA2180, 24 GR38, 25 GW4, 26 CJ3314, 27 CJ10522, 28 RV62, 29 RO13, 30 EK165, 31 QL12962, 32 RV54, 33 GA2112, 34 RV100, 35 RV122, 36 RV21, 37 RV94, 38 GA2107, 39 RV40, 40 FB13, 41 RV43, 42 CJ10470, 43 RO12, 44 CJ6717, 45 GA2178, 46 JV2549, 47 GW95, 48 RV23, 49 GA2208, 50 CJ7011, 51 FB15, 52 JW4474, 53 RV63, 54 RV83, 55 JW5155, 56 GA2109, 57 GA2116, 58 FB3, 59 RV50, 60 RV87, 61 RV39, 62 TA3364, 63 GA2174, 64 FJB16000, 65 GA2120, 66 RV15, 67 RV72, 68 RV32, 69 GA2111, 70 LC567, 71 GA2115, 72 GA2122, 73 GS7751, 74 GA2118, 75 JW4419, 76 JW4451, 77 FB9, 78 RV48, 79 HB3192, 80 MC2148, 81 FB11, 82 JW4640, 83 FB12, 84 GS327, 85 GS8294, 86 GA2113, 87 GA2108, 88 RV30, 89 RV134, 90 GW12, 91 CS217, 92 MC582, 93 JM38, 94 JW4382, 95 JW5172, 96 RV55, 97 DH2964, 98 CJsn1, 99 RV59, 100 RV75, 101 RV119, 102 RG5541, 103 LC578, 104 FB6, 105 MC2149, 106 AG66982, 107 JB10171, 108 QL12745, 109 RO41, 110 RV95, 111 GA2117, 112 TS2859, 113 QL13003, 114 JL3197, 115 GW113, 116 GA2104, 117 RV49, 118 GA2121, 119 RV80, 120 JB10128, 121 GW21, 122 JB07, 123 JB9908, 124 NCsn1, 125 TN159, 126 ATBP610, 127 RO42, 128 TA3620, 129 JPS5679, 130 JPS9541, 131 JPS9529, 132 JPS9543, 133 PM9505; TREE con_50_majrule = (1:0.421709,2:1.57276,(((((3:0.084413,(4:0.040783,5:0.040942,6:0.040927,7:0.04069,8:0.041673,9:0.088466)0.97:0.084066)0.57:0.069883,10:0.171359)0.75:0.094528,(((11:0.043047,12:0.041733,13:0.043914)1.00:0.132018,((14:0.042458,15:0.051244,16:0.04382)0.77:0.103809,17:0.053337,18:0.042961,19:0.043638,20:0.083169,21:0.085258,22:0.043258,23:0.042289)0.90:0.085211)0.99:0.0938,(24:0.044153,25:0.044475)0.99:0.090791,26:0.136464)0.93:0.087892,((27:0.045801,28:0.047121,29:0.046885,93:0.075575)0.91:0.095571,((30:0.04563,31:0.183791)0.95:0.086407,32:0.044636,33:0.079806,34:0.043754,35:0.090051,36:0.121483,37:0.043324)0.98:0.106558)0.94:0.159254,(38:0.180154,(39:0.060597,40:0.045728)1.00:0.181625)1.00:0.270728,(41:0.219665,((42:0.085726,43:0.043908,44:0.043298)0.94:0.084785,45:0.204861)1.00:0.169106)0.55:0.086873,((46:0.043828,47:0.043473)1.00:0.085634,48:0.042338,49:0.132439,50:0.092554)0.99:0.128205,((51:0.044026,52:0.04425,53:0.044969)1.00:0.147609,(64:0.388078,65:0.047182)0.92:0.100801)0.58:0.089515,((54:0.043662,55:0.043431,56:0.044497,57:0.042918,58:0.072006,59:0.042995,60:0.039656,61:0.107177,62:0.043366)0.60:0.085804,63:0.191005)1.00:0.342741,(66:0.082175,(67:0.070753,68:0.042303,69:0.047618,70:0.112829,71:0.040695,78:0.043257)0.85:0.076581,72:0.08295,73:0.040969,(74:0.042119,(75:0.040782,76:0.039009)0.99:0.083689)1.00:0.169077,77:0.115993,81:0.282011)0.59:0.129974,((82:0.040681,83:0.077859,84:0.046298,85:0.040995,86:0.041854)0.84:0.085783,(87:0.03424,88:0.03438,89:0.072743)1.00:0.310899)0.99:0.12621)0.55:0.165911,(((79:0.126908,105:0.256993)0.99:0.162141,106:0.343313)0.67:0.164503,80:0.256411)0.55:0.190958,(90:0.082259,91:0.042959,92:0.040843)1.00:0.260101,(94:0.070832,95:0.035616)1.00:0.131745,(((96:0.041589,(97:0.082067,98:0.067062)0.60:0.077393,99:0.135305)0.98:0.082982,100:0.030984,101:0.065137,102:0.041481)1.00:0.131411,103:0.132947,104:0.176532)0.81:0.08517,((107:0.380174,(114:0.130292,115:0.075971)0.95:0.146429,(((116:0.126746,117:0.052886)0.99:0.134602,118:0.08326,119:0.044106)1.00:0.183765,((120:0.087807,121:0.043887,122:0.043199)1.00:0.13201,123:0.186355)0.94:0.173773)0.55:0.082843,(124:0.097217,125:0.04848)1.00:0.250125,(126:0.045368,(127:0.043489,128:0.044127)1.00:0.222743)0.95:0.087161)0.99:0.132789,(108:0.368633,((109:0.036729,110:0.036868)0.99:0.079261,111:0.079307,112:0.078429,113:0.106045)1.00:0.203406)1.00:0.15558)0.88:0.086899)0.98:0.177143,(129:0.216415,130:0.202811)0.98:0.130227,(131:0.041635,132:0.387263,133:0.137354)1.00:0.129554)1.00:0.502646); TREE