#NEXUS [written Tue Apr 01 16:36:26 CEST 2014 by Mesquite version 2.75 (build 564) at alex/10.85.10.81] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=29; TAXLABELS Pleospora_tarda_CBS_714_68 Alternaria_infectoria_CBS_210_86 Alternaria_ethzedia_CBS_197_86 Alternaria_conjuncta_CBS_196_86 Alternaria_oregonensis_CBS_542_94 Alternaria_slovaca_CBS_567_66 Alternaria_caespitosa_CBS_177_80 Alternaria_cetera_CBS_121340 Alternaria_obclavata_CBS_124120 Alternaria_armoraciae_CBS_118702 Alternaia_abundans_CBS_534_83 Alternaria_breviramosa_CBS_121331 Alternaria_petuchovskii_M304 Alternaria_kulundii_M309 Alternaria_kulundii_M310 Alternaria_kulundii_M313 Alternaria_shukurtuzii_M307 Alternaria_tellustris_CBS_538_83 Alternaria_chlamydosporigena_CBS_341_71 Alternaria_embellisia_CBS_339_71 Alternaria_bornmuelleri_DAOM_231361 Alternaria_argyranthemi_CBS_116530 Alternaria_botrytis_CBS_197_67 Alternaria_dennisii_CBS_476_90 Alternaria_papavericola_CBS_116606 Alternaria_penicillata_CBS_116607 Alternaria_soliaridae_CBS_118387 Alternaria_caricis_CBS_480_90 Alternaria_scirpicola_CBS_481_90 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=484; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Pleospora_tarda_CBS_714_68 gtctcacagggtcgagcacaacgacgtcgacattgtcgccgtaaacgaccccttcatcgagccccactacgccgtaagtatccccggatacaagacagtcttcccgaa-aatccgcgggcggttgggccatttgttgctagtatattgcaggctacatgtaggcatacatgctcaagtatgacagcacacacggccagttcaagggtgagatcaaggtcgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcctactacgtcgtcgagtccactggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggcggagccaagaaggttgtcatctctgctccctccgctgatgcccccatgttcgtcatgggtgtcaatcacgagacatacaagtccgacatcgag???????????????? Alternaria_infectoria_CBS_210_86 ccgcaatgctatcgagcataacgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcat-cccgcgcaaacacaaacccataatagccacccacgatgccacgagcggttctacgactacagtacgcaagctacacgcaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggtcgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagtgagaccggcgcctactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggcccacctgaagggtggagccaagaaggttgttatctctgctccctccgctgatgctcccatgttcgtcatgggcgtcaaccacgagacttacaagtccgacatcgaggtgctctccaacgcct Alternaria_ethzedia_CBS_197_86 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcatccccgcgcaaacacaaacccagaatagccaccctcgatgccatcagcggttctacgactacgggacgcaagctacacgcaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggtcgacggcaacaacctgactgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcctactacgtcgtcgagtccaccggcgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgccgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtactctccaacgcct Alternaria_conjuncta_CBS_196_86 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcatccccgcgcaaacacaaacccagaacagccacccacgatgccatcagcggctctacgactacgggacgcaagctacacgcaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggtcgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcctactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgccgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtccgacatcgaggtgctctccaacgcct Alternaria_oregonensis_CBS_542_94 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcatccccgcgcaaacacaaacccagaatagccacccacgatgccatcagcgtttctacgactacgggacgcaagctacacgcaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggtcgacggcaacaacctgaccgtcaacggcaagaccatccgcttccatatggagaaggaccccgccaacatcccatggagcgagaccggcgcctactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgccgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtgctctccaacgcct Alternaria_slovaca_CBS_567_66 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcatccccgcgcgaacacaaacccataatagccacccacgatgccacgagcaattatatgactacagggcacaggctacacataggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcctactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggcccacttgaagggtggagccaagaaggttgtcatctctgctccttccgccgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtccgacattgaggtgctctccaacgcct Alternaria_caespitosa_CBS_177_80 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcatccccgcgcgaacacaaacccataatagccacccgcgatgccacgagcagttctacggctacaggacgcaggctacacgcaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcctactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggcccacttgaagggtggagccaagaaggttgtcatctctgctccctccgccgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacattgaggtgctctccaacgcct Alternaria_cetera_CBS_121340 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgtatatacaagaccgttgcagccatccgcgatgcgacgagctgttgtactatcgcacgacgcaggctacatacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgatgctcccatgtttgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtcctctccaacgcct Alternaria_obclavata_CBS_124120 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagcattcctacgtatacacaagaccgttgcagccatccgcgatgcgacgaggtgttgtaatatcgcacgacgcaggctacatacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacattccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtcctctccaacgcct Alternaria_armoraciae_CBS_118702 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgcatatacaagaccgttgcagccttccacgatgcgacgagctattgtgctatcgcaggacgcaggctacatacaggcctacatgctcaagtatgacagcacacacggccagttcaagggtgagatcaaggttgacggcaacaacttgaccgtcaacggcaagaccatccgcttccacatggagaaggaccctgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggctaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccttccgctgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtcctctccaacgcct Alternaia_abundans_CBS_534_83 ccgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgcatatacaagaccgttgcagccttccacgatgcgacgagctattgtgctatcgcaggacgcaggctacatacaggcctacatgctcaagtatgacagcacacacggccagttcaagggtgagatcaaggttgacggcaacaacttgaccgtcaacggcaagaccatccgcttccacatggagaaggaccctgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggctaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccttccgctgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtcctctccaacgcct Alternaria_breviramosa_CBS_121331 tcgcaatgctatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgcatatacaagaccgttgcagccttccacgatgcgacgggctattatgctatcgcaggacgtaggctatatacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtcctatccaacgcct Alternaria_petuchovskii_M304 ccgcaatgccatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgtcgtaagctttcccacgcccatatacactattcatagccatccttaatgcgacgagctgctgcctggttacagacctcaagctgcacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgatggcaacaacctgaccgtcaacggcaaaaccatccgtttccacatggagaaggatcccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtctaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgacgcccccatgttcgtcatgggtgtcaaccacgagacttacaagtccgacatcgaggtgctctccaacgcct Alternaria_kulundii_M309 ccgcaatgccatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgcccatatacactattcatagccatccgtaatgcgacgagctgctgcctggttacagacctcaagctgcacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggtgagatcaaggttgatggcaacaacctgaccgtcaacggcaaaaccatccgtttccacatggagaaggatcccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtctaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgacgcccccatgttcgtcatgggtgtcaaccacgagacttacaagtccgacatcgaggtgctctccaacgcct Alternaria_kulundii_M310 ccgcaatgccatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgcccatatacactattcatagccatccgtaatgcgacgagctgctgcctggttacagacctcaagctgcacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggtgagatcaaggttgatggcaacaacctgaccgtcaacggcaaaaccatccgtttccacatggagaaggatcccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtctaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgacgcccccatgttcgtcatgggtgtcaaccacgagacttacaagtccgacatcgaggtgctctccaacgcct Alternaria_kulundii_M313 ccgcaatgccatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgcccatatacactattcatagccatccgtaatgcgacgagctgctgcctggttacagacctcaagctgcacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggtgagatcaaggttgatggcaacaacctgaccgtcaacggcaaaaccatccgtttccacatggagaaggatcccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtctaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgacgcccccatgttcgtcatgggtgtcaaccacgagacttacaagtccgacatcgaggtgctctccaacgcct Alternaria_shukurtuzii_M307 ccgcaatgccatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagctttcccacgcacaaacacaacattcacagccatccataatgcgatgagctgctgcctggttgcagacatcaagctgcacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgtttccacatggagaaggatcccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtctaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggttgtcatctctgctccctccgctgacgcccccatgttcgtcatgggtgtcaaccacgagacttacaagtccgacatcgaggtgctctccaacgcct Alternaria_tellustris_CBS_538_83 atgccatagcatcgagcacaatgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcttccccgcgtacattcaaaacagtcatagccatccgcgatgcgatgagctactgcatgatcgcaggacataggctacacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgacatcaaggttgacggcaacaacctgacagtcaatggtaagaccatccgtttccacatggagaaggaccctgccaatatcccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagctaagaaggttgtcatctctgctccctcagctgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacattgaggtgctctccaacgcct Alternaria_chlamydosporigena_CBS_341_71 atgccatagcatcgagcacaatgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcttccccgcgtacattcaaaacagtcatagccatccgcgatgcgatgagctactgcatgatcgcaggacataggctacacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgacatcaaggttgacggcaacaacctgacagtcaatggtaagaccatccgtttccacatggagaaggaccctgccaatatcccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagctaagaaggttgtcatctctgctccctcagctgatgcccccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacattgaggtgctctccaacgcct Alternaria_embellisia_CBS_339_71 atgccatagcatcgagcacaatgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagcttccccgcatacatgaaaaacagtcacagccatccgcgatgcaatgaactaccgtatgatcgcacgacataggctacatacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgacatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgtttccacatggagaaggaccctgccaacatcccatggagcgagactggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccactgagaaggccaaggctcacttgaagggtggagctaagaaggttgtcatctctgcgccctccgctgatgctcccatgttcgtcatgggcgtcaaccacgagacttacaagtctgacatcgaggtgctctccaacgcct Alternaria_bornmuelleri_DAOM_231361 atgccacagcatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagcctcactacgctgtaagctttccagaatacacccaattcagtcctagccatccgcaatgcgctgagctgctccacagtcgcagaatgcagactacatgcaggcctacatgctcaagtatgacagcacccacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggcaagaccatccgcttccacatggagaaggaccccgccaacattccatggagcgagaccggcgcttactatgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggtcgtcatctctgctccctctgctgacgctcccatgttcgtcatgggcgtcaaccacgagacttacaagtccgacatcgaggttctctccaacgcct Alternaria_argyranthemi_CBS_116530 atgccacagtatcgagcacaacgacgtcgacattgtcgccgtcaacgaccccttcatcgagccccactacgctgtaagcttccccgactacacacgatacagccacagccgtccaccatgcgatgagctatctcatggccgcagaacacaggctacacgcaggcctacatgctcaagtatgacagcactcacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgtcaacggaaagaccatccgtttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcttactacgtcgttgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggtcgtcatttctgctccctctgctgacgcccccatgttcgtcatgggcgtcaaccacgagacctacaagtccgacatcgaggttctctccaacgcct Alternaria_botrytis_CBS_197_67 atgccacagtatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagtttccccaactacacacgatacagccatacccgtccacgatgcgatgagctgtttcgtggtcgcagaacgcaggctacacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgatggcaacaacctcaccgtcaacggcaagaccatccgtttccacatggagaaggaccccgccaacatcccatggagcgagaccggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggtcgtcatctctgctccctctgctgacgcccccatgttcgtcatgggcgtcaaccacgagacctacaagtccgacatcgaggttctctccaacgcct Alternaria_dennisii_CBS_476_90 