#NEXUS [written Fri May 16 14:11:38 BST 2014 by Mesquite version 2.75 (build 564) at PSVPGR02/10.157.24.194] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=38; TAXLABELS 'Equine_Infectious_Anemia_Virus' 'Equine_Infectious_Anemia_Virus_Strain_Liaoning' 'Feline_Immunodeficiency_Virus_FIVPcoB_Puma_Subtype_B' 'Feline_Immunodeficiency_Virus_FIVPcoA_Puma_Subtype_A' 'Feline_Immunodeficiency_Virus_FIVfca_Domestic_Cat_Subtype_C' 'Feline_Immunodeficiency_Virus_FIVfca_Domestic_Cat_San_Diego_Isolate' 'Feline_Immunodeficiency_Virus_FIVoma_Palla''s_Cat' 'Maedi-Visna_Virus' 'Ovine_Lentivirus' 'Caprine_Arthritis_Encephalitis_Virus' 'Simian_Immunodeficiency_Virus_SIVsyk_Syke''s_Monkey' 'Simian_Immunodeficiency_Virus_SIVtal_Gabon_Talapoin' 'Simian_Immunodeficiency_Virus_SIVtal_Angolan_Talapoin' 'Simian_Immunodeficiency_Virus_SIVgsn_Greater_Spot_Nosed_Monkey' 'Simian_Immunodeficiency_Virus_SIVmus_Mustached_Guenon' 'Simian_Immunodeficiency_Virus_SIVmon_Mona_Monkey' 'Simian_Immunodeficiency_Virus_SIVden_Dent''s_Mona' 'Simian_Immunodeficiency_Virus_SIVdeb_De_Brazza''s_Monkey' 'Simian_Immunodeficiency_Virus_SIVrcm_Red_Capped_Mangabey' 'Simian_Immunodeficiency_Virus_SIVdrl_Drill' 'Simian_Immunodeficiency_Virus_SIVmnd2_Mandrill' 'Simian_Immunodeficiency_Virus_SIVcpz_Chimpanzee' 'Human_Immunodeficiency_Virus_HIV_1_Group_M' 'Human_Immunodeficiency_Virus_HIV_1_Group_O' 'Simian_Immunodeficiency_Virus_SIVagmSab_African_Green_Monkey_Grivet' 'Simian_Immunodeficiency_Virus_SIVagmTan_African_Green_Monkey_Tantalus' 'Human_Immunodeficiency_Virus_HIV_2' 'Simian_Immunodeficiency_Virus_SIVsmm_Sooty_Mangabey' 'Simian_Immunodeficiency_Virus_SIVsun_Sun_Tailed_Monkey' 'Simian_Immunodeficiency_Virus_SIVlhoest_Lhoests_Monkey' 'Simian_Immunodeficiency_Virus_SIVcol_Mantled_Guereza' 'Jembrana_Disease_Virus' 'Bovine_Immunodeficiency_Virus' 'RELIK_European_Rabbit' 'RELIK_Brown_Hare' 'Prosimian_Immunodeficiency_Virus_pSIVgml_Gray_Mouse_Lemur' 'Prosimian_Immunodeficiency_Virus_pSIVfdl_Fat_Tailed_Dwarf_Lemur' 'Prosimian_Immunodeficiency_Virus_pSIVmb_Mohol_Bushbaby' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=4345; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Equine_Infectious_Anemia_Virus' -----------------------------------------------------------------------------------------------------------------------------------------------------------atgcagaagtgttccaaaaaacgggaagcaaggggctcaagggaggccccagaaacaaactttcccgatacaacagaag--agtcagcacaacaaatctgttgtacaagagactcctcagactcaaaatctgtacccagatctgagcgaaataaaaaaggaatacaatgtcaaggagaaggatcaagtagaggatctcaacctggacagtttgtgggag-------------------------------------------------------------------------------------------------------------------------------------------------taacatataatctagagaaaaggcctactacaatagtattaattaatgatactcccttaaatgtactgttagacacaggagcagatacttcagtgttgactactgcacattataataggttaaaatatagagggagaaaatatcaagggacgggaataataggagtgggaggaaatgtggaaacattttctacgcctgtgactataaagaa---------------aaagggtagacacattaagacaagaatgctagtggcag---atattccagtga------ctattttgggacgagatattcttcaggacttaggtgcaaaattgg---ttttggcacagct---ctccaaggaaataaaatttagaaaaatagagttaaaagagggcacaatggggccaaaaattcctcaat-ggccactcactaaggagaaactagaaggggccaaagagatagtccaaagactattgtcagagggaaaaatatcagaagctagtgacaataatccttataattcacccatatttgtaataaaaaagaggtctggca---aatggaggttattacaagatctgagagaattaaacaaaacagtacaagtaggaacggaaatatccagaggattgcctcacccgggaggattaattaaatgtaaacacatgactgtattagatattggagatgcatatttcactataccctt---agatccagagtttagaccatatacagctttcactattccctccattaatcatcaagaaccagataaaagatatgtgtggaaatgtttaccacaaggattcgtgttgagcccatatatatatcagaaaacattacaggaaattttacaaccttttagggaaagatatcct---gaagtacaattgtatcaatatatggatgatttgttcatgggaagtaatggttctaaaaaacaacacaaagagttaatcatagaattaagggcgatcttactggaaaagggttttgagacaccagatgataaattacaagaagtgccaccttatagctggctaggttatcaactttgtcctgaaaattggaaagtacaaaaaatgcaattagacatggtaaa------gaatccaacccttaatgatgtgcaaaaattaatggggaatataacatggatgagctcagggatcccagggttgacagtaaaacacattgcagctactactaagggatgtttagagttgaatcaaaaagtaatttggacggaagaggcacaa---------------------------------------------------------------------------------------------------------------------------aaagagttagaagaaaataatgagaagattaaaaatgctcaagggttacaatattataatccagaagaagaaatgttatgtgaggttgaaattacaaaaaattatgaggcaacttatgttataaaacaatcacaaggaa------------tcctatgggcaggtaaaaagattatgaaggctaataagggatggtcaacagtaaaaaatttaatgttattgttgcaacatgtggcaacagaaagtattactagagtaggaaaatgtcc---aacgtttaaggtaccatttaccaaagagcaagtaatgtgggaaatgcaaaaaggatggtattattcttggctccc---agaaatagtatatacacatcaagtagttcatgatgattggagaa---tgaaattggtagaagaacctaca------tcaggaataacaata---tacactgatggggga------aaacaaaatggagaaggaatagcagcttatgtgaccagtaatgggagaactaaacagaaaaggttaggacctgtcactcatcaagttgctgaaagaatggcaatacaaatggcattagaggataccagagataaacaagtaaatatagtaactgatagttattattgttggaaaaatattacagaaggattaggtttagaaggaccacaaagtccttggt---ggcctataatacaaaatatacgagaaaaagagatagtttattttgcttgggtacctggtcacaaagggatatatggtaatcaattggcagatgaagccgcaa------aaataaaagaagaaatcatgctagcataccaaggcacacaaattaaagagaaaagagatgaagatgcagggtttgacttatgtgttccttatgacatcatgatacctgtatctgacacaaaaatcatacccacagatgtaaaaattcaagttcctcctaatagctttggatgggtcactgggaaatcatcaatggcaaaacaggggttattaattaatggaggaataattgatgaaggata-tacaggagaaatacaagtgatatgtactaatattggaaaaagtaatattaaattaatagagggacaaaaatttgcacaattaattatactac---agcatcactcaaattccagacagccttgggatgaaaataaaatatctcagagaggggataaaggatttggaagtacaggagt------------------attctgggtagaaaatattcaggaagcacaa-gatgaacatga-gaattggcatacatcaccaaagatattggcaagaaattataagataccattgactgtagcaaaacagataactcaagaatgtcctcattgcactaa---------gcaaggatcaggacctgcaggttgtgtcatgagatctcctaatc--------attggcaggcagattgcacacatttggacaataagataatattgacttttgtagagtcaaattcaggatacatacatgctacattattgtcaaaagaaaatgcattatgtacttcattggctattttagaatgggcaagattgttttcaccaaagtccttacacacagataacggcactaattttgtggcagaaccagttgtaaatttgttgaagttcctaaagatagcacataccacaggaataccatatcatccagaaagtcagggtattgtagaaagggcaaataggaccttgaaagagaagattcaaagtcatagagacaacactcaaacactggaggcagctttacaacttgctctcattacttgtaac---aaagggagggaaagtatgggaggacagacaccatgggaagtatttatcactaatcaagcacaagtaatacatgagaaacttttactaca-----gcaagcacaatcctccaaaaaatttt-----gtttttacaaaatccctggtgaacatgat---------tggaagggacctactagggtgctgtggaagggtgatggtg----cagtagtagttaatgatgaaggaaagggaataattgctgtaccattaaccaggactaagttactaataaaaccaaattga--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Equine_Infectious_Anemia_Virus_Strain_Liaoning' -----------------------------------------------