#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=27; TAXLABELS Amycolatopsis_mediterranei Amycolatopsis_orientalis Streptomyces_coelicolor Streptomyces_lividans Streptomyces_ghanaensis Streptomyces_griseoflavus Streptomyces_griseus Thermomonospora_curvata Rhodococcus_opacus Nocardioides Mycobacterium_tuberculosis Mycobacterium_bovis Mycobacterium_leprae Mycobacterium_smegmatis Corynebacterium_glutamicum Corynebacterium_diphtheriae Nocardia_farcinica Rhodococcus_erythropolis Saccharopolyspora_erythraea Saccharomonospora_viridis Frankia_sp. Actinosynnema_mirum Arthrobacter_aurescens Arthrobacter_chlorophenolicus Rothia_mucilaginosa Cellulomonas_flavigena Cellulomonas_fimi ; END; BEGIN CHARACTERS; TITLE MurE; DIMENSIONS NCHAR=665; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Amycolatopsis_mediterranei ------------------------------------------------MKAVPAPPRPARIDPVPLATLLARADARLIAGS--------------------PDAAELTVTGTTLRAQHVL-PGDLFAALPGARAHGADFSDQAVAAGAVAVLTDAAGAERPALRD------AGVPILVHPDPRAALGEIAAWIYGE---PSLELSVLGVTGTSGKTTTSYLVDAGLQAAGLT--------TGLIGTVETRIAGDRLVSGFTTPEAPDLQALLAVMLERGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDG------RSTHEVVVVDSAWGQALLTPQT-----ITVTTDPGT-------------EAAWKATDLEATPQGEQ-TFTLHGPDGARAAARIPLPGEFNVANAVLAAAILSTA--GVSLEHIVAGLAQVQ-----VPGRMERVHVGQE--FTAVVDYAHKPAAVAQGLDALRART-------EGRIITVLGCGGDRDTAKRPIMGEAAARRSDVLIVTDDNPRSEDPAAIRAAMLAGARSVGPAE--GGEILEIGDRREAIAHAVSLAGPGDIVFLAGKGHESGQEAGGVVHPFSDRDELAAAIRNKLEVSV---------------------- Amycolatopsis_orientalis ---------------------------------------------------------------MPLGTLLARAGARLVVGGD-----------------DYPAAAELTVTGSTLRAQHVL-PGDLFAALPGARAHGADFSDQAIAAGAAAVLTDEAGAERPVLRD------AGVPILVHPDPRAALGEIAAWIYGE---PSLELSVLGITGTSGKTTTSYLVDAGLKAAGLT--------TGLIGTVETRIAGERLASGFTTPEAPDLQALLAVMVERGVTHVPMEVSSHALSLGRVNGTRFAVGAFTNLSQDHLDFHKDMEEYFAAKSLLFDG------RSTAEVVVVDSAWGQALLTPHT-----VTVSTEPGT-------------DALWRATDLNPTPAGEQ-TFTLHGPEGLTAAAKIPLPGEFNVANAVLAAAILDTA--GVPLDAIVAGLAAVE-----VPGRMERVYLGQP--FTAVVDYAHKPAAVAQGLDALRART-------EGRIITVLGCGGDRDTAKRPVMGEAAVRRSEVLIVTDDNPRSEDPAAIRAAMLAGARNAGPAL--GGEILEIADRREAIVHAVELAQPGDIVLIAGKGHETGQEVQGVVHPFSDREELAAAIRRRLETV----------------------- Streptomyces_coelicolor -------------------------------------------------MTYPGPPRPVRISATPLAELADQLGVAAPDG-------------------------SAEITGITHDSRAVR-PGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPAGAERAAAAG--------LPALVVDDPRARMGELAATIYGH---PGRDLLQIGITGTSGKTTTAYLVEGGLRTAKST---------GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPK-----RSRLGVVNVDDEYGRRLAKEATVP--VVTYS---AEG----------HPDADWRADEVEVGPLDS--TFTVLGPKGERIAAKSPLAGPFNVANTLAAIVALAAA--GLDPQSAADGVAAVPG----VPGRLERVDEGQP--FFAVVDYAHKTDAVESVLRALRKVT-------EGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSEDPLAILATMLQGAASVPAHE--RGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIAGVVRPFDDRQVLREAIKKTQG------------------------- Streptomyces_lividans ----------------------------------------------------------MRISATPLAELADQLGVAAPDG-------------------------SAEITGITHDSRAVR-PGDLYAALPGARLHGADFVTQAAGLGAAAVLTDPAGAERAAAAG--------LPALVVDDPRARMGELAATIYGH---PGRDLLQIGITGTSGKTTTAYLVEGGLRTAKST---------GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPK-----RSRLGVVNVDDEYGRRLAKEATVP--VVTYS---AEG----------HPDADWRADEVEVGPLDS--TFTVLGPKGERIAAKSPLAGPFNVANTLAAIVALAAA--GLDPQSAADGVAAVPG----VPGRLERVDEGQP--FFAVVDYAHKTDAVESVLRALRKVT-------EGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSEDPLAILATMLQGAASVPAHE--RGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIAGVVRPFDDRQVLREAIKKTQG------------------------- Streptomyces_ghanaensis -------------------------------------------------MTYPGPPRPAQVSATPLAELADQLGLPAPER-------------------------NAEVTGITHDSRAVR-PGDLYAALPGARAHGADFVAQAAGLGAVAVLTDPSGAERVAATG--------LPALVVDDPRARMGELAVTIYGH---PGRDLLQIGITGTSGKTTTAYLVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRERGTDAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLFTPE-----RSRLGVVNVDDEYGRRLAKEAGVP--VVTYS---AEG----------HPDADWRTEDVRVGPLDS--SFTVIGPEDQRVAARSPLPGPFNVANTLAAIVALAAA--GLDPQAAADGVAAVPG----VPGRLERVDAGQP--YLAVVDYAHKTDAVESVLRTLRRVT-------EGRVHVVLGCGGDRDITKRAPMGAAAARLADTAVLTSDNPRSEDPLAILATMLQGAASVPAHE--RGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHEQGQDIAGVVRPFDDRQVLREAIKKTQG------------------------- Streptomyces_griseoflavus -------------------------------------------------MTYPGPPRPVQVSATPLAELSGQLGVAAPEQ-------------------------TAEVTGITHDSRAVR-PGDLYAALPGARAHGADFVTQAAGLGAVAVLTDPAGAERVAAAG--------LPALVVDDPRARMGELAATIYGH---PGRDLLQIGITGTSGKTTTAYLVEGGLRTVHST---------GLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDAVAMEVSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFRAKAQLFTPE-----RGRLGVVNADDEYGRRLAKEAGVP--VVTYS---AEG----------HPDADWRAEDVEVGTMDS--TFTVVGPKGERIAARSPLPGPFNVANTLAAIVALAVA--GLDPQAAADGVAAVPG----VPGRLERVDAGQP--YLAVVDYAHKTDAVESVLRALRKVT-------EGRVHVVLGCGGDRDKTKRAPMGAAAARLADTAVLTSDNPRSEDPLSILATMLHGAATVPAHE--RGEVQVFE------------------------------------------------------------------------------- Streptomyces_griseus