atgccacagcatcgagcacaacgacgtcgacattgtcgccgtgaacgacccctttatcgagccccactacgctgtaagcttccccgagcacccaacatacagccatagccatccacgatgcgctgagctactccacagtcgcagaatgcaggctagatgcaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaagttgatggcaacaacctgactgtcaacggcaagactatccgtttccacatggagaaggaccctgccaacatcccatggagcgagaccggcgcttactacgtcgttgagtccaccggtgttttcaccaccaccgagaaggccaaggctcacttgaagggtggagccaagaaggtcgtcatctctgctccctctgctgacgcccccatgttcgtcatgggtgtcaaccacgagacgtacaagtccgacattgaggttctttccaacgcct Alternaria_papavericola_CBS_116606 atgtcacagcatcgagcataacgacgtcgacattgtcgccgtaaacgaccctttcatcgagccccactacgctgtaagcttccccgcgtacatacaatacagtcataggcatccacattgcgatgagctactgcatggttgcagaatgcaggctacacacaggcctacatgcttaagtatgacagcacacacggccagttcaagggcgagatcaaggtcgacggcaacaacctgaccgtcaatggcaagaccatccgtttccacatggagaaggaccccgccaacatcccatggagcgagactggcgcttactacgtcgttgagtctaccggtgtcttcaccaccaccgaaaaggccaaggctcacttgaagggcggagccaagaaggttgtcatctctgctccctcggctgacgcccccatgttcgtcatgggcgtcaaccacgagacctacaagtccgacattgaggttctctccaacgctt Alternaria_penicillata_CBS_116607 atgtcacagcatcgagcacaacgacgtcgacattgtcgccgtaaacgaccctttcatcgagccccactacgctgtaagcttccccgcgtacatggaagacagtcatagccatccacgttgcgatgagctactgcatggttgcacaatgcaggctacacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggtcgacggcaacaacctgaccgtcaacggcaagaccatccgtttccacatggagaaggaccccgccaacatcccatggagcgagactggcgcttactacgtcgttgagtctaccggtgtcttcaccaccaccgaaaaggccaaggctcacttgaagggcggagccaagaaggttgtcatctctgctccctcggctgacgcccccatgttcgtcatgggcgtcaaccacgagacctacaagtccgacatcgaggttctctccaacgctt Alternaria_soliaridae_CBS_118387 atgctacagcatcgagcacaacgacgtcgacattgtcgccgtgaacgaccccttcatcgagccccactacgctgtaagcttccccgtctatacacaatacagccatagccatct-cgacgcgatgagcttctgtataatcgcaggatgcaggctacacacaggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggtcgacggcaacaacctgactgtcaacggcaagaccatccgattccacatggagaaggaccctgccaacatcccatggagcgagactggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccaccgagaaggccaaggctcacttgaagggtggagctaagaaggttgtcatctctgctccctctgctgacgcccccatgttcgtcatgggcgtcaaccacgagacatacaagtctgacatcgaggtgctctccaacgcgt Alternaria_caricis_CBS_480_90 atgccacagcatcgagcacaacgacgtcgacattgtcgccgtaaacgaccccttcatcgagccccactacgctgtaagcttccccgcgtacatacaacacagtcacaaccatcatagatgcgataagctactacatggtcacagaacgtaggctacacataggcctacatgctcaagtatgacagcacacatggccagttcaagggcgagatcaaggttgacggcaacaacctgactgtcaacggcaagaccatccgtttccacatggagaaggaccctgccaacatcccatggagcgagaccggcgcctactacgtcgtcgagtccactggtgtcttcaccaccaccgagaaggccaaggcccacttgaagggtggagccaagaaggtcgtcatctctgctccctccgctgacgctcccatgttcgtcatgggtgtcaaccacgagacttacaagtctgacatcgaggtgctctccaacgcct Alternaria_scirpicola_CBS_481_90 atgccccagcatcgagcacaacgacgtcgacattgtcgccgtcaacgaccccttcatcgagcctcactacgctgtaagcttccccacgtacctacaatacactcatagtcaacct-gtgacgatcatctaccgtgtgttcgcagaacgcaggctaaacataggcctacatgctcaagtatgacagcacacacggccagttcaagggcgagatcaaggttgacggcaacaacctgaccgttaacggcaagaccatccgtttccacatggagaaggaccctgccaacatcccatggagcgagactggcgcttactacgtcgtcgagtccaccggtgtcttcaccaccactgagaaggccaaggcccacttgaagggtggagccaagaaggtcgtcatctctgctccctccgccgacgcccccatgttcgtcatgggcgtcaaccacgagacgtacaagtctgacattgaggtgctctccaacgcct ; END; begin mrbayes; outgroup Pleospora_tarda_CBS_714_68; lset nst = 6 rates = invgamma; mcmcp ngen = 10000000 printfreq = 100 samplefreq = 100 savebrlens = yes; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 484; END; BEGIN TREES; Title BI; LINK Taxa = Taxa; TRANSLATE 1 Pleospora_tarda_CBS_714_68, 2 Alternaria_infectoria_CBS_210_86, 3 Alternaria_ethzedia_CBS_197_86, 4 Alternaria_conjuncta_CBS_196_86, 5 Alternaria_oregonensis_CBS_542_94, 6 Alternaria_slovaca_CBS_567_66, 7 Alternaria_caespitosa_CBS_177_80, 8 Alternaria_cetera_CBS_121340, 9 Alternaria_obclavata_CBS_124120, 10 Alternaria_armoraciae_CBS_118702, 11 Alternaia_abundans_CBS_534_83, 12 Alternaria_breviramosa_CBS_121331, 13 Alternaria_petuchovskii_M304, 14 Alternaria_kulundii_M309, 15 Alternaria_kulundii_M310, 16 Alternaria_kulundii_M313, 17 Alternaria_shukurtuzii_M307, 