------------------------------------------------------------------------------------------------------------------aaatgctccaaaaaacgggaagcaaggggctcaggggaggccccaaaaacaaactttccctgtgcagaaggaatcaatgaacaaaacaca--------aaaggaggaaaaacagcaagggaccttatatccagatttgagtcagatgaaacaggagtacaagatcaaggaagaggaaaatcaagaggatctcaatctggacagtttgtgggag-------------------------------------------------------------------------------------------------------------------------------------------------taacttataatttagaaaagagaccaactacaatagttttgattaatgacacacccttaaatgtattattggacacaggagcagacacgtcggtactaactattgcacattataataggttaaagtatagaggaaggaaatatcaaggtacaggtattgttggggttggaggtaatgtagaaacattctccactcctgttacggtaaaaag---------------gaaaggaaaacaaattaaaactagaatgttagtagcag---atatcccggtta------ctattttggggcgagatatccttcaagaattaggcgcacaattaa---taatggctcaact---ttcaaaagaaataaccccaagagaaattaaattaaaaacaggcacagtagggcctaaggttccccaat-ggccacttactaaagagaagttattaggtgctaaagaaatagtcaaaaaattgttggatgaaggtaaaatatcagaagccagtgatgataatccttataattctcctatatttggaataaaaaagaaatctggga---agtggagactattgcaagatttaagagaattaaataaggtggtacaagtaggaactgaaatatccagagggttacctcatccagggggattaattaaatgtaatcatatgacagtattagatattggagatgcctatttcactataccatt---agatccaaagtttagacaatatacagcatttactgtgccatccattaatcatcaggaaccagataaaagatatgtatggaattgcttgccacagggttttgtgttaagtccatacatatatcaaaaaacattacaggacatattacaagcttttagagaaaggcatcca---gatgtacaattatatcaatatatggatgatttattcattgggagtaatggatctaaaagacaacataaggaactagtagaagaattaagagctattcttttagaaaagggctttgagacgcctgaggataaattgcaggaagaggcaccctataattggctgggatatcaacttagtccaggcaattggaaagtacaaaagatgcaattagaattggtaaa------agaaccaacattaaatgatgtgcaaaaattaatgggaaatataacatggatgagttcaggggttcctggattaacagtgaagcaaatagctgctaccactaaaggatgcctagatttaaatcaaaaggtagtatggacggaagaagcacga---------------------------------------------------------------------------------------------------------------------------aaagaactagaggaaaataataaaaagattcaggaagctcagggattgcaatattataacccagaagaagaagtaatctgtgagattgaaattactaaaaattatgaggctacttatataataaaacagtcccaaggaa------------tattgtgggcaggaaagaaaattatgggggctaataaaggatggtccgcagcaaaaaatctaatgttattgttacaacatgtagccacagaaagtattgttagaattggaacatgtcc---aaaatttaaagtaccttttactaaagaacaagtcaaatgggaaatggagaagggatggtattattcatggctacc---agatatggtatattcacatcaagttgttcatgatgattggaaac---tgaaattagtagagcaaccaaca------tctggtataacaatt---tacactgatgggggt------aaacagaatgaagaaggagttgcagcttatgtgactagtaatgggaaaactaaacaaaaaaggttaggacctgttactcatcaaactgctgagaggatagcaatacaaatggcattagaagatactgaagagacactggtaaatatagtaactgatagttactactgttggaaaaatattacagaaggattagggttagaaggaccagacagcccctggt---ggccaataattcaaaatattagggctaatgaaatggtttattttgcttgggtaccaggtcacaagggaatatatggcaatcaattggcagatgaggctacta------aaataacagaggacattatgttagcatatcaaggcacacagattaaggaaaaaagagatgaagatgcagggtttgactcgtgtattccttatgacataataatacctgtctctgagacaaaggttatacccacagatgtaaaaatacaggtacctcataaatgttttggatgggtaactggtaagtcatcgatggctaagcaagggttattaatcaatgggggaataattgatgaaggata-cacaggtgaaatacaggtaatttgtactaacattggaaagagtaacattaaactcagggaaggacaaaagtttgcacaattaatcatattac---agcatcgatcaaatgataaacaaatctgggatgaaaataaaacatctcaaaggagagataaagggtttggaagcacaggtgt------------------attttgggtagagaatatccaagaggcacaa-gatgaacatga-aaactggcatacatctccaaagatattggcaaaaagatatgggttaccattgacggtagctagacagataactcaagaatgccctcattgtactaa---------gcaaggatctggaccagcaggttgtgtaatgagatcccctaatc--------attggcaggctgattgtacacatttagagaacaggataataatgacatttgtagagtctaattcaggatacattcatgctactctattgtccaaagaaaatgccttgtgtacttcattggctattttggaatgggtgaggttattttctcctaaatctttacatacagacaatggtactaattttgtagcagagtcagtagcaaatctgttgaaattcctgaaggtgacacatactacaggaataccttatcacccagagagccaaggcattgtggaaagagcaaacaggacattaaaagaaaaaattaaaagtcatagagaaaatactcagacacttgaagcagcattacaacttgctctcattacttgtaac---aaagggagggaaagtatgggaggacaaactccatgggaagtatttattactaatcaggctcaaacaatacatgaagaacttttattaca-----acaagcacaatcttctaaaaaatttt-----gtttttataaaattcctggtgagcataat---------tggaaggggcccaccagagtgttgtggaaaggtgatggag----cagtagtggtcaatgatgaggaaaaaggaataattgctgtgcctttaaccaggactaaattattaataagaccaaattga--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Feline_Immunodeficiency_Virus_FIVPcoB_Puma_Subtype_B' --------------------------------------------------------------------------------------------------------------------------------------------------cacagattgttatcaaatgacttcgggaaacggaaagcaggggggagctgcaaccccccagagaagtcaaatgcaggtgcagcaatctgtacttccaactgctcctccgttggaggagatgccactcctccaactataaaagcaatatggagga---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tggactcccgaccccgagttgaggcctggattaatggaagaaagataaattttttattagattcaggagcggatatatcagttatcaatgaaagagattgggaaccaggaaa---ttcaattagagagggacctcaacatatgacaggggtaggaggagtacaaaatgggataagattttcacatgtacatattgaaat---acatacagaaaaggagggaaaatgttgtcaaggatatatgtgtgtattaccagataataatctagtagataatttattaggtagagataatctacaaaagttaggggtaacaatgg---taatggctatgat---atcagatagaataccaataattaaggcaaaaatgaaagatccaaataatggacctaaagttaaacagt-ggccattatcacaagaaaagattatggcactaactgaaatagtggaaagattagaaaaggaaggaaaggtaaaaagagcagatcctaataatccatggaatactccaatattttgtataaagaagaaatcaggaa---aatggagaatgttaatagatttcagggaactaaatgcaaaaacggaaaaaggagcagaggtgcaacttgggttacctcacccagcaggattacagagaaggaaaaatgtaacagtgttagatataggagatgcttattttactatccctct---agacccagactatcagcaatatactgcattcacactgccttcaaaaaataatcaagggccaggacgaaggtatgtgtggaagagtctccctcaaggatgggtattaagtcctttgatatatcaaagtactttagacaacattttacatcctttccgcaaaaaatataaaaatgaaatagacctatatcaatatatggatgacatttatataggatcagatattcctattaaacagcatagaaaggtggtattagagcttagacaaatgctgttgtggtgggggtttgagacaccagaagataaattacaagaatctcccccttttaaatggatggggtatgaacttcatccacagggatggaagattcaaacaacaaaattggaaataccaga------atatcctactttaaatgagttacaaaaactgataggaaaaataaattgggccacacaaataataggagggttacctattagaaatctgacagacatgatgaagggagatacagagttaaattcaagaagagaatggacccctgaagcgagg---------------------------------------------------------------------------------------------------------------------------caagaagcagaagaagctaagaaagcaatagagaatttacccaatggaaattattatgataaagaaaaagaattatatgccattcttagtattaacggaccattgcagataagttatatggtatatcaattagaaggaataaaaaagcttcctttatggtatggtagaatgaatagaataagaagaaaattagaaaatacatgtgatctagctttaagagcaattaataagataaaagaagaagcaattattaggttaggaaaagagcc---tatatatcagataccctgctcaaacgaaaattgggaatcttatttaatgtctagtagatatttgaaaagcatcccaccaacagtagaatttatcaatagcagtttaatgattgaaagacatttagcatgtataaaaggagaacctataaatgaggaaggagtagaaacctggtatattgatggagga---agaaagaaaggacaaaaggcaagagcaggatggtggaaaaataaccaggaatggcaaattatggaattggag---ggatctaatcaaacