#NEXUS [written Tue Feb 25 12:39:46 CET 2014 by Mesquite version 2.75 (build 564) at obornik-HPPC/10.0.0.228] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Psilocybe_medullosa_P11 Psilocybe_pelliculosa_P19 Psilocybe_silvatica_P24 Leratiomyces_laetissimus_P27 Psilocybe_cubensis_P30 Psilocybe_semilanceata_P31 Psilocybe_atrobrunnea_P32 Hypholoma_marginatum_P33 Psilocybe_weraroa_P34 Psilocybe_atrobrunnea_P36 Psilocybe_medullosa_P37 Leratiomyces_squamosus_P38 Psilocybe_cyanescens_GU565158 Psilocybe_serbica_GU565165 Psilocybe_azurescens_GU565159 Psilocybe_allenii_HE994457 Psilocybe_atrobrunnea_P54 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=477; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Psilocybe_medullosa_P11 GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAATTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_pelliculosa_P19 GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACTCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_silvatica_P24 GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAATTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Leratiomyces_laetissimus_P27 GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_cubensis_P30 GCTGATTGTGCTATCCTCATCATCGCTGGTGGAACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCCCTTCTCGCCTTCA Psilocybe_semilanceata_P31 GCCGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCAAAGGATGGCCAGACTCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_atrobrunnea_P32 GCCGATTGTGCCATTCTCATCATTGCCGGTGGAACTGGTGAGTTCGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTTGCCTTCA Hypholoma_marginatum_P33 GCTGATTGCGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_weraroa_P34 GCTGATTGTGCTATCCTTATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_atrobrunnea_P36 GCCGATTGTGCCATTCTCATCATTGCCGGTGGAACTGGTGAGTTCGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTTGCCTTCA Psilocybe_medullosa_P37 GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAATTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Leratiomyces_squamosus_P38 GCTGATTGTGCCATTCTCATCATCGCTGGTGGAACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_cyanescens_GU565158 GCTGATTGTGCTATCCTYATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_serbica_GU565165 GCTGATTGTGCTATCCTCATCATCGCCGGAGGAACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGTCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_azurescens_GU565159 GCTGATTGTGCTATCCTYATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCA Psilocybe_allenii_HE994457 GCTGATTGTGCTATCCTCATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTATYTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCYTTCA Psilocybe_atrobrunnea_P54 GCCGATTGTGCCATTCTCATCATTGCCGGTGGAACTGGTGAGTTCGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTTGCCTTCA Psilocybe_medullosa_P11 CCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAATTTTCTCTATACTTTGAAATTTTATTCTCACCTTTTAGTGGTC Psilocybe_pelliculosa_P19 CCCTCGGTGTCCGCCAACTTATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAAGCTTTTCTTGACTCAAAAAGTTGAATTTCATCATTAAGTGGTC Psilocybe_silvatica_P24 CCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAAATTTCTCTATACTTTGAAATTTTATTCTCACCTTTTAGTGGTC Leratiomyces_laetissimus_P27 CCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGATACCACCAAGGCATGTGATTTCATTCTGTTAAAATTTGTTAACATTTTCAAGTGGTC Psilocybe_cubensis_P30 CCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGACACCACCAAGGTAAATTTTCCCCAAACTTATCCTTTAATTCTTATTTCGCAGTGGTC Psilocybe_semilanceata_P31 CCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAAGCTTTCCCCGTGATTTAAATGTCAATTTCAAAACGGAGTGGTC Psilocybe_atrobrunnea_P32 CCCTTGGTGTCCGACAACTTATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAATTTTTTTTCGATCCCTGATTTTTAATCTCATTTTTTAGTGGTC Hypholoma_marginatum_P33 CCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGATACCACCAAGGTAATTTACTCATCTCACGTAAAACATGTTAACTTTTTCAAGTGGTC Psilocybe_weraroa_P34 CCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTTYTTAGTGGTC Psilocybe_atrobrunnea_P36 CCCTTGGTGTCCGACAACTTATTGTCGCCGTCAACAAGATGGACACCACCAAAGTAATTTTTTTTCGATCGCTGATTTTTAATCTCATTTTTTAGTGGTC Psilocybe_medullosa_P37 CCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAATTTTCTCTATACTTTGAAATTTTATTCTCACCTTTTAGTGGTC Leratiomyces_squamosus_P38 CCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGATACCACCAAGGCATGTATTTCCATTTTGATAAAATTTGTTAACCTTTTCAAGTGGTC