MTTITPDPGNRNENHRNQGPSLRETPHRPGTLTAVPHADQSQTSQKDAPVTYPGAPRPDRLRPTPLGELADRLGVEAAG--------------------------TGEVTGITHDSRAVR-PGDVYAALPGARFHGADFAAQAAGLGAAAVLTDPAGAERAAATG--------LPVLVTEDPRAVMGELAADIYGR---PGIGLLQLGITGTSGKTTTAYLVEGGLRAAGRP--------TGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPE-----RSHRGVVNFDDEYGRRLLTESGVP--VTSFS---AEG----------HPDADWHAEDVEVGPQDS--TFTAVGPKGERITARAPLPGPFNVANTLAAIVTLAVA--GVDPQIAADGIAAVPG----VPGRLERVDAGQP--YLAVVDYAHKTDAVESVLRSLRKVT-------EGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAAMLSGAAEVPVHE--RGDVLVDADRASAIAAAVARAEPGDTVLVAGKGHEQGQDIHGVVRAFDDRKVLHAAIERSLTRPGAADRAPHLENNSQG-------- Thermomonospora_curvata ------------------------------------------------------MMRPTTNPARPLLGLVELLSAQADGPG----------------------LAKVAVTGITHDSRQVL-PGDLYVALPGTRAHGAEFAAQAAAAGAVAIWTDPAGRHRAAATG--------LPVLVTDDVRARLGEAASWVYGD---PARDLSLIGVTGTSGKTTTVYLLEAGLRAAGVD--------TAVIGTVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAAAMEVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPA-----YSRVGVVNVDDGYGRELTRIAQVP--LTTFS---AAG----------DPSADWRAEDVRLGADGS--VFRLVGPGGIEADVSIQLPGPFNVANALAAIVALVEA--GLPLQVAAAGVGTLTG----VPGRLEPIDEGQD--FTALVDYSHKPGAVEAVLTSLREVT-------AGRLIVVLGCGGDRDRGKRPLMGETAARLADVAVLTDDNPRSEDPLAILAAMVEGVLKVPQAE--RAHLVVEPDRAAAIALALGRARRGDVVVIAGKGHEQGQYVAGRVLPFDDREVVRAELRRLVAQADGRDVAQR--------------- Rhodococcus_opacus --------------------------------------------MKVTD-----GLRPAQPVRTTVSALAALAGAR----VEA----------------PSGTAEHVIVTGVDLRAQGIV-EGDLFAALPGARAHGAEFAADALDRGATAILTDEAGLALVSALG------TDAPVLVHDDPRGVLGELSATIYGR---PSEKMQVIGITGTSGKTTTSYLVEGALNAAGRT--------TGLVGTIETRMSGRRVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFAAESSV--HAQHAVICVDDVWGRRMAEVARGAHS-IVTTVATTPE----------TGGAVWTAGPATVSASGSQ-KFALTTAEGTTLDVELRLPGQYNVANASLAVALCAVL--GVDPRDAVAGIAGVD-----VPGRVQRIDRGQD--FLAVVDYAHKPAAVEAVIATLRE-------QARGRVAVVVGAGGDRDAGKRPLMGAAAARGADLLIITDDNPRTEDPATIRAAIREGALGVPESE--RGQVWEVADRAKAIADAVGWAQAGDVVLVAGKGHEIGQEIHGVKYPFDDRAVLGDAIERQVGGTR---------------------- Nocardioides --------------------------------------------------MVSDSNRPAQPPRTPLATVAAWAGAELRGNP-----------------------AGLEVSGISLSSQRIR-PGDLYAALPGSRAHGIEFAQDALAAGAVAVFTDEAGADRGPAGA---------PHLVVDRPRAVLGRLSARIYGE---PAASMRMVGVTGTQGKTTTTRLLEAGLQQAGVP--------AAVVGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVSSHALVMGRVDGVVFDVAVFLNLGRDHLDFHRDLEDYYAAKASLFTPE-----RARFALVNVDDAHGRRLAEEATVP--VRTFSMGRGDD----------AQRADWRAVDVRLRATGS--EFVVVAPDGRRIPAGCALPGDFNVANTLAAVAAAAEA--GLDPAVVAAGIAAAGG----VPGRLERVDAGQD--FLVVVDYAHKPDAVEAAIRTLRPLT-------EGRVIVVLGAGGDRDPGKRPIMAGIAARLADLLVVTDDNPRTEDPAAIRAAMLAGVVT--------GQAIEVGGRRAAIREALRRAGPGDIVLIAGKGHETGQEVDGVVHPFDDREVVREEIVACSR------------------------- Mycobacterium_tuberculosis ------------------------------MSSLARGISRRRTEVATQVEAAPTGLRPNAVVGVRLAALADQVGAALAEGPA-----------------QRAVTEDRTVTGVTLRAQDVS-PGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAA-------VPVLVHPAPRGVLGGLAATVYGH---PSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV--------AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSAL--RARTAVVCIDDDAGRAMAARAADA---ITVSAAD--------------RPAHWRATDVAPTDAGGQ-QFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTV--GVSPEQAVPGLREIR-----VPGRLEQIDRGQG--FLALVDYAHKPEALRSVLTTLAHPD--------RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG----DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALERRA----------------------- Mycobacterium_bovis ------------------------------MSSLARGISRRRTEVATQVEAAPTGLRPNAVVGVRLAALADQVGAALAEGPA-----------------QRAVTEDRTVTGVTLRAQDVS-PGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAA-------VPVLVHPAPRGVLGGLAATVYGH---PSERLTVIGITGTSGKTTTTYLVEAGLRAAGRV--------AGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSAL--RARTAVVCIDDDAGRAMAARAADA---ITVSAAD--------------RPAHWRATDVAPTDAGGQ-QFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTV--GVSPEQAVPGLREIR-----VPGRLEQIDRGQG--FLALVDYAHKPEALRSVLTTLAHPD--------RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG----DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGGRVRPFDDRVELAAALEALERRA----------------------- Mycobacterium_leprae ---------------------------------------------MTEVVAVPVRLRPSATAGVRLPELVAQVGAVLADGPG-----------------QAATVPDIPVTGVTLRAQEVL-SGDLFAALAGASTHGARYAGVALERGAVAVLTDVAGVAELTAQASS------VPILIHPEPRSVLGGLAAAAYGH---PSNRMTVVGITGTSGKTTTTYMVEAGLRAGGRV--------VGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVERGVETVVMEVSSHALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSLL--RARTVVVCIDDDAGRATAARAGDA---ITVSALG--------------QPASWRATDIRSPGVGAQ-EFTAVDPAGVQHRVGIRLPGRYNVANCLVALAILDVV--GVSPEQASLGFRDIR-----IPGRLERIDCGQD--FLALVDYAHKPGALHSVLTALLQPD--------HRLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTDDNPRGEDPAAIRRDILTGTVAAGG----AAQVVEIGDRRAAIQYAVAWAGPDDVVLVAGKGHETGQRGAAETCPFDDRVELARALQVRDARLLPAPGRACQ-------------- Mycobacterium_smegmatis ---------------------------------------------------MAMKLRPSRPVGHHLAPLAAAVGAVASENPAG----------------SSSDLAAVHVTGVTLRGQDAQ-PGDLFAALPGASAHGARFAADAVAAGAVAVLTDPSGADLLAGTLD-------VPVLVHPAPRSVLGEAAAIVYGR---PAERLRVVGVTGTSGKTTTTYLAEAGLRAAGRV--------AGLIGTVGVRIDGTDLPSALTTPEAPALQALLALMVERGVDTVVMEVSSHALAQGRVDGIGFAVGGFTNLSRDHLDFHPTMADYFEAKARLFDPQSPN--HAAAAVICVDDQYGVQMAARAETP---LTVSTSG--------------AAADWRVEKITTAGPGAQ-EFVLVDPGGMHHQLGVGLPGRYNVANAALAVALLDAV--GVSPEQAAPGLRTAT-----VPGRLESIDLGQD--FLALVDYAHKPGALQAVLETLRAAEP-------RRIAVVFGAGGDRDPGKREPMGRVTAELADLVVVTDDNPRSEDPATIRSAILAGARAVAS----DAEIVEIGDRRAAIDHAVAWAQPGDIVLIAGKGHESGQTVGDHTRPFDDRDELAAALEASGKTRDRSS------------------- Corynebacterium_glutamicum -------------------------------------------------------MATTLLDLTKLIDGILKGSAQ-----GV----------------PAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAILTDAAGLEVLNEAG------ETRPVIVVDDVRAVLGAASSSIYGD---PSKDFTLIGVTGTSGKTTTSYLLEKGLMEAGHK--------VGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPL--VADKQVVCVDDSWGQRMAS-VAADV--QTVS----TL----------GQEADFSATDINVSDSGAQ-SFKINAPSNQSYQVELALPGAFNVANATLAFAAAARV--GVDGEAFARGMSKVA-----VPGRMERIDEGQD--FLAVVDYAHKPAAVAAVLDTLRT-------QIDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDDNPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHEVGQLVAGVTHHFDDREEVRAALTEKLNNKLPLTTEEG--------------- Corynebacterium_diphtheriae -------------------------------------------------------MPTQSPHSCTLERLTELAGGR-----LV----------------GETTAGATEISAIGLDSSQLP-ADAIFAALPGTKTHGAHYASQGKAAAALAVLSDHEGTQILVDSG------EKRPIIEVDDVRRVLGILSAEIYGH---PSHEMTIIGVTGTSGKTTTSYILERGLMAAGLH--------VGLIGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHVVMEVSSHALALGRVTGTRFSAAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPI--HAEKSVVCVNDLWGKNMAERAGADA--ITVCTEQEAA----------AHQADYWVSNIDVNPVGAQ-SFIVHHG-AQSTDVHLPLPGGFNIANTVVALALAESV--GVDTDAFIRGIADVA-----VPGRMERIDRGQE--FLAVVDYAHKPAAVAVVIDTVRD-------QVPGRIAVVVGAGGDRDSGKRPIMGAEAARRADLVIVTDDNPRSEDPAKIREAVLEGAHGVAG----SADIREIGDRREAIRIAVQWAQPGDAVIVAGKGHEVGQLINGVDHHFDDREEVAAALHDQG---FDLD------------------- Nocardia_farcinica ----------------------------------MSAEFAPPERSKVPQQSSQPVLRPVDPPSTPLTTVLELTGAH------A----------------AAPVPADVVVTGIEQRSGAVQ-PGDLFAALPGAHAHGARFAHDAVARGAVAVFTDAEGARVLDGLT--------VPVLVRERPREVLGELSAAVYGQ---PSQRLRLIGITGTSGKTTTSYLVEAGLAAAGLS--------TALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQAVVMEVSSHALALGRVDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPV--AARTAVVCVDDAWGRRLAEGLA-----APITVSTT-------------GEADWRVAGGVATVGAEQ-EFTAAGPAG-ELGVRLRLPGRYNVANALLAVAVCAAA--RADPAVAAPALATVD-----VPGRMQRVERGQD--FLAVVDYAHKPAALESVIATLREHLAAADPEHPGRLAVVVGAGGDRDAGKRALMGAAGARGADLLVITDDNPRTEDPATIRAALRAGALEVPAEV--RGEVREIGDRAAAIEAAVAWARRGDAVLVAGKGHETGQEIAGVKHPFDDREVLAAALAGKAGAEART-------------------- Rhodococcus_erythropolis ----------------------------------------MPNRLQSSNSDGAPGTRPTQPVATAITALSELSGARL-EWVGQ----------------PGSQSSEVVVKGVDLRAQGIV-ADDLFAALPGARTHGAQFAVDALGRGATAILTDEAGLELIEAAGKAP--DRSVPVLVHPNPRDVLGEISAEIYGR---PSEKMQVVGITGTSGKTTTSYLLEAAIAGAGRK--------PGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEVSSHALALGRVDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTV--RAEHAVVCVDDVWGRRMAELAATDESDAVTTVSTS------------TAEAEWKVGAVEVAEDGSQ-TFELVGPDGQSWPVSLRLPGRYNVANAALALTVSFAA--GLDPDAAVRALGTVD-----VPGRVQRIDRGQS--FLAVVDYAHKPAALEAVIATLRN-------QVPGRVAVVVGAGGDRDAGKRTLMGEAGARGADLLIVTDDNPRTEDPAKIRASVMQGAIDVPESE--RGEIREVGDRALAIEQAVRWAQPGDVVLVAGKGHEVGQEIDGVKHPFDDREVLGEMIGRFAINTAHGGKQ----------------- Saccharopolyspora_erythraea -------------------------------------MDTEQLAELIGARILRAPGQ---------------------GPS----------------------GRP--VTGATLRAQHVR-PGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHDDPRAALGPAAAKIYGE---PSKQLRILGVTGTSGKTTTTYLLESALAAAGFT--------TGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLFDG------RSEHEVVCTDTDWGRKLVKPGT-----ITVSTTG---------------DASWTATDVEAFPTGEQ-EFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAA--EVPTWAIERGLAEVD-----VPGRMERVALGQD--FTAVVDYSHKPGAVSAVLDAARAQA-------EGRVIVVLGCGGDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAE--RGEVIERGDRREAIAEAVARASSGDIVVVAGKGHETGQEVAGVVHPFSDREELAAALRRRLGAAHADGGDTEVHRGQGDEEAR---- Saccharomonospora_viridis --------------------------------------MRGRSRQDNQARVVVSPPRPHLIEPVPLTTLVARADARLVADP--------------------AVAESVRVTGATLRAQHVL-PGDLFAALPGARAHGADFTADAVAGGAVAVLTDEEGASRPAVRE------SGLPVLIHPDPRGVLGSVAAWIYGE---PSLTLSVLGITGTSGKTTTSYFVESGLRAAGYH--------TGLIGTVETRIGSERLASAFTTPEAPDLQALFADMVERGVTHVAMEVSSHALALGRVNGTRFTVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDG------RSTHEIVVVDSAWGQALVTPRT-----VTVSTEPDS-------------DAGWRATDITLTPGGEQ-SFTLHAPDGRKAQAVLPLPGEFNVANAVLAAAILDTV--GVDLDAVLEGLATVE-----VPGRMERVYLGQP--FTAVVDYAHKPAAVTQALRALRART-------EGRLITVIGSGGDRDTAKRPMMGEAAARGSDLVIVTDDNPRSEDPAAIREAILAGARAVGPAE--GCEVLEIGDRREAIAAAVERAEAGDVVFVAGKGHESGQEVAGVVHPFSDRDELEAAIRERFGVTE---------------------- Frankia_sp. ---------------------------------------MAVPAPTKVVTVTSPAPRPAAPPACSLADLRAVLAAVAPVPEPAAFAGAGHSPSDTHADTHADTDTDVIVHGVTHDSHAVR-PGDLHAALPGAHTHGAAFAAAAVAGGAVAVLTDAEGARRIAAMPPGP--PGEVPVLVSDDPRRDLAPVAARIYGD---PSAALRLLGVTGTNGKTTTAFLLDAGLRAAGHT--------TGLIGTIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHRADALHFAGAVFTNLSQDHLDFHSSMEDYFAAKASLFDPA-----RTAVAVIGVADRWGRRLAERHPG---AITFA---VEG------------PADWTARDVSYGPTGT--LLRAEGPDGLRVDLSVPLPGAFNVANTLGALALLVAI--GVPPATAAAGIGSLPG----VPGRMERVDAGQP--FLALVDFAHTPDAVTTLLETVRPLV-------KGRVIVVLGCGGDRDRGKRPLMGAAAATLADVAILTNDNPRSEDPAEILAQMLAGVTALSAS----ATVLVEPDRAAAIAAAVAEAGPQDAVVVAGKGHESGQEQAGVVTPFDDRVALRAALSSVERR------------------------ Actinosynnema_mirum -----------------------------MADHSPCAGSLPRVPAKLEGKVATAPPRPSRTQSVPASELAATVDARLTSPA----------------------GAPVLVTGVTLRAQHVL-PGDLFAALPGARAHGADFAAEAVRRGAVAVLTDEDGASRPELRD--------VPVLVHRDPRAALGALSARVYGE---PAQRVALWGVTGTSGKTTTSYMIESCLRAEGRV--------TGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEVSSHALRLGRVGGAGFAVGAFTNLSQDHLDFHPDMEDYFQAKAELFDG------RARREVVCVDGEWGRRLVKPGT-----VTVSATAPVG------------GATWTASGVRVSATGEQ-TFTAHGPDGLELAVALRLPGDFNVANALLAIGCLHAS--GVGAEAIVRGLAEVQ-----VPGRMQRVDVGQD--FTAVVDYSHKPAAVVLALDAVRARA-------TGRVITVLGCGGDRDTAKRPLMGAEAARRSEVLVVTDDNPRSEDPAAIRAAVLAGALEVPEAE--RGEVVEIGDRGAAIAHAVSLAVAGDVVVVAGKGHETGQEVAGVVHPFSDVDALTGAIQEALR------------------------- Arthrobacter_aurescens ------------------------------------MPDAGQTG-----------FRPASVAAVPLATIAD-----------------------ALGVAAPDASQDRGVTGITLNSRAVE-TGDLYMALPGASRHGADFVPQAVEAGAVAVVTDDAGARQLALAG-----EQPVPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLYGVTGTNGKTTTTYFINSLLR-ALEKK-------PGLIGTIEIVAGGEPIPSLLTTPESTDVHALLALMRERGLDAASMEVSSHAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFTAG-----RARHAVVTVDDDWGRQLAETA-----DIPVTTLSTKP------VDGSSSSTDWKVASITARGLGSE--FELKHADGRTLRVHTGLPGDFNVANAALATVMVLAS--GVDEHTLQAALDAHDPFTVSVPGRMQLISTEPA----SVVDFAHNPDALSRALEAVRSPR------EGSRVIVVFGATGQRDKGKRPTMGAIAARLADVVIISDDDPHDEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAVDMATGKDTILIAGRGHEVWQEVKGVNLALDDRVELRAALTSKGFSVSADQR--IES------------- Arthrobacter_chlorophenolicus ---------------------MSDFTPSHSSAVP--AAPASKAR-----------FRPAAVEPVRLASIGA-----------------------AVGVAVPGHAADVTVTGITLNSRSVE-AGDLYVALPGASRHGADFVAQAVGAGAVAVLTDDAGARLLALGN-----DTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDFTLFGVTGTNGKTTTTYFINSLLR-ALGTR-------SGLIGTIEILAGTEPIPSLLTTPESTEVHGLLALMRERGLGAAAMEVSSHAISYQRVDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELFTPA-----RARRAVVTVDDEWGRRLAGTA-----GIPVTTLST---------DG-QAAADWAVATTEPRGLGTA--FTLKGPDGAELRLHTGLPGSFNVANAALAAVMVLAG--GVDHAVLQEAVDTADPFTVAVPGRMQLVAEQPA----AVVDFAHNTDALARALEAVRPPA------PDSRLIVVFGATGQRDQGKRPAMGAVAARLADTVIITDDDPHDEDAAAIRADVLAGAEHARSSESLPCEILEVFPRDEAIRRAVELAGPSDSILVAGRGHEVWQEVKGVNLALDDRVELRSALTARGFNVLQDDR--IES------------- Rothia_mucilaginosa ----------MNDPVCLERIDHTELTASDSGEERRTMDTASHAPGQNLLGGDAQTLRPNSVRPVSLAHLREYLQGLGAQVSAQP----------ASGVQGSESGESVEVTGISMDSRGVR-PQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLLG--------EAPVPVLVTENLREYVGPLAALIYGS--ASFPATHRYAVTGTNGKTTSTYMLESVFRTGLGVK-------TGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDYHRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLFTPE-----RAELAVITADDEWGEKMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHR--FHVDNGAGESVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLISLAPH----AIVDFAHNPDGLTRALEAMDRPG------DG-KVMIVFGATGERDQLKRPIMGAIAAQYADIVVVTDDDPHGEAPEPIRAAVEEGAQKAENRR--ATQILNISPRAAAIDAAIALAGEHDAILIAGRGHETEQDVDGVDIALDDRVETARALRAHGFEILPDYQRMLEESDSKTAEGMVKND Cellulomonas_flavigena ------------------------------------------------MTSPLGRLRPERPPVRRVEDLAADLDLVTVGA----------------------PAAGLTFTGVTMSSTDVE-PGDLFVAVPGLKVHGARFAADAVARGAVAVLTDDDGVAAVP-PD--------VPVLVAHDPRSLAGPVASWALGN---PASRLVTVGVTGTNGKTTTTYFVDAALRAHHAR--------TAVLGTVELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGALTTEVSSHALALGRVLGTRFDVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPE-----QARRGVVVVDDAWGRRLAEEAAIP-VETVSTHVGAPE----------AAGATWAVVEADVGLDGVGSRFVLRGPDGARHVAHSPLPGLVNVSNAALAIVLAHAA--GVPLATAIEAVGGAHA----IPGRMERVVERGDGWPLCLVDYAHTPDALVLALEAVRPIT-------PGRLVIVFGSDGDRDRGKRPIMGEIAARLADVLVVTDENPRSEDPASVRAAILAGVRDVRPDL---ADVHEATSRAQAIRDALRLAGPDDTVIVTGKGHEPTQEIAGVFHRYNDRDVFLAARAEGR------EQPA---------------- Cellulomonas_fimi ------------------------------------------------MTSPA-RMRPQHPPTHRLADVVETFALSPDRP----------------------LDAALVTTGVTVASTDVA-PGDLFVAVPGMRVHGATYAAQAVDAGAVAVVTDAAGAELAGDLG--------VPVLVAPDPRDLAGPLAAHVLDE---PARGLVTVGVTGTNGKTTTTYFVDAALRAAHRT--------TAVLGTVELRVGDEAVESPRTTVEAPALQGILALARERGAGAVAMEVSSHALALGRVRGLTFDVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPE-----QARRGVVVVDDEWGRRLAATSPVP-VETVATHVGDPH----------GADADWAVVAADIGLDGVGSTFTLRGPDGTEHAAASPLPGLVNVSNAALAIVLAHTA--GVDLATAVDAVAHAHE----IPGRMERVVERGDGLPLCLVDYAHTPDALVLALEAVRPIT-------PGRLILVFGSDGDRDQGKRPIMGQIAARLADVLVVTDENPRSEDPAVIRAAILEGVRAERPSG---TDVHEATSRAQAIRDALALATDQDTVIVTGKGHEPTQEIAGVFHRYNDRDVFLAAAAAHTPDHARAEQHA---------------- ; END; BEGIN TREES; Title MurE; LINK Taxa = Taxa; TRANSLATE 1 Amycolatopsis_mediterranei, 2 Amycolatopsis_orientalis, 3 Streptomyces_coelicolor, 4 Streptomyces_lividans, 5 Streptomyces_ghanaensis, 6 Streptomyces_griseoflavus, 7 Streptomyces_griseus, 8 Thermomonospora_curvata, 9 Rhodococcus_opacus, 10 Nocardioides, 11 Mycobacterium_tuberculosis, 12 Mycobacterium_bovis, 13 Mycobacterium_leprae, 14 Mycobacterium_smegmatis, 15 Corynebacterium_glutamicum, 16 Corynebacterium_diphtheriae, 17 Nocardia_farcinica, 18 Rhodococcus_erythropolis, 19 Saccharopolyspora_erythraea, 20 Saccharomonospora_viridis, 21 Frankia_sp., 22 Actinosynnema_mirum, 23 Arthrobacter_aurescens, 24 Arthrobacter_chlorophenolicus, 25 Rothia_mucilaginosa, 26 Cellulomonas_flavigena, 27 Cellulomonas_fimi; TREE tree_1 = (((((((9:0.12301421,18:0.138317):0.07149712,17:0.17090357):0.05373085,(15:0.18766694,16:0.23342349):0.14062371):0.01397894,(14:0.15111792,(13:0.13134771,(11:0.0,12:0.0):0.10022924):0.07413927):0.08908536):0.02518087,((19:0.16322667,22:0.14622378):0.02301828,(20:0.11181949,(1:0.04768809,2:0.05566468):0.06007644):0.06385756):0.06939851):0.02684239,(10:0.25283809,(21:0.25365176,(8:0.22160172,(7:0.08105669,((3:0.0,4:0.0):0.0593045,(5:0.03633298,6:0.03321376):7.1968E-4):0.04309302):0.1372464):0.038787):0.0109808):0.03226559):0.0494933,(26:0.1160437,27:0.092988):0.22767429,(25:0.38298037,(23:0.14633483,24:0.10166285):0.08794304):0.14043482); END;