#NEXUS 

Begin trees;  [Treefile saved Friday, April 11, 2014  1:05 PM]
[!
>Data file = Malaxis_irmae_combined.nex
>Heuristic search settings:
>  Optimality criterion = parsimony
>    Character-status summary:
>      Of 2116 total characters:
>        All characters are of type 'unord'
>        All characters have equal weight
>        1347 characters are constant
>        310 variable characters are parsimony-uninformative
>        Number of parsimony-informative characters = 459
>    Gaps are treated as "missing"
>    Multistate taxa interpreted as uncertainty
>  Starting tree(s) obtained via stepwise addition
>  Addition sequence: random
>    Number of replicates = 1000
>    Starting seed = 1745771957
>  Number of trees held at each step during stepwise addition = 1
>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
>  Steepest descent option not in effect
>  Initial 'MaxTrees' setting = 200 (will be auto-increased by 100)
>  Branches collapsed (creating polytomies) if maximum branch length is zero
>  'MulTrees' option in effect
>  Topological constraints not enforced
>  Trees are unrooted
>
>Heuristic search completed
>   Total number of rearrangements tried = 8988303
>   Score of best tree(s) found = 1553
>   Number of trees retained = 1
>   Time used = 5.37 sec
]
	Translate
		1 Bulbophyllum_lobbii,
		2 Dendrobium_aphyllum,
		3 Oberonia_wappeana,
		4 Hippeophyllum_micranthum,
		5 Stichorkis_gibbosa,
		6 Dienia_latifolia,
		7 Crepidium_acuminatum,
		8 Diteilis_nervosa,
		9 Liparis_loeselii,
		10 Crossoliparis_wendlandii,
		11 Crossoglossa_fratrum,
		12 Tamayorkis_porphyrea,
		13 Malaxis_zempoalensis,
		14 Malaxis_brachyrrhynchos,
		15 Malaxis_lepidota,
		16 Malaxis_hagsateri,
		17 Malaxis_histionantha,
		18 Malaxis_carpinterae,
		19 Malaxis_cipoensis,
		20 Malaxis_irmae,
		21 Malaxis_hastilabia,
		22 Malaxis_lepanthiflora,
		23 Malaxis_maxonii,
		24 Malaxis_molotensis,
		25 Malaxis_moritzii,
		26 Malaxis_parthonii,
		27 Malaxis_rosilloi,
		28 Malaxis_spicata,
		29 Malaxis_pandurata,
		30 Malaxis_soulei
		;
tree PAUP_1 = [&R] ((1:93,2:109):0,(((3:66,4:50):58,5:37):34,(((6:18,7:23):9,8:12):78,(9:45,(10:99,(11:122,(12:67,((((13:10,15:8):2,14:16):15,(((16:10,(18:12,(22:3,23:0):7):2):3,(21:5,25:6):11):13,(((17:14,24:15):4,(((19:12,20:11):3,26:19):3,28:16):9):7,27:16):10):11):21,(29:37,30:36):16):14):13):31):16):76):33):67);
End;