con_50_majrule = (1:0.421709,2:1.57276,(((((3:0.084413,(4:0.040783,5:0.040942,6:0.040927,7:0.04069,8:0.041673,9:0.088466):0.084066):0.069883,10:0.171359):0.094528,(((11:0.043047,12:0.041733,13:0.043914):0.132018,((14:0.042458,15:0.051244,16:0.04382):0.103809,17:0.053337,18:0.042961,19:0.043638,20:0.083169,21:0.085258,22:0.043258,23:0.042289):0.085211):0.0938,(24:0.044153,25:0.044475):0.090791,26:0.136464):0.087892,((27:0.045801,28:0.047121,29:0.046885,93:0.075575):0.095571,((30:0.04563,31:0.183791):0.086407,32:0.044636,33:0.079806,34:0.043754,35:0.090051,36:0.121483,37:0.043324):0.106558):0.159254,(38:0.180154,(39:0.060597,40:0.045728):0.181625):0.270728,(41:0.219665,((42:0.085726,43:0.043908,44:0.043298):0.084785,45:0.204861):0.169106):0.086873,((46:0.043828,47:0.043473):0.085634,48:0.042338,49:0.132439,50:0.092554):0.128205,((51:0.044026,52:0.04425,53:0.044969):0.147609,(64:0.388078,65:0.047182):0.100801):0.089515,((54:0.043662,55:0.043431,56:0.044497,57:0.042918,58:0.072006,59:0.042995,60:0.039656,61:0.107177,62:0.043366):0.085804,63:0.191005):0.342741,(66:0.082175,(67:0.070753,68:0.042303,69:0.047618,70:0.112829,71:0.040695,78:0.043257):0.076581,72:0.08295,73:0.040969,(74:0.042119,(75:0.040782,76:0.039009):0.083689):0.169077,77:0.115993,81:0.282011):0.129974,((82:0.040681,83:0.077859,84:0.046298,85:0.040995,86:0.041854):0.085783,(87:0.03424,88:0.03438,89:0.072743):0.310899):0.12621):0.165911,(((79:0.126908,105:0.256993):0.162141,106:0.343313):0.164503,80:0.256411):0.190958,(90:0.082259,91:0.042959,92:0.040843):0.260101,(94:0.070832,95:0.035616):0.131745,(((96:0.041589,(97:0.082067,98:0.067062):0.077393,99:0.135305):0.082982,100:0.030984,101:0.065137,102:0.041481):0.131411,103:0.132947,104:0.176532):0.08517,((107:0.380174,(114:0.130292,115:0.075971):0.146429,(((116:0.126746,117:0.052886):0.134602,118:0.08326,119:0.044106):0.183765,((120:0.087807,121:0.043887,122:0.043199):0.13201,123:0.186355):0.173773):0.082843,(124:0.097217,125:0.04848):0.250125,(126:0.045368,(127:0.043489,128:0.044127):0.222743):0.087161):0.132789,(108:0.368633,((109:0.036729,110:0.036868):0.079261,111:0.079307,112:0.078429,113:0.106045):0.203406):0.15558):0.086899):0.177143,(129:0.216415,130:0.202811):0.130227,(131:0.041635,132:0.387263,133:0.137354):0.129554):0.502646); END; BEGIN TREES; Title trnL-F_PRANK_ML; LINK Taxa = Taxa; TRANSLATE 1 HB94, 2 McPh10218, 3 MS2592, 4 RO18, 5 RV58, 6 RO32, 7 RO31, 8 CJ6729, 9 RV121, 10 BS2664, 11 RO29, 12 JW5388, 13 CJ6241, 14 GA2337, 15 BS2591, 16 RV60, 17 GA2167, 18 GA2123, 19 RV42, 20 GA2119, 21 GA2110, 22 GAsn1, 23 GA2180, 24 GR38, 25 GW4, 26 CJ3314, 27 CJ10522, 28 RV62, 29 RO13, 30 EK165, 31 QL12962, 32 RV54, 33 GA2112, 34 RV100, 35 RV122, 36 RV21, 37 RV94, 38 GA2107, 39 RV40, 40 FB13, 41 RV43, 42 CJ10470, 43 RO12, 44 CJ6717, 45 GA2178, 46 JV2549, 47 GW95, 48 RV23, 49 GA2208, 50 CJ7011, 51 FB15, 52 JW4474, 53 RV63, 