#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=12; TAXLABELS Pseudonectria_buxi_CBS_125483_HQ897800 Volutella_ciliata_DAOM_226718_HQ897802 Volutella_citrinella_DAOM_226720_HQ897821 Pseudonectria_pachysandricola_DAOM_195309_HQ897807 Pseudonectria_pachysandricola_KUS_F25663_JN797821 Pseudonectria_pachysandricola_CBS_501.63_JF937567 Pseudonectria_pachysandricola_CBS_476.92_JF937566 Pseudonectria_pachysandricola_A.R._4592_JF832658 Pseudonectria_sp._AUMC_6707_JQ425377 Pseudonectria_rusci_AG08NE22 Pseudonectria_rusci_CLL12006 Bionectria_sporodochialis_CLL_GUY_12_046 ; END; BEGIN CHARACTERS; TITLE Pseudonectria_rusci; DIMENSIONS NCHAR=613; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Pseudonectria_buxi_CBS_125483_HQ897800 GTCGTAACAAGGTCTCCGTTGGTG-AACCAGCGGAGGGATCATTACCGAGTTTACAACTCACCAACCCCTGTGAAC-ATACCTCTTGTTGCCTCGGCGGGATCGCCCCGGCG-CCTTCG------GGCTGCCGGACCCAGGCGCCCGCCGGAGGACCA---TCAAACTCTGTATTTTATTTCAGGATTCTTCTGAGTAT--ACAAAACAAATGAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAACCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCAAGCCCCTTTGGGCTTGGTGTTGGGGATCGGCCCGC--CCCGTGCGGCGCC----GGCCCCGAAATCTAGTGGCGGTCACGCCTGCAGCCTCCTCTGCGTAGTAGCAA-TATCTCGCACCGGAA-CGCAGCG-CGGCCACGCCGTAAAACCCCCAACTT-CTGAAAGGTTGACCTCGGATCAGGTAGGACTACCCGCTGAACTTAAGCATATCAATAAGGCGGAGGA- Volutella_ciliata_DAOM_226718_HQ897802 ---GTAACAAGGTCTCCGTTGGTG-AACCAGCGGAGGGATCATTACCGAGTTTTCAACTCCCAAACCCCTGTGAAC-ATACCAATCGTTGCCTCGGCGGGAGAGCCCCGGGCGTTGGCGAAAGCCTCGCACCGGTATCAGGCGCCCGCCGGAGGACCCAAAC-AAACTCT---TGAATTCTAAAGTATCTTCTGAGTAAT-ATAAGTTAAATAAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCA----G-CTTGGTGTTGGGGATCGGCACAGGCGCCCTCGGGCGCCCGCCGTCCCCTAAATCTAGTGGCGGTCCCGC-TGCAGCCTCCTCTGCGTAGTAGTTTTCTCCTCGCAAGGGCAGCTCGGTGGCGACCTCGCCGTAAAACCCCCAACTT-CTGAAAGGTTGACCTCGAATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAT------------ Volutella_citrinella_DAOM_226720_HQ897821 ---GTAACAAGGTCTCCGTTGGTG-AACCAGCGGAGGGATCATTACCGAGTTTACAACTCCCAAACCCCTGTGAAC-ATACCTAACGTTGCCTCGGCGGGAAAGCCCCGGGCGCTGGCGCAAGCCTCGCACCGGTACCAGGCGCCCGCCGGAGGACCCAAACCAAACTCT---TGTATTCTAAAGAATCTTCTGAGTAACCATAAGC--AATAAA-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT----G-CTTGGTGTTGGGGATCGGCGTAG-CGCCCTCGGGCGTC-GCCGTCCCCTAAATCTAGTGGCGGTCCCGC-TGTAGCCTCCTCTGCGTAGTAGTTTTCTCCTCGCACTGGAATCTCGGCGGTG-CCCTGCCGTAAAACCCCCAACTTACCGAAATGTTGACCTCGAATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAAT------------ Pseudonectria_pachysandricola_DAOM_195309_HQ897807 ----GTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTACCGAGTTTACAACTCCCAAACCCCTGTGAATCTTACCTTTTGTTGCCTCGGCGG--TCGCCCCGAGGGGATTCG------TCCCCGCGGAACCAGGCGCCCGCCGGAGGACC----CCAAACTCT-TGTTTATCTTATGGTATCTTCTGAGTAA--A--AAACAAATAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGCGG-CTTGGTGTTGGGGATCGGCC--------GTCAAACGCC----GTCCCCGAAATCTAGTGGCGGTCACGC-TGTAGCTTCCTCTGTGTAGTAACT--TACCTCGCACTGGAA-AGCGGCG-CGGCCACGCCGTTAAACCCCCAACTT--CTGAATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAG--------- Pseudonectria_pachysandricola_KUS_F25663_JN797821 ----------------------------------------CATTACCGAGTTTACAACTCCCAAACCCCTGTGAATCTTACCTTTTGTTGCCTCGGCGG--TCGCCCCGAGGGGATTCG------TCCCCGCGGAACCAGGCGCCCGCCGGAGGACC----CCAAACTCT-TGTTTATCTTATGGTATCTTCTGAGTAA--A--AAACAAATAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGCGG-CTTGGTGTTGGGGATCGGCC--------GTCAAACGCC----GTCCCCGAAATCTAGTGGCGGTCACGC-TGTAGCTTCCTCTGTGTAGTAACT--TACCTCGCACTGGAA-AGCGGCG-CGGCCACGCCGTTAAACCCCCAACTT--CTGAAT------------------------------------------------------------- Pseudonectria_pachysandricola_CBS_501.63_JF937567 ---------------------------------------------CCGAGTTTACAACTCCCAAACCCCTGTGAATCTTACCTTTTGTTGCCTCGGCGG--TCGCCCCGAGGGGATTCG------TCCCCGCGGAACCAGGCGCCCGCCGGAGGACC----CCAAACTCT-TGTTTATCTTATGGTATCTTCTGAGTAA--A--AAACAAATAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGCGG-CTTGGTGTTGGGGATCGGCC--------GTCAAACGCC----GTCCCCGAAATCTAGTGGCGGTCACGC-TGTAGCTTCCTCTGTGTAGTAACT--TACCTCGCACTGGAA-AGCGGCG-CGGCCACGCCGTTAAACCCCCAACTT--CTGAATG------------------------------------------------------------ Pseudonectria_pachysandricola_CBS_476.92_JF937566 ---------------------------------------------CCGAGTTTACAACTCCCAAACCCCTGTGAATCTTACCTTTTGTTGCCTCGGCGG--TCGCCCCGAGGGGATTCG------TCCCCGCGGAACCAGGCGCCCGCCGGAGGACC----CCAAACTCT-TGTTTATCTTATGGTATCTTCTGAGTAA--A--AAACAAATAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGCGG-CTTGGTGTTGGGGATCGGCC--------GTCAAACGCC----GTCCCCGAAATCTAGTGGCGGTCACGC-TGTAGCTTCCTCTGTGTAGTAACT--TACCTCGCACTGGAA-AGCGGCG-CGGCCACGCCGTTAAACCCCCAACTT--CTGAATG------------------------------------------------------------ Pseudonectria_pachysandricola_A.R._4592_JF832658 --------------------------------------------ACCGAGTTTACAACTCCCAAACCCCTGTGAATCTTACCTTTTGTTGCCTCGGCGG--TCGCCCCGAGGGGATTCG------TCCCCGCGGAACCAGGCGCCCGCCGGAGGACC----CCAAACTCT-TGTTTATCTTATGGTATCTTCTGAGTAA--A--AAACAAATAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCAGCGG-CTTGGTGTTGGGGATCGGCC--------GTCAAACGCC----GTCCCCGAAATCTAGTGGCGGTCACGC-TGTAGCTTCCTCTGTGTAGTAACT--TACCTCGCACTGGAA-AGCGGCG-CGGCCACGCCGTTAAA------------------------------------------------------------------------------- Pseudonectria_sp._AUMC_6707_JQ425377 -------------CTCCGTAGGGGTGACCTGCGGAGGGATCATTACCGAGTTTACAACTCCCAAACCCCTGTGAACTATACCTCTTGTTGCCTCGGCGG--TCGCCCCG----GGCCCT------CCAGCCCGGAACCAGGCGCC-GCCGCAGGACC----TCAAACTCT-TGTTTATACTATGGTATCTTCTGAGTAA--A--ACACAAATAAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTC-ACGG-TTTGGTGTTGGGGATCGGCC---------TTACCCGCC----GTCCCCGAAATCTAGTGGCGGTCTCGC-TGTAGCATCCTCTGCGTAGTAATA--CACCTCGCACTGGAA-CGCGGCG-CGGCCAAGCCGTTAAACCCCCAACTT--CTGAATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCCGGAGGAA Pseudonectria_rusci_AG08NE22 ----------------------------CTGCGGAGGGATCATTACCGAGTTTACAACTCCCAAACCCCTGTGAATCTTACCTCATGTTGCCTCGGCGG--TCGCCCCGGAGGGATTCG------TCCCCCCGGAACCAGGCGCCCGCCGGAGGACC----C-AAACTCT-TGTTTACTTTATGGTATCTTCTGAGTAA--A--AAACAAATAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCCGTGG-CTCGGTGTTGGGGATCGGCC--------GTCAAACGCC----GTCCCCTAAATCTAGTGGCGGTCACGC-TGTAGCTTCCTCTGTGTAGTAATT--TACCTCACTCTGGAA-AGCGGCG-CGGCCACGCCGTTAAACCCCCAACTT-TCTGAATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAG--------------------- Pseudonectria_rusci_CLL12006 ----------------------------CTGCGGAGGGATCATTACCGAGTTTACAACTCCCAAACCCCTGTGAATCTTACCTCATGTTGCCTCGGCGG--TCGCCCCGGAGGGATTCG------TCCCCCCGGAACCAGGCGCCCGCCGGAGGACC----C-AAACTCT-TGTTTACTTTATGGTATCTTCTGAGTAA--A--AAACAAATAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCCGTGG-CTCGGTGTTGGGGATCGGCC--------GTCAAACGCC----GTCCCCTAAATCTAGTGGCGGTCACGC-TGTAGCTTCCTCTGTGTAGTAATT--TACCTCACTCTGGAA-AGCGGCG-CGGCCACGCCGTTAAACCCCCAACTT-TCTGAATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAA------------- Bionectria_sporodochialis_CLL_GUY_12_046 ------------------------------GCGGAGGGATCATTACCGAGTTTACAACTCCCAAACCCATGTGAAC-ATACCTATCGTTGCTTCGGCGGGATTGCCCCGGGC-GCCTCG------TGTGCCCCGGATCAGGCGCCCGCCTAGGAAAC-----TCAACTCT---TGTTTTATTTGGAATCTTCTGAGTAG--TTTTTACAAATAAA-TAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCTGAGCGTCATTTCAACCCTCATGCCCCTAGGG-CGTGGTGTTGGGGATCGGCCAGA--GCCCGCGAGGGACGGCCGGCCCCTAAATCTAGTGGCGGACCCGT-CGTGGCCTCCCCTGCGAAGTAGTGA-TATTCCGCATCGGAG-AGCGACG-AGCCCCTGCCGTTAAACCCCCAACTT--TCCAAGGTTGACCTCAGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCA-------------- ; END; BEGIN TREES; Title Pseudonectria_rusci_NJ; LINK Taxa = Taxa; TRANSLATE 1 Pseudonectria_buxi_CBS_125483_HQ897800, 2 Volutella_ciliata_DAOM_226718_HQ897802, 3 Volutella_citrinella_DAOM_226720_HQ897821, 4 Pseudonectria_pachysandricola_DAOM_195309_HQ897807, 5 Pseudonectria_pachysandricola_KUS_F25663_JN797821, 6 Pseudonectria_pachysandricola_CBS_501.63_JF937567, 7 Pseudonectria_pachysandricola_CBS_476.92_JF937566, 8 Pseudonectria_pachysandricola_A.R._4592_JF832658, 9 Pseudonectria_sp._AUMC_6707_JQ425377, 10 Pseudonectria_rusci_AG08NE22, 11 Pseudonectria_rusci_CLL12006, 12 Bionectria_sporodochialis_CLL_GUY_12_046; TREE PAUP_1 = (12:0.11177913,((2:0.0391238,3:0.0204468):0.06445107,(1:0.08460356,(9:0.05634753,((10:1.0E-8,11:1.0E-8):0.01824036,(5:1.0E-8,(6:1.0E-8,(7:1.0E-8,(4:1.0E-8,8:1.0E-8):0.0):0.0):0.0):0.02226349):0.03950042):0.03751918):0.02280074):0.11177913)[% ] [% ] [% setBetweenBits = selected ]; END;