NEXUS
[File created by TreeBASE:  7/26/07  21:11:48]
[Matrix accession#: M2638]

BEGIN TAXA;
	TITLE M2638;
	DIMENSIONS  NTAX=18;
	TAXLABELS
		Trichonympha_agilis_1	Trichonympha_agilis_2	Pseudotrichonympha_grassii_03A54	Holomastigotoides_mirabile_03B79	Spirotrichonympha_leidyi_02A66	Devescovina_sp._D01	Devescovina_sp._D10	Stephanonympha_sp._St10	Stephanonympha_sp._St48	Trichomitus_batrachorum	Tritrichomonas_foetus_1	Tritrichomonas_foetus_2	Monocercomonas_sp._1	Monocercomonas_sp._2	Hypotrichomonas_acosta	Tetratrichomonas_gallinarum	Trichomonas_vaginalis_1	Trichomonas_vaginalis_2
	;
END;

BEGIN CHARACTERS;
	TITLE M2638;
	DIMENSIONS NCHAR=378;
	FORMAT datatype = protein gap = - ;
	MATRIX
		Trichonympha_agilis_1                  HGIQPDGQMPSDKTIGVEDDAFNTFFQETGAGKHVPRAVFVDLEPTVVDEVRTGTYRRLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPA?QISTAVVEPYNSILACHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTELQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCLLYRGDVVPKDVGSAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMFSKRAFV
		Trichonympha_agilis_2                  HGIQPDGQMPSDKTIGVEDDAFNTFFQETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQISTAVVEPYNSILACHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCLLYRGDVVPKDVGSAVATIKTKRTIQFVDWCLTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMFAKRAFV
		Pseudotrichonympha_grassii_03A54       HGIQPDGQMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGLQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSVAVVEPYNSVLATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACCCLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Holomastigotoides_mirabile_03B79       HGIQPDGQMPSDKTIGVADDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRVRKLADQCTGMQGFLLFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNWVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Spirotrichonympha_leidyi_02A66         HGIQPDGQMPSDKTIGVSDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLMFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDICRRALDIERPTYTNLNRLIGQCVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Devescovina_sp._D01                    HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVVEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGGAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Devescovina_sp._D10                    HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQITNGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATRAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGGAVATIKTRRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYTKRAFV
		Stephanonympha_sp._St10                HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDFGRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Stephanonympha_sp._St48                HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEEAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Trichomitus_batrachorum                HGIQPDGQMPSDKTIGICDDAFNTFFSETGAGKHVPRAVMVDLEPTVVDEVRTGTYRQLWHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLTVAEVTNTLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAIATIKTKRAIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAVAEAWSRLDHKFDLMYAKRAFV
		Tritrichomonas_foetus_1                HGIQPDGQMPSDKTIGVCDDAFNTFFSETGSGKHVPRAVFIDLEPTCMDEVRTGTYRQLYHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLSDQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYSPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTCLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIVEAWSRLDHKFDLMYAKRAFV
		Tritrichomonas_foetus_2                HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFIDLEPTCMDEVRTGTYRQLYHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGMQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNTLFEPANMMVKCDPRHGKYMACTCLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Monocercomonas_sp._1                   HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHIPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGLGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Monocercomonas_sp._2                   HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQIINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVGAAVATIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Hypotrichomonas_acosta                 HGIQPDGQMPSDKTIGVCDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLINGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPAPQVSTAVVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYSRIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTSFKMGINYQPPTVVPGGDLAMVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Tetratrichomonas_gallinarum            HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKELIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHAMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Trichomonas_vaginalis_1                HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIVEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
		Trichomonas_vaginalis_2                HGIQPDGQLPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEIIDLTLDRIRKLADQCTGLQGFLIFHSFGGGTGAGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAIIEPYNSILATHSMIDHSDCAFMVDNEALYDLCRRALDIERPTYTNLNRLIGQVVSSLTASLRFDGALNVDFTEFQTNLVPYARIHFPICSYAPVISAEKAYHEQLSVAEITNSLFEPANMMVKCDPRHGKYMACTLLYRGDVVPKDVSAAVATIKTKRTIQFVDWCPTGFKMGINYQPPTVVPGGDLAKVQRAVCMLANTTAIAEAWSRLDHKFDLMYAKRAFV
	;
END;