#NEXUS [written Wed Apr 09 10:34:14 PDT 2014 by Mesquite version 2.75 (build 566) at d-172-25-83-147.dhcp4.washington.edu/172.25.83.147] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=31; TAXLABELS Sesamothamnus_leistnerii_02_33 Sesamothamnus_guerichii_12_36 Sesamum_abbreviatum_07_44 Sesamum_capense_07_163 Sesamum_capense_07_46 Sesamum_indicum_AF478978 Sesamum_alatum_07_43 Sesamum_schenckii_07_178 Sesamum_lepidotum_07_45 Sesamum_lepidotum_12_34 Sesamum_rigidum_ssp_merenskyanum_07_48 Sesamum_rigidum_ssp_merenskyanum_07_183 Ceratotheca_triloba_07_156 Ceratotheca_sesamoides_12_31 Ceratotheca_sesamoides_07_162 Holubia_saccata_09_49 Harpagophytum_procumbens_99_112 Harpagophytum_zeyheri_99_152 Pedaliodiscus_macrocarpus_06_101 Pedalium_murex_07_179 Pedalium_murex_09_51 Pterodiscus_aurantiacus_06_98 Pterodiscus_kellerianus_12_39 Rogeria_longiflora_02_54A Rogeria_adenophylla_12_32 Uncarina_grandidieri_09_115 Proboscidea_louisianica_07_110 Martynia_fragrans_09_117 Proboscidea_altheaefolia_09_112 Ibicella_parodii_07_156 Buddleja_incana_2011_223 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=525; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Sesamothamnus_leistnerii_02_33 ------ACTCACCACTAACCGCACATACCCGCACAGCCTAGGGACGAGCCCGTCGCTGCTGTAGGGGAGGTGCGGCGAAGTCACCAGCCGAGTTCGCGCGCAATCGG-AACCGGC-GTCAGCCAA-AGGACACAACGTATGGATAGCGCTGCCGTAAGATAACAGGG-CTTGCAGGGCAAAGGCGGAACACGACGCG----GAGAGCCCCGACACCACGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGAACGC----GCGAACGTGCACGAGCCCAACAACCGGGTGCCGCAGCAACGAGCTAGAGAGCCTACGCCTTATGGGTC-ACCCATGCT-CCGGWAG---CCGGAGATAAATGGGGC---TTTGTTCGCAAGGTGCGAAGCACGCTTGCTGCAGGCAGTGGC-AAAACCCGAACAGG-----------------------GYACGCC-CGCTCCCTCAGCCACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACGAACAGAGG Sesamothamnus_guerichii_12_36 ------------------------------------CCTAGGGACGAGCCCGTCGCTGCTGTAGGGGAGGTACGGCGAAGTCACCAGCCGAGTTCGCGCGCAATCGG-AACCGGC-GTCAGCCAA-AGGACACAACGTATGGATAGCGCTTCCGTAAGATAACAGGG-CTTGCAGGGCAAAGGCGGAACACGACGCG----GAGAGCCCCAACACCACGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGAACAC----GCGAACGTGCACGAGCCCAACAACCGGGTGCCGCAGCAACGAGCTAGAGAGCCTACGCCTTATGGGCC-ACCCATGCT-CCGGGAC---CCGGAGATAAATGGGGC---TTTGTTCGCAAGATGCGAAGCACGCTTGCTGCAGGCAGTGGC-AAAACCCGAACAGG-----------------------GTACGCC-CGCCCCCTCAGCCACTCCTTACGATGGMCCAACTAGGAC----------------------- Sesamum_abbreviatum_07_44 -----------CCACTAACCGCACATACCCGCACAACCTAGGGACGAGCCCGTCGCTGCTGTAGGGGACGTTCGGCAAAGTCAACAGCCGGGTTCGCGCGAAAACGG-AACCGGC-GTCAGCCAA-AGGACACGACTTATGGATAGCTCTTCCGTAAGATGACAGGG-CTTGCAGGGCAAAGGCGGAACGCGACGCG----GAGAGCCCCGGCACCGCGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGCACGC----GCGAGCTTGCACGAGCCCAACAACCGGGTATCGCACCAGCGAGCTAGAGAGCCTACGCCTTATGTGCC-ACCCATGCT-CCGGGAG---CCGGAGATAAATGGGGC---CTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCAGTGGC-AAAACCCGAGCAGG-----------------------GTACGCC-CGCTGCCTCAGCCACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACGAAC----- Sesamum_capense_07_163 --------------CTAACCGCACATACCCCCACAACCTAGGGACGAGCCCGTCGCTGCTGTAGGGGACGTTCGGCAAAGTCAACAGCCRGGTTCGCGCGAAAACGG-AACCGGC-GTCAGCCAA-AGGACACGACTTATGGATAGCTCTTCCGTAAGATGACAGGG-CTTGCAGGGCAAAGGCGGAACGCGACGCG----GAGAGCCCCGGCACCGCGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGCACGC----GCGAGCTTGCACGAGCCCAACAACCGGGTATCGCACCAGCGAGCTAGAGAGCCTACGCCTTATGTGCC-ACCCATGCT-CCGGGGG---CCGGAGATAAATGGGGC---CTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCAGTGGC-AAAACCCGAGCAGG-----------------------GTACGCC-CGCTGCCTCAGCCACTCCTTACGATGGACCAACTAGGACGGT-------------------- Sesamum_capense_07_46 ---------CACCACTAACCGCACATACCCGCACAACCTAGGGACGAGCCCGTCGCTGCTGTARGGGACGTTCGGCGAAGTCAACAGCCAGGTTCGCGCGAAAACGG-AACCGGC-GTCAGCCAA-AGGACACGACTTATGGATAGCTCTTCCGTAAGATGACAGGG-CTTGCAGGGCAAAGGCGGGACGCGACGCG----GAGAGCCCCGGCACCGCGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGCACGC----GCGAGCTTGCACGAGCCCAACAACCGGGTATCGCACCAGCGAGCTAGAGAGCCTACGCCTTATGTGCC-ACCCATACT-CCGGGGG---CCGGAGATAAATGGGGC---CTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCAGTGGC-AAAACCCGAGCAGG-----------------------GTACGCC-CGCTGCCTCAGCCACTCCTTACGATGGACCAACTAGGACGGTCAT----------------- Sesamum_indicum_AF478978 ---------------------CACACACC-GTA?AACCTA-GGACGAGCCCGTCGCTGTTGTAGGGG-CGTTCGGCGAAGTCAGCAGCCGGGTTCGCGCGAGGACGG-AACCGGC-GCCAGCCAA-AGGACACGACGTATGGGTAGCGCTTCCGTAAGGTAACAGGG-CTTGCAGGGCAAAAGCGGGACGCGACGTG----GGGAGCCCCGGCGCCGCGCCCCACCTGGAGTTCCGCGGGCGACACAGGGTGCAGGGCGCGT----GCCGGCGTGCACGGGCCCAGCAACCGGGTAACGCAGCAGCGGGCTAGAGAGCCTACGCCTTGTGTGCC-ACCCATGCT-CCCGGAG---CCGGAGACAAACGGGGC--TTTCGTTCGCAAGCCGCGAAGCACGCTTGCTGCGGGCGGTGGC-AAAACCCGAGCAGG-----------------------GTACGCC-CGCCGCCCCAGCCACTCCTT------------------------------------------ Sesamum_alatum_07_43 -----------------------CATACCCCCACAACCTAGGGACGAGCCCGTCGCTGCTGTAGGGGACGTTCGGCGGAGTCAACAGCCGGGTTCACGGGAGTACGG-AACCGGC-GTCAGCCAA-AGGACACGACTTATGGATAGCTCTTCCGTAAGATGACAGGG-CTTGCAGGGCAAAGGCGGAACGCGACGCG----GAGAGCCCCGGCACCGCGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGCACGC----GCGAGCTTGCACGAGCCCAACAACCGGGTAACGCACCAACGAGCTAGAGAGCCTACGCCTTATGTGCC-ACCCATACT-CCGGGGG---CCGGAGATAAATGGGGC---CTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCAGTGGC-AAAACCCGAGCAGG-----------------------GTACGCC-CGCTGCCTCAGCCACTCCTTACGATGGACCAACTAGGACG---------------------- Sesamum_schenckii_07_178 TCGCGCACTCACCACTAACCGCACATACCCGCACAGCCTAGGGACGAGCCCGTCGCTGCTGTAGGGGACGTTCGGCGAAGTCAACAGCCGGGTTCGCGGGGATCCGG-AACCGGC-GTCAGCCAA-AGGACACGACTTATGGATAGCTCTTCCGTAAKATGACAGGG-CTTGCAGGGAAAAGGCGGAACGCGACGCG----GAGAGCCCCGGCACCGCGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGCACGC----GCGAGCTTGCACGAGCCCAACAACCGGGTAACGCAGCAACGAGCTAGAGAGCCTACGCCTTATGTGCC-ACCCATGCT-CCGGGGG---CCGGAGATAAATGGGGC---CTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCAGTGGC-AAAACCCGAGCAGG-----------------------GTACGCC-CGCCGCCTCAGCCACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACGAAC----- Sesamum_lepidotum_07_45 ------------------------------------------------------GCTGCTGTAGGGGACGTTCGGCGAAGTCAACAGCCGGGTTCGCGGGGATCCGG-AACCGGC-GTCAGCCAA-AGGACACGACTTATGGATAGCTCTTCCGTAAGATGACAGGG-CTTGCAGGGAAAAGGCGGAACGCGACGCG----GAGAGCCCCGGCACCGCGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGCACGC----GCGAGCTTGCACGAGCCCAACAACCGGGTAACGCAGCAACGAGCTAGAGAGCCTACGCCTTATGTGCC-ACCCATGCT-CCGGGGG---CCGGAGATAAATGGGGC---CTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCAGTGGCAAAAACCCGAGCAGG-----------------------GTACGCC-CGCCGCCTCAGCC------------------------------------------------- Sesamum_lepidotum_12_34 --------------------------------------------CGAGCCCGTCVCTGCTGTAGGGGACGTTCGGCGAAGTCAACAGCCGGGTTCGCGGGGATCCGG-AACCGGC-GTCAGCCAA-AGGACACGACTTATGGATAGCTCTTCCGTAAGATGACAGGG-CTTGCAGGGAAAAGGCGGAACGCGACGCG----GAGAGCCCCGGCACCGCGCCCCACCTGGAGCTTCGTGGGCGACACAGGGTGCAGGGCACGC----GCGAGCTTGCACGAGCCCAACAACCGGGTAACGCAGCAACGAGCTAGAGAGCCTACGCCTTATGTGCC-MCCCATGCT-CCGGGGG---CCGGAGATAAATGGGGC---CTTGTTCGCAAGATGCGAAGCACGCTTKCTGCGGGCAGTGGCAAAAACCCGAGCAGG-----------------------GTACGCC-CGCCGCCTCAGCCACTCCTTAC---------------------------------------- Sesamum_rigidum_ssp_merenskyanum_07_48 ----------ACCACTAACCGCACATGCCCGCACAACCTAGGGACGAGCCCGTCGCTGTTGTAGGGGCCGTTCGGCGAAGTCAGCAGCCGGCTTCGCGCGCAGGCGG-AACCGGC-GTCAGCCAA-AGGACACGACGCATGGATAGCGCTTCCGTAATATATCAGGG-CTTGCAGGGCAAAGGCGGAACGCGACGCG----GGGAGCCCCAACGCCGCGCCCCACCTGGAGCTCCGTGGGCGGCACGGGGTGCAGGGCTCGT----GCGGAATTGCACGGGCCCAACAACCTGGTACCGCGGCAGCGGGCTGGAGAGCCTACGCCTTGTGTGCC-ACCCGTGCT-CCGGGAT---GCGGAGATAAAACAGGG--CCTTGTTCGCAAGATGCGAAGCACGCCTGCTGCGGGCAGCGGC-AAAACCCGAGCAGG-----------------------GTACGCC-GGCTGCCCCAGCCACTCCTTACGATGGACCAACTAGGACGGTCAT----------------- Sesamum_rigidum_ssp_merenskyanum_07_183 --------------------------------------------CGAGCCCGTCGCTGTTGTAGGGGCCGTTCGGCGAAGTCAGCAGCCGGCTTCGCGCGCAGGCGG-AACCGGC-GTCAGCCAA-AGGACACGACGCATGGATAGCGCTTCCGTAATATATCAGGG-CTTGCAGGGCAAAGGCGGAACGCGACGCG----GGGAGCCCCAACGCCGCGCCCCACCTGGAGCTCCGTGGGCGGCACGGGGTGCAGGGCTCGT----GCGGAATTGCACGGGCCCAACAACCTGGTACCGCGGCAGCGGGCTGGAGAGCCTACGCCTTGTGTGCC-ACCCGTGCT-CCGGGAT---GCGGAGATAAAACAGGG--CCTTGTTCGCAAGATGCGAAGCACGCCTGCTGCGGGCAGCGGC-AAAACCCGAGCAGG-----------------------GTACGCC-GGCTGCCCCAGCCACTCCTTACGATGGACCAACTAGGACGGTCAT----------------- Ceratotheca_triloba_07_156 -----------CCACTAACCGCACACACCCGTACAACCTAGGGACGAGCCCGTCGCTGTTGTAGGGGACGTTCGGCGGAGTCAGCAGCCGGGTTCGCGCGAGAGCGG-AACCGGC-GTCAGCCAA-AGGACACGACGTATGGATAGCGCTTCCGTAAGATGACAGGG-CTTGCAGGGCAAAGGCGGAACACGACGCG----GAGAGCCCCAACGCCGCGCCCCACCTGGAGCTTCGTGTGCGACACGGGGTGCAGGGCGCGT----GCGGACGTGCACGAGCCCAACRACCGCGTGCCGCAGCAGCGGGCTAGAGAGCCTACGCCTTGTGTTAC-ACCCATACT-CCGGCAG---CCGGAGACAAACGGGGCT-TTTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCAGGGGC-AAAACCCGAGCAGG-----------------------GTACGCC-CGCCGCCCCAGC-------------------------------------------------- Ceratotheca_sesamoides_12_31 -----------------------------------------------------------TGCAGGGGACGTTCGGCGGAGTCAGCAGCCGGGTTCGCGCGACAGCGG-AACCGGC-GCCAGCCAA-AGGACACGACGTATGGGTAGCGCTTCCGTAAGATGGCAGGG-CTTGCGGGGCAGAGGCGGAACACGGCGCGGGGAGAGAGCCCCAACGCCGCGCCCCGCCTGGAGCTTCGTGTGCGACACAGGGTGCAGGGCGCGT----GCGGGCGTGCACGAGCCCAACAACCGGGTGCCGCAGCAGCGGGCTAGAGAGCCTACGCCTTGTGTGAC-ACCCGTACT-CCGGCAG---CCGGAGGCAGGCAGGGCT-TTTTGTTCGCAAGATGCGTAGCACGCTTGCTGCGGGCGGTGGC-AGAACCCGAGCAGG-----------------------GTACGCC-CGCCGCCCCAGCCACTCCTTACGATGGACCAACTAGGACG---------------------- Ceratotheca_sesamoides_07_162 -----------------------------------------------------------TGCAGGGGACGTTCGGCGGAGTCAGCAGCCGGGTTCGCGCGACAGCGG-AACCGGC-GCCAGCCAA-AGGACACGACGTATGGGTAGCGCTTCCGTAAGATTACAGGG-CTTGCAGGGCAGAGGCGGAACGCGGCGCGGGGAGAGAGCCCCAACGCCGCGCCCCGCCTGGAGCTTCGTGTGCGACACAGGGTGCAGGGCGCGT----GCGGGCGTGCACGAGMCCAACAACCGGGTGCCGCAGCAGCGGGCTAGAGAGCCTACGCCTTGTGTGAC-ACCCGTACT-CCGGCAG---CCGGAGGCAGGCAGGGCT-TTTTGTTCGCAAGATGCGAAGCACGCTTGCTGCGGGCGGTGGC-AGAACCCGAGCAGG-----------------------GTACGCC-C------------------------------------------------------------- Holubia_saccata_09_49 ---------------------------------------------GAGCCCGTCGCTGCTGTAGGGGACGCGCGGAGAAGTCAACAGCCGAGCTCACGCCCAAGCGG-AGCCGGC-CACAGCCAA-AGGACACGACGTATGGATAGCGCTTCCGTAAGCAAACAGGT-TATACAGGGCTAAAGCGGAACACGACGCG----GAGAGCCCCGACGCCACGCCCCACCTGGAGYTTCGTGGGCAACACAGGGTGCAGGGCGCGT----GCAGAAGTGCACGAACCCAACAACCGGGTGYTGCAGCAACGAGYTAGAGAGCCTACGCCTTSTGGGTC-ACCCATACT-CC-GGGG---CTGGAWATAAACGGGGT---TTTGTTCGCAA------------------------------------------------------------------------------------------------------------------------------------------- Harpagophytum_procumbens_99_112 ---CGCACTCACCACTAACCGCACATACCAA?ACAACCTAGGGACGAGCCCGTCGCTGTTGTAAGGGACAAGCGGAAAAGTTGCCAACCSAATTCACGCCCAAGCGGAAACCAGC-CACAACCAA-GGGACAACACGTATGGATAGTGCTTCCGTAAGCAAACAGGG-CTTGCAGGGTAAAAACGGAACACGACACG----GAGAGCCCCGACGCCACGTCCCACTTGGAGCTTCGTGGGTAGCACAGGGTGAAGAGCACGT------------ACACGAGCCCAACAACCGGGTGTCACACCAACGAGCTAGAGAGCCTACGCCTCATGGATC-ACCCATGCT-CCAGCGG---TTGGAGGTAAACGGGGC----TTGTTCGCAAGATGCGAAG?ACGCTTGCTGCCGGCAAGGGC-AGAACCGGCCCGG------------------------GTACGCC-CGTTGCCGCAGCCACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACGAAC----- Harpagophytum_zeyheri_99_152 -----------------------------------ACCTAGGGACGAGCCCGTCGCTGTTGTAAGGGACAAGCGGAAAAGTTGCCAACCGAATTCACGCCCAAGCGGAAACCARC-CACAACCAA-GGGACAACACGTATGGATAGTGCTTCCGTAAGCAAACAGGG-CTTGCAGGGTAAAAACGGAACACGACACG----GAGAGCCCCGACGCCACGTCCCACTTGGAGCTTCGTGGGTAACACAGGGTGAAGAGCACGT------------ACACGAGCCCAACAACCGGGTGTCACACCAACGAGCTAGAGAGCCTACGCCTCATGGATC-ACCCATGCT-CCAGCGG---TTGGAGGTAAACGGGGC----TTGTTCGCAAGATGCGAAGCACGCTTGCTGCCGGCAAGGGC-AGAACCGGCCCGG------------------------GTACGCC-CGTTGCC------------------------------------------------------- Pedaliodiscus_macrocarpus_06_101 -----CACTCACCACTATCCGCAGGTTCCCGTACAACCTAGGGACGAGCCCGTCGCTGTTGTAGCGGAAACGCGGAAAAGTCACCAYCCGAGTTCACGGATAAACGG-AACTCAA-CACGACCAA-GARACACAACGTATGGAGAACACTTCCGTCAGCTAACGGGG-CTTACAGGGAAAARACGGAACACGATACG----GAAAATACCCACACCACACCCAACCTGGAACYTCGTGGGCAACACAGGGTATAGGACMCGT------------ACAGGTACACATGRACCCGGTAACGCACCA-CGAACTAGAGAACCTACGCYTTATGGAAT-AACCATGCT-CCGGCAA---CCGGAGATAAACGGGGA----TTACTCGCAAGAKGWGAAGYCGGCTTACTGACAACAAGTRC-AAAACCGGATTCTG-----------------------GTACGCCACYTTG--------------------------------------------------------- Pedalium_murex_07_179 ------------------------ATTCCCGTACAACCTAGGGACGAACCCGTCGCTGTTGTAGCGGAAACGCGGAAAAGTCACCACCCGAGTTCACGGATAAACGG-AACTGAA-CACGACCAA-GGGACACGACGTATGGAGAACGCTTCCGTCAGCTAACGGGG-CTTACAGGGAAAARACGGGACGCKATACG----GAAAATACCCACACCACACCCAACCTGGAACTTCGTGGGCAACACAGGGTATAGGACACGT------------ACAGGTACACATGAACCCGGTACCGCACCA-CGAACTAGAGAGCCTACGCCTTATGGAAT-AACCATGCT-CCGGGAA---CCGGAGATAAACGGGGA----TTACTCGCAAGATGWGAAGWAGGCTTACTGCCAACAAGTGC-AAAACCGGATTCTG-----------------------GTACGCCCCTTTGTTG------------------------------------------------------ Pedalium_murex_09_51 ------------------------ATTCCCGTACAACCTAGGGACGAACCCGTCGCTGTTGTAGCGGAAACGCGGAAAAGTCACCACCCSAGTTCACGGATAAACGG-AACTGRA-CACGACCAA-GGGACMCGACGTATGGAGAACGCTTCCGTCAGCTAACGGGG-CTTACAGGGAAAAGACGGGACGCGATACG----GAAAATACCCACACCACACCCAACCTGGAACTTYGTGGGCAACACAGGGTATAGGACACGT------------ACAGGTACACATGAACCCGGTACCGCACCA-CGAACTAGAGAGCCTACGCCTTATGGAAT-AACCATGCT-CCGGGAA---CCGGAGATAAACGGGGA----TTACTCGCAAGATGCGAAGCAGGCTTACTGCCAACAAGTGC-AAAACCGGATTCTG-----------------------GTACGCCCCTTTGTKRCAGTAACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACGAAC----- Pterodiscus_aurantiacus_06_98 TCGCGCACTCACCACAATCCGCATATTCCCGTACAACCTAGGGACGAGCCCGTCGCTGTTGTAGAGGAAACGCGGAAAAGTCACCACCCGAGTTCACGGTCAAACGG-AACTGGA-CACGGCCAA-GAGACACAACCTATGGACAACGCTTCCGTCAGCTAGCGGGG-CTTACAGGGAAAAGGCGGAACACGATACG----GAAACTACCCACACCGCGCCCAACCTGGAACTTCGTGGGCAACACAGGGTATAGGACACGT------------GCAGGTACCCATGAACCCGGTACCGCACCA-CGARCTAGAGAGCCTACGCCTTATGGAAT-AACCATGCT-CCGGGAA---CCGGAGATAAACGGGGA----TTACTCGCAAGATGCGAAGCCGGCTTACTGCCAGCAAGTGC-AAAACCGGGTTCAG-----------------------GTACGCCCCTTTGCTGCAGTAACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACGAACAG--- Pterodiscus_kellerianus_12_39 ---------------TATCCGCAGATTCCCGTACAACCTAGGGACGAGCCCGTCGCTGTTGTAGAGGAAACGCGGAAAAGTCACCACCCGAGTTCACGGCTAAACGG-AACTGAA-CACGGCCAA-GAGACACAACGTATGGACAATGCTTCCGTCAGATAACGGGG-CTTACAGGGAAAAGACGGAACACGATACG----GAAAATACCGACACCACGCCCAATCTGGAGCTTCGTGGGCAACACAGGGTATAGGACACGT------------GCGGG--CCCATGAACCCGGTACCGCACCA-CGAACTTGAGAACCTACGCCTTATGGAAT-AACCATGCT-CCGGGAA---CCGGAGATAAACGGGGA----TTAATCGCAAGTTGCGAAGCCGGCTTACTGTCWGCAAGTGC-AAAACCGGGTTCAG-----------------------GTACGCACCTTTGCTGCAGTAACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACG-------- Rogeria_longiflora_02_54A ------ACTCACCACAAACCGCACATACCCGTACAACCTAGGGACGAGCCCGTCGCTGCTGTAGGGGACGCGCGGAGAAGTCAACAGCCGAGTTCACGCCCAAGCGG-AACCGGC-CACAGCCAA-AGGACACGACGTATGGATAGCGCTTCCGTAAGCAAACAGGT-TTTGCAGGGCAAAGGCGGGACACGACGCG----GAGAACCCCGACGCCGTGCCCCACCTGCAGTTCCGTGGGCGACACATGGTGCAGGGCACGT----GCAGGCGTGCACGAACCCAACAACCGGGTGCCGCAGCAACGAGCTAGAGAGCCTACGCCTTATGGGTC-ACCCATACT-CC-GGGG---CCGGAGATAAACGGGGC---TTTGTTCGCAARATGCGAAGCACGCTTGCTGCCGGCAAGGGC-AAAACCAGCTCGGGTACGCCGC-----------GCGAGTACGCC-CGCTGCCGCAGCCATTCCTTACGATG------------------------------------ Rogeria_adenophylla_12_32 ------------------------------GCACAACCTAGGGACGAGCCCGTCGCTGCTGTAGGGGAGGCGCGGAGAAGTCAACARCCRAGTTCMCGCCCAAGCGG-AACCGAC-CMCAGCCAA-AGGACACGACGTATGGATAGCGCTTCCGTAARCAAACGGGT-TTTGCAGGGCAAAGGCARAAMACSACGCG----GAGAACCCCMACGCCACGCCCCACCTGTARCTTCGTGAGCGGCACAARGTGCAGAGCACGT----ACAGGCGTGCACGAGCCCAAGAACCGGGKGCCACGGCAACGAACTAGARARCCTACGCCTTATGGGKC-MCCCATGCY-CC-GGGG---CCGGAGATAAACGGGGC--TTTTGTTCGCAARATGCGAAGCACGCTTGCTGACGGCATAGGGTAAAACCGGCTCAGGTACGCCGT-----------GCCAGTACGCC-CSCTACC------------------------------------------------------- Uncarina_grandidieri_09_115 TCGCGCACTCACCACTAACCGCACATACCCGTACAACCTAGGGACGAGCCCGTCGCTGCTGTAGGGGTCGCGBGGAGAAGTCAACAGCCGGGTTCACGCCCAAGCGG-AACCGGC-CACAGCCAA-AGGACACGACGTATGGATAGCGCTTCCGTAAGCAAACAGG--CTTGCAGGGCAAAGGCGGAACACGACGCG----GAGAGCCCCGACGCCACGYCCCACCTGGAGCTTCGTGGGCAGCACAGGGTTCAGGGCGCGT----GCGGGCGAGCACGAGCCCAACAACCGGGTGCGGCACCAGCGAGCTAGAGAGCCTACGCCTTATGGGTC-ACCCATGCT-CCGGGGG---CCGGAGATAAACGGGGC---TTTGTTCGCAAGATGCGAAGCACGCTTGCTGCCGGCAAGGGC-AAAACCGGGTCGGGTGAACCAC----------GCCCAGTACGCC-CGCTGCCGCAGCCACTCCTTACGATGGACCAACTAGGACGGTCATCAGTATACGAAC----- Proboscidea_louisianica_07_110 -----------CCACGAACCGCACATACCCGTTCAACCTAGGGACGAG-CCGTCACTGCTAAACGGGACGTGCTGATAAGTCAGCA-CCGGGTTCAAGCACGAACCG-AAGCAGC-TTCAACCAA-AGGACACAACGCATGGATAGTACTCCCGTAAGCCAACTGGG-TTTGCAAAACAAAAGCGGAACACGACGCG----GGCGCTCCCGTCACCGCACTTTGCCTGGGGTTTCGTGGGCAGCACAAGGCTCAGAGCACGC-----GAGTTGTACGCGTACCCCGTAGCCGGGTGCCGCTACA-CGAGCTAGAGAGCCTACGCCTTGTGAGCC-ACCCGTGCT-CCGGTTG---CCGGAGATAAACGGAATT-TTTTATTCGCAAGCTGCGAAGCACCCTTACTGACAGCAGCGGC-AAAACCAGCCCGGGAGCACCGT----------GCTGAGTACGC--CGCAGCCGCAGCCGCTCCTTACGATGGACCAACTAGGACGGTCAT----------------- Martynia_fragrans_09_117 ---------------GAACCGCACATACCCGTTCAACCTAGGGACGAGTCCGTCACTGCTACACGGGACGTGCTGATAAGTCAGCA-CCGGGTTCAAGCACGAACCG-AAGCGGC-TTCAACCAA-AGGACACAACGCATGGATAGTACTCCCGTAAGCCAACTGGG-TTTGTAAAATAAAAGCGGAACACGACGCG----GGCGCTCCCGTCACCGCACCCTACCTGGGGTTTCGTGGGCAGCACAAGGCACAGAGCACGC-----GAGTTGTACGCGTACCCCGTAGCCGGGTGCCACTACA-CGAGCTAGAGAACCTACGCCTTGTGAGCC-ACCCGTGCT-CCGGTTA---CCGGAGATAAACGGAATT-TTTTATTCGCAAGCTGCGAAGCACCCTTACTGACAGCAGCGGC-AAAACCAGCCCGGG--------------------------------------------------------------------------------------------- Proboscidea_altheaefolia_09_112 -------------------------------TTCAACATAGGGACGAGCCCGTCACTGCTACACGGGACGTGCTGATAAGTCAGCA-CCGGGTTCAAGCACGAACCS-AAGCGGC-TTCAACCAA-AGGACACAACGCATGGWTAGTACTCCCGTAAGCCAACCGGGTTTTGCAGGACAAAAGCGGTACACGACGCG----GGCGCTCCCGTCGCCGCRCCCCACCTGAGATTTCGTGGGCAGCACAAGGCACGGAGCACGC-----GAGTTGTACGCGTACCCCGTAACCGGGTGCCGCTACA-CGAGCTAGAGAGCCTACGCCTTGTWAGCC-ACCCGTGCT-CCGGTTG---CCGGAGATAAACGAATT--TCCTATTCGCAAGATGSGAAGCACCCTTACTGACAGCAGCGGC-AAAACCAGCCCGGGAGCACCGT----------GCTTAGTACGC--CGCAGCCGCAGCCGCTCCTTACGATGGACCAACTAG-------------------------- Ibicella_parodii_07_156 --------------------------------------------CGAGCCCGTCACTGCTGCAGGGAACGTGCTGTGAAGTCAGCA-CCAAGTTCAGGCACGAGCCG-AACCKGC-CTCAACCAA-AGGACACAACATATGGATAGTGCTCCCGTAAGTTAACCGAT-TTTGCAGGGCAAAGGCGGAACACGACGCG----GGCGTTCCCGTCGCCGCACCCCACCTGGGGTTTCGTGGGCGGCACAAGGCGCAGGGCACGC-----GAGTTGTACGCGTACCCCGCAGCCGGGTGCCGCTGCA-CGAGCTAGAGAGCCTACGCCTTGTGAGCCAACCCGTGCT-CCGGTAG---CCGGAGATAAACGGATTTCTTTTGTTCGCAAGATGCGAAGCACGCTTGCTGACGGCAGCGGCAAAAACTAGCGCGGGAGCGCCGT----------GCTGAGTACGC--CGCGGCCGCAGCCACTCCTTACGATGGACCAACTAGG------------------------- Buddleja_incana_2011_223 -----------------------------------------GGACGAACCCGTCGCTGCTGTACGGTCCGTTCGGAGAAGTAAGGAGCCGAGTTCACGAACAAACGG-AACCGGC-AGCAGGCGATAGAACACGACTTATGGGTGTTGCTCCCGTGTGCCAACCGAT-TGTGCAGGGCTAAGGCGGAACACGACGCG----GGGAGCCCCGGCGCCGCGCCCCACCTGGAGTTTCGTAAGCGGCACGCGGTGCAGGGCGCGTTCACGGAGGCGTGCACGAGCCCAACAACCGAGCACCTCAG-AGCGAGCTAGAGAGCCTACGCCTTGTCACTC-ACCCATGCTCCCGGGGG---CCGGAGATAAACGGGGC--TTTTGTTCGCAAGCCGCGAAGCACGCTTGCTGACAGCAAAAGC-AAAACTAGCCCAGGAGCGCCGA----------GCCGAGTACGC--TTTGGCCGCAGCTACTCCTTACGATG------------------------------------ ; END; BEGIN TREES; Title 'Trees from "ETS-MLwithBootstrap.corrected.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Sesamothamnus_leistnerii_02_33, 2 Sesamothamnus_guerichii_12_36, 3 Sesamum_abbreviatum_07_44, 4 Sesamum_capense_07_163, 5 Sesamum_capense_07_46, 6 Sesamum_indicum_AF478978, 7 Sesamum_alatum_07_43, 8 Sesamum_schenckii_07_178, 9 Sesamum_lepidotum_07_45, 10 Sesamum_lepidotum_12_34, 11 Sesamum_rigidum_ssp_merenskyanum_07_48, 12 Sesamum_rigidum_ssp_merenskyanum_07_183, 13 Ceratotheca_triloba_07_156, 14 Ceratotheca_sesamoides_12_31, 15 Ceratotheca_sesamoides_07_162, 16 Holubia_saccata_09_49, 17 Harpagophytum_procumbens_99_112, 18 Harpagophytum_zeyheri_99_152, 19 Pedaliodiscus_macrocarpus_06_101, 20 Pedalium_murex_07_179, 21 Pedalium_murex_09_51, 22 Pterodiscus_aurantiacus_06_98, 23 Pterodiscus_kellerianus_12_39, 24 Rogeria_longiflora_02_54A, 25 Rogeria_adenophylla_12_32, 26 Uncarina_grandidieri_09_115, 27 Proboscidea_louisianica_07_110, 28 Martynia_fragrans_09_117, 29 Proboscidea_altheaefolia_09_112, 30 Ibicella_parodii_07_156, 31 Buddleja_incana_2011_223; TREE bestREP2 = ((((25:0.06500266,(((((4:0.00222875,(5:0.00562146,(7:0.01031064,(9:1.0E-8,10:1.0E-8,8:1.0E-8)97.90:0.01417382)69.40:0.00882481)20.30:0.00307585)35.40:0.00212706,3:1.0E-8)96.30:0.02677179,((11:1.0E-8,12:1.0E-8)100.00:0.08440219,(6:0.05998996,(13:0.01301141,(15:0.00387792,14:0.00844898)100.00:0.03660046)89.70:0.01848266)81.50:0.01510737)69.90:0.01938397)64.60:0.02086598,(2:0.01293021,1:0.00825053)98.90:0.02348646)99.20:0.05253089,(26:0.02355358,((18:1.0E-8,17:0.00229743)100.00:0.0877209,(22:0.01522376,(23:0.02836012,((20:0.00465653,21:1.0E-8)83.40:0.0144746,19:0.02168202)95.50:0.02474457)59.10:0.00690737)100.00:0.18782676)71.50:0.01573247)58.60:0.00594807)61.00:0.01443131)23.30:0.00530258,16:0.04890475)24.70:0.00683056,24:0.01918287)79.00:0.04834715,(30:0.01173162,((28:0.01293807,27:0.01333263)99.70:0.01718724,29:0.02668313)100.00:0.08035292)100.00:0.12324987,31:0.15505948)100.00; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 525; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 525; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 525; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1397064854999; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5165091539103257360; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7163526456345988072; mqVersion 275; checksumv 0 3 2750463427 null getNumChars 525 numChars 525 getNumTaxa 31 numTaxa 31 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 205915.0 sumSquares -9.223372036854774E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 890 716; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5165091539103257360 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1338.1397003607020.5424154127443074078; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 790 649; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(31:0.07752974,((30:0.01173162,(29:0.02668313,(27:0.01333263,28:0.01293807)99.70:0.01718724)100.00:0.08035292)100.00:0.12324987,(24:0.01918287,(16:0.04890475,(25:0.06500266,((26:0.02355358,((17:0.00229743,18:1.0E-8)100.00:0.0877209,(22:0.01522376,(23:0.02836012,(19:0.02168202,(20:0.00465653,21:1.0E-8)83.40:0.0144746)95.50:0.02474457)59.10:0.00690737)100.00:0.18782676)71.50:0.01573247)58.60:0.00594807,((1:0.00825053,2:0.01293021)98.90:0.02348646,(((11:1.0E-8,12:1.0E-8)100.00:0.08440219,(6:0.05998996,(13:0.01301141,(14:0.00844898,15:0.00387792)100.00:0.03660046)89.70:0.01848266)81.50:0.01510737)69.90:0.01938397,(3:1.0E-8,(4:0.00222875,(5:0.00562146,(7:0.01031064,(8:1.0E-8,9:1.0E-8,10:1.0E-8)97.90:0.01417382)69.40:0.00882481)20.30:0.00307585)35.40:0.00212706)96.30:0.02677179)64.60:0.02086598)99.20:0.05253089)61.00:0.01443131)23.30:0.00530258)24.70:0.00683056)79.00:0.04834715)100.00:0.07752974);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7163526456345988072 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 790 649; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;