Psilocybe_cyanescens_GU565158 CCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTTCTTAGTGGTC Psilocybe_serbica_GU565165 CCCTCGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTCTTCAAACCTTAAATTTTGATCTAATTTCTCAGTGGTC Psilocybe_azurescens_GU565159 CCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTTCTTAGTGGTC Psilocybe_allenii_HE994457 CCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTTCTTAGTGGTC Psilocybe_atrobrunnea_P54 CCCTTGGTGTCCGACAACTTATTGTCGCCGTCAACAAGATGGACACCACCAATTTCGATCCCTTTTTTTTTCAAATCTTCAATTTATTTTTTTAGTGGTC Psilocybe_medullosa_P11 CGAAGACCGTTTCAATGAAATCGTCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTCGCCTTCGTCCCCATTTCCGGATGG Psilocybe_pelliculosa_P19 CGAAGACCGTTTCAACGAAATTGTCAAGGAGACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTTCCCATTTCCGGATGG Psilocybe_silvatica_P24 AGAAGACCGTTTCAATGAAATCGTCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTCGCCTTCGTCCCCATTTCCGGATGG Leratiomyces_laetissimus_P27 TGAGGATCGTTTCAACGAAATCATCAAGGAGACTTCAGGTTTCATCAAGAAGGTCGGATACAACCCCAAGACCGTCGCCTTCGTTCCCATCTCCGGATGG Psilocybe_cubensis_P30 CGAGGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTTGCCTTCGTCCCCATCTCTGGATGG Psilocybe_semilanceata_P31 CGAAGATCGTTTCAACGAAATTATCAAGGAGACTTCCAACTTCATCAAGAAGGTCGGCTACAACCCCAAGACCGTCGCCTTCGTCCCCATTTCCGGATGG Psilocybe_atrobrunnea_P32 CGAGGATCGTTTCAATGAAATTGTCAAGGAAACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTCCCCATTTCCGGATGG Hypholoma_marginatum_P33 CGAGGATCGTTTCAACGAAATCATCAAGGAGACTTCCGGCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTCGTCCCCATCTCTGGATGG Psilocybe_weraroa_P34 CGAAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACAGTTGCCTTTGTTCCCATTTCCGGATGG Psilocybe_atrobrunnea_P36 CGAGGATCGTTTCAATGAAATTGTCAAGGAAACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCTTTCGTCCCCATTTCCGGATGG Psilocybe_medullosa_P37 CGAAGACCGTTTCAATGAAATCGTCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTCGCCTTCGTCCCCATTTCCGGATGG Leratiomyces_squamosus_P38 CGAGGATCGTTTCAACGAAATCATCAAGGAAACTTCCGGTTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTCCCCATCTCCGGATGG Psilocybe_cyanescens_GU565158 CGAAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTTCCCATTTCCGGATGG Psilocybe_serbica_GU565165 CGAGGATCGTTTCAACGAAATTATCAAGGAGACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAAACCGTTGCCTTCGTCCCCATCTCCGGATGG Psilocybe_azurescens_GU565159 CGAAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTTCCCATTTCCGGATGG Psilocybe_allenii_HE994457 -SAAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTTCCCATTTCCGGATGG Psilocybe_atrobrunnea_P54 CGAGGATCGTTTCAATGAAATTGTCAAGGAAACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTCCCCATTTCCGGATGG Psilocybe_medullosa_P11 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTRAGTCACCATCGTTTTTACTCTAATTTTCTCCTTCTTTCAGCATGCCCTGGTTCAAGGGCTGGACT Psilocybe_pelliculosa_P19 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTAAGCTGCGAAAAAATTTCTCATGCCTAACTTTTTTTTCCAGCATGCCCTGGTTCAAGGGTTGGTCT Psilocybe_silvatica_P24 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTGAGTCACCATCGTTTTTACTCTAATTTTCTCCTTCTTTCAGCATGCCCTGGTTCAAGGGTTGGACT Leratiomyces_laetissimus_P27 CACGGAGACAACATGTTGGAGGARTCCACYAAGTAAGTCACTGTCCTTAATTGCATGTYTGATTATCGTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCT Psilocybe_cubensis_P30 CACGGAGACAACATGTTGGAGGAGTCCACCAAGTACGAGACTGTCTTGTTTTTTCTCTT-CCCTTCTTTTTTTAGCATGCCCTGGTACAAGGGTTGGTCT Psilocybe_semilanceata_P31 CACGGAGACAACATGTTGGAGGAGTCCACCAAGTAAGCAGCTATTTTTTTTGTCGCATCTAAATTTTCTTATCAGCATGCCCTGGTTCAAGGGTTGGACT Psilocybe_atrobrunnea_P32 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTGRGTAACCGTCATGTTTGTTCTGCTTTCCTTCTCTTCTTAGCATGCCCTGGTTCAAGGGCTGGACT Hypholoma_marginatum_P33 CATGGAGACAACATGTTGGAGGAGTCCCCCAAGTACGTTATCATCGTTGATCTCGTGTCTCACCTTCATTTTTAGCATGCCCTGGTACAAGGGTTGGTCG Psilocybe_weraroa_P34 CACGGAGACAACATGTTGGAGGAGTCCACCAAGTATGGATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCT Psilocybe_atrobrunnea_P36 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTGAGTAACCGTCATGTTTGTTCTGCTTTCCTTCTCTTCTTAGCATGCCCTGGTTCAAGGGCTGGACT Psilocybe_medullosa_P37 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTRAGTCACCATCGTTTTTACTCTAATTTTCTCCTTCTTTCAGCATGCCCTGGTTCAAGGGCTGGACT Leratiomyces_squamosus_P38 CACGGAGACAACATGTTGGAGGAGTCTCCCAAGTAAGTTTCCATCTAACAGTGCGTATCTGATTATCGCTTCTAGCATGCCCTGGTTCAAGGGTTGGTCG Psilocybe_cyanescens_GU565158 CACGGAGACAACATGTTGGAGGAGTCCACCAAGTATGRATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCT Psilocybe_serbica_GU565165 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTACGTATTTATTTCTCATTTTCTCTTGTCTTTCCTTCTTTAGCATGCCCTGGTTCAAGGGTTGGTCT Psilocybe_azurescens_GU565159 CACGGAGACAACATGTTGGAGGAGTCCACCAAGTATGRATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCT Psilocybe_allenii_HE994457 CACGGAGACAACATGTTGGAGGAGTCCACCAAGTATGRATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCT Psilocybe_atrobrunnea_P54 CACGGAGACAACATGTTGGAGGAGTCCGTCAAGTGAGTAACCGTCATGTTTGTCTTGCTTTCCTTCTCTTCTTAGCATGCCCTGGTTCAAGGGCTGGACT Psilocybe_medullosa_P11 CGTGAGACCAAGGCTGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGCCC Psilocybe_pelliculosa_P19 CGTGAGACCAAGGCTGGTGTTGTCAAGGGCAAGACCCTCCTCGATGCCATTGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_silvatica_P24 CGTGAGACCAAGGCTGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGCCC Leratiomyces_laetissimus_P27 CGTGAGACCAAGGCCGGTGTTGTCAAGGGTAAGACCCTCCTCGACGCCATCGACGCCATCGAACCCCCCGTCCGTCC Psilocybe_cubensis_P30 CGTGAGACCAAGGCTGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_semilanceata_P31 CGTGAGACCAAGGCCGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_atrobrunnea_P32 CGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCTATCGATGCCATCGAACCCCCCGTCCGTCC Hypholoma_marginatum_P33 CGAGAGACCAAGTCTGGCCTCGTCAAGGGCAAGACTCTCCTCGATGCCATTGATGCCATTGAGCCCCCCGTCCGTCC Psilocybe_weraroa_P34 CGTGAGACCAAGGCCGGTGTCGTTAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_atrobrunnea_P36 CGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCTATCGATGCTATCGAGCCCCCCGTCCGTCC Psilocybe_medullosa_P37 CGTGAGACCAAGGCTGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGCCC Leratiomyces_squamosus_P38 CGTGAGACCAAGGCCGGTGTTGTCAAGGGAAAGACCCTCCTCGACGCCATCGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_cyanescens_GU565158 CGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCYGTCCGTCC Psilocybe_serbica_GU565165 CGTGAGACCAAGGCCGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_azurescens_GU565159 CGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_allenii_HE994457 CGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC Psilocybe_atrobrunnea_P54 CGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCTATCGATGCTATCGAACCCCCCGTCCGTCC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 477; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 477; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 477; END; BEGIN TREES; Title 'Trees from "EF1aML.nex"'; LINK Taxa = Taxa; TRANSLATE 1 Psilocybe_medullosa_P11, 2 Psilocybe_pelliculosa_P19, 3 Psilocybe_silvatica_P24, 4 Leratiomyces_laetissimus_P27, 5 Psilocybe_cubensis_P30, 6 Psilocybe_semilanceata_P31, 7 Psilocybe_atrobrunnea_P32, 8 Hypholoma_marginatum_P33, 9 Psilocybe_weraroa_P34, 10 Psilocybe_atrobrunnea_P36, 11 Psilocybe_medullosa_P37, 12 Leratiomyces_squamosus_P38, 13 Psilocybe_cyanescens_GU565158, 14 Psilocybe_serbica_GU565165, 15 Psilocybe_azurescens_GU565159, 16 Psilocybe_allenii_HE994457, 17 Psilocybe_atrobrunnea_P54; TREE PHYLIP_1 = (8:0.212645,((((14:0.074399,(5:0.132924,(16:0.0,(15:0.0,(13:0.0,9:0.012584)479:0.0)516:0.0)1000:0.115665)490:0.024252)922:0.108161,((7:0.0,(10:0.014191,17:0.102189)565:0.008409)998:0.125696,(3:0.008339,(11:0.0,1:0.0)859:0.004171)991:0.134259)779:0.042942)569:0.065921,(6:0.157878,2:0.140896)710:0.035853)1000:0.166904,(4:0.079226,12:0.106208)820:0.078012):0.0); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1393328386924; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8845844709154868563; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8716478933782419073; mqVersion 275; checksumv 0 3 360579045 null getNumChars 477 numChars 477 getNumTaxa 17 numTaxa 17 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 176856.0 sumSquares -5.072854620270126E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8845844709154868563 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 876.1393328328028.5831592878004697098; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat off; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8716478933782419073 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 184; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;