54 RV83, 55 JW5155, 56 GA2109, 57 GA2116, 58 FB3, 59 RV50, 60 RV87, 61 RV39, 62 TA3364, 63 GA2174, 64 FJB16000, 65 GA2120, 66 RV15, 67 RV72, 68 RV32, 69 GA2111, 70 LC567, 71 GA2115, 72 GA2122, 73 GS7751, 74 GA2118, 75 JW4419, 76 JW4451, 77 FB9, 78 RV48, 79 HB3192, 80 MC2148, 81 FB11, 82 JW4640, 83 FB12, 84 GS327, 85 GS8294, 86 GA2113, 87 GA2108, 88 RV30, 89 RV134, 90 GW12, 91 CS217, 92 MC582, 93 JM38, 94 JW4382, 95 JW5172, 96 RV55, 97 DH2964, 98 CJsn1, 99 RV59, 100 RV75, 101 RV119, 102 RG5541, 103 LC578, 104 FB6, 105 MC2149, 106 AG66982, 107 JB10171, 108 QL12745, 109 RO41, 110 RV95, 111 GA2117, 112 TS2859, 113 QL13003, 114 JL3197, 115 GW113, 116 GA2104, 117 RV49, 118 GA2121, 119 RV80, 120 JB10128, 121 GW21, 122 JB07, 123 JB9908, 124 NCsn1, 125 TN159, 126 ATBP610, 127 RO42, 128 TA3620, 129 JPS5679, 130 JPS9541, 131 JPS9529, 132 JPS9543, 133 PM9505; TREE Imported_tree_0 = ((132:0.009916071284914464,133:0.002875710484323198)76:6.4477432076902E-7,(((((((103:0.0025145552544547415,104:0.0037824689987928485)34:6.4477432076902E-7,((96:6.4477432076902E-7,((98:6.4477432076902E-7,97:0.0011953488167523194)59:0.0011946225312831345,99:0.002709837972723063)29:6.4477432076902E-7)65:0.0011941849644446837,(102:6.4477432076902E-7,(100:6.4477432076902E-7,101:0.0012753015752110498)30:6.4477432076902E-7)29:6.4477432076902E-7)81:0.0024032346836730524)52:0.0012077572653775776,((90:0.0014077188874259323,(92:6.4477432076902E-7,91:6.4477432076902E-7)65:6.4477432076902E-7)100:0.005727117030188924,(80:0.009128510799655069,(106:0.008500247290391122,(79:0.003062748766438464,105:0.006373136144263242)72:0.0031117063769031893)53:6.4477432076902E-7)52:0.004044280710029772)32:0.0011849474090794812)9:6.4477432076902E-7,((95:6.4477432076902E-7,94:0.0012254525309432608)82:0.00241875303255932,((63:0.0036283094114238066,(((60:6.4477432076902E-7,(((59:6.4477432076902E-7,58:0.0012326991661377228)48:6.4477432076902E-7,55:6.4477432076902E-7)20:6.4477432076902E-7,62:6.4477432076902E-7)37:6.4477432076902E-7)39:6.4477432076902E-7,54:6.4477432076902E-7)37:6.4477432076902E-7,(56:6.4477432076902E-7,(57:6.4477432076902E-7,61:0.003708118959417151)16:6.4477432076902E-7)44:6.4477432076902E-7)53:0.0011783050075671905)98:0.008503184586203414,((((89:0.001282043358326888,(87:6.4477432076902E-7,88:6.4477432076902E-7)95:6.4477432076902E-7)100:0.007312177860724331,(82:6.4477432076902E-7,((85:6.4477432076902E-7,86:6.4477432076902E-7)52:6.4477432076902E-7,(83:0.0010754907171142952,84:6.4477432076902E-7)40:1.6453717817854055E-4)62:6.4477432076902E-7)62:0.0012088390836589216)59:0.0012290809032436839,(66:0.0012235677727270473,((((70:0.0024833474672654662,68:6.4477432076902E-7)13:6.4477432076902E-7,(78:6.4477432076902E-7,(69:6.4477432076902E-7,67:0.001136141844245468)30:1.0747680824288568E-4)32:6.4477432076902E-7)44:6.4477432076902E-7,71:6.4477432076902E-7)68:0.0011890823568883211,((77:0.0014882441059300411,81:0.007091287586286399)84:0.0014767255726042762,(73:6.4477432076902E-7,(72:0.0012424341121679294,(74:6.4477432076902E-7,(76:6.4477432076902E-7,75:6.4477432076902E-7)89:0.0012401279451863282)96:0.0037282204469130343)11:6.4477432076902E-7)11:6.4477432076902E-7)39:6.4477432076902E-7)14:6.4477432076902E-7)58:0.0024331409335373163)29:0.0012049585390302166,(((((48:6.4477432076902E-7,(46:6.4477432076902E-7,47:6.4477432076902E-7)61:0.0012067227986198262)32:6.4477432076902E-7,(49:0.0024989035138560044,50:0.0013029352554759374)83:6.4477432076902E-7)88:0.0024164637362046677,((51:6.4477432076902E-7,(52:6.4477432076902E-7,53:6.4477432076902E-7)57:6.4477432076902E-7)88:0.0025985062354629673,(65:6.4477432076902E-7,64:0.010159587773354283)74:0.0014526957092990589)56:0.001288860628657893)14:6.4477432076902E-7,(((93:6.4477432076902E-7,(28:6.4477432076902E-7,(27:6.4477432076902E-7,29:6.4477432076902E-7)30:6.4477432076902E-7)74:6.4477432076902E-7)57:0.0013745330619110224,((33:0.0012397959679267855,((37:6.4477432076902E-7,(36:0.0023960568411676994,35:0.00128145319173314)51:3.497281194905741E-5)45:0.0012028592638306968,32:6.4477432076902E-7)24:6.4477432076902E-7)46:6.4477432076902E-7,(34:6.4477432076902E-7,(31:0.003918973244783037,30:6.4477432076902E-7)66:0.0012067685380605603)25:6.4477432076902E-7)73:0.0016128329124205814)64:0.003224974977482501,(((39:6.4477432076902E-7,40:6.4477432076902E-7)99:0.0042436239621077,38:0.003796100393037426)98:0.007043153715303524,(10:0.003701650971843276,(3:0.0011922186203246062,((4:6.4477432076902E-7,5:6.4477432076902E-7)86:6.4477432076902E-7,(((9:0.001280310970836696,6:6.4477432076902E-7)56:6.4477432076902E-7,7:6.4477432076902E-7)87:6.4477432076902E-7,8:6.4477432076902E-7)50:6.4477432076902E-7)69:0.0011916876992932204)52:6.4477432076902E-7)51:0.0024069976981146695)5:6.4477432076902E-7)2:6.4477432076902E-7)0:6.4477432076902E-7,((41:0.004972564665181251,(((43:6.4477432076902E-7,44:6.4477432076902E-7)70:6.4477432076902E-7,42:0.0012115115791322875)77:0.001208007769630474,45:0.004546164767850338)88:0.0029051752926348563)38:0.0011993722151736413,((24:6.4477432076902E-7,25:6.4477432076902E-7)92:0.001255772055455925,(26:0.00258407102826082,(((19:6.4477432076902E-7,((17:6.4477432076902E-7,(15:6.4477432076902E-7,16:6.4477432076902E-7)51:6.4477432076902E-7)39:6.4477432076902E-7,14:6.4477432076902E-7)44:0.0024250766109232386)48:6.4477432076902E-7,(23:6.4477432076902E-7,(22:6.4477432076902E-7,(18:6.4477432076902E-7,(20:0.0012378521011721932,21:0.001239568393255521)25:6.4477432076902E-7)16:6.4477432076902E-7)37:6.4477432076902E-7)44:6.4477432076902E-7)80:0.0012016052091093363,(11:6.4477432076902E-7,(12:6.4477432076902E-7,13:6.4477432076902E-7)90:6.4477432076902E-7)89:0.0024195217783590686)70:0.0012554694635992277)32:6.4477432076902E-7)65:0.0012509943960136117)0:6.4477432076902E-7)1:6.4477432076902E-7)17:6.4477432076902E-7)52:0.0036222894093971003)8:6.4477432076902E-7)25:6.4477432076902E-7,((108:0.009249586991503607,((111:0.00126807046180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END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1356; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1356; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1389011217236; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1439882347621023035; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2456217257192473006; mqVersion 274; checksumv 0 2 2973412134 null getNumChars 1356 numChars 1356 getNumTaxa 133 numTaxa 133 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 2385880.0 sumSquares -2.7670116110564033E19 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 230; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;