18 Alternaria_tellustris_CBS_538_83, 19 Alternaria_chlamydosporigena_CBS_341_71, 20 Alternaria_embellisia_CBS_339_71, 21 Alternaria_bornmuelleri_DAOM_231361, 22 Alternaria_argyranthemi_CBS_116530, 23 Alternaria_botrytis_CBS_197_67, 24 Alternaria_dennisii_CBS_476_90, 25 Alternaria_papavericola_CBS_116606, 26 Alternaria_penicillata_CBS_116607, 27 Alternaria_soliaridae_CBS_118387, 28 Alternaria_caricis_CBS_480_90, 29 Alternaria_scirpicola_CBS_481_90; TREE con_50_majrule = (1:0.27714,21:0.060014,24:0.057308,(((((((((2:0.02684,(3:0.014246,4:0.010768,5:0.008456)1.00:0.018528)0.86:0.014605,(6:0.027708,7:0.008439)0.62:0.012567)1.00:0.078683,((8:0.007525,9:0.020255)0.97:0.01102,((10:0.002647,11:0.002643)1.00:0.016369,12:0.019892)0.99:0.013451)1.00:0.029344)0.96:0.026755,((13:0.01185,(14:0.002574,15:0.002538,16:0.002562)0.54:0.0053)1.00:0.030565,17:0.01166)1.00:0.071022)1.00:0.041323,((18:0.002619,19:0.002559)1.00:0.024913,20:0.043305)1.00:0.028186)0.86:0.015591,27:0.062743)0.58:0.012371,(28:0.058418,29:0.09566)0.71:0.017111)0.84:0.016168,(25:0.018712,26:0.015339)0.97:0.050235)0.91:0.021933,(22:0.036895,23:0.026153)0.99:0.025213)0.78:0.017478); END; BEGIN TREES; Title ML; LINK Taxa = Taxa; TRANSLATE 1 Pleospora_tarda_CBS_714_68, 2 Alternaria_infectoria_CBS_210_86, 3 Alternaria_ethzedia_CBS_197_86, 4 Alternaria_conjuncta_CBS_196_86, 5 Alternaria_oregonensis_CBS_542_94, 6 Alternaria_slovaca_CBS_567_66, 7 Alternaria_caespitosa_CBS_177_80, 8 Alternaria_cetera_CBS_121340, 9 Alternaria_obclavata_CBS_124120, 10 Alternaria_armoraciae_CBS_118702, 11 Alternaia_abundans_CBS_534_83, 12 Alternaria_breviramosa_CBS_121331, 13 Alternaria_petuchovskii_M304, 14 Alternaria_kulundii_M309, 15 Alternaria_kulundii_M310, 16 Alternaria_kulundii_M313, 17 Alternaria_shukurtuzii_M307, 18 Alternaria_tellustris_CBS_538_83, 19 Alternaria_chlamydosporigena_CBS_341_71, 20 Alternaria_embellisia_CBS_339_71, 21 Alternaria_bornmuelleri_DAOM_231361, 22 Alternaria_argyranthemi_CBS_116530, 23 Alternaria_botrytis_CBS_197_67, 24 Alternaria_dennisii_CBS_476_90, 25 Alternaria_papavericola_CBS_116606, 26 Alternaria_penicillata_CBS_116607, 27 Alternaria_soliaridae_CBS_118387, 28 Alternaria_caricis_CBS_480_90, 29 Alternaria_scirpicola_CBS_481_90; TREE 0 = (1:0.19087386045,21:0.04034777415,24:0.0401606078,(22:0.02457245685,23:0.01648732695)91:0.0171917758011,(25:0.0127993201,26:0.0051120456)66:0.0321669010606,(27:0.0411827172,((20:0.03012339725,(18:1.0E-8,19:1.0E-8)100:0.0171042447236)98:0.0176701190306,((17:0.0068305395,(13:0.00632025435,(14:1.0E-8,15:1.0E-8,16:1.0E-8)57:0.00292383868421)100:0.0206947252764)100:0.0476598860804,(((2:0.01755280905,(3:0.00886281505,4:0.00573760945,5:0.00409379055)95:0.0118168308466)74:0.00937530398649,(6:0.0168656614,7:0.0033821798)54:0.00893133009346)100:0.05099610455,((12:0.0138850781,(10:1.0E-8,11:1.0E-8)99:0.00986497328283)84:0.00881529732143,(8:0.0042041654,9:0.01186072875)68:0.00724086419118)87:0.0220923727586)83:0.0187776196988)89:0.0257587291573)71:0.00941752669014,(28:0.04155758375,29:0.06378048735)62:0.0102442035484)55:0.0107344647706)100; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 484; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 484; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1396362986870; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3425825677508330444; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8107091151299144350; mqVersion 275; checksumv 0 3 4128533918 null getNumChars 484 numChars 484 getNumTaxa 29 numTaxa 29 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 239763.0 sumSquares -1.242849381966181E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 283; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1307 668; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1024 601; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; endTell; endTell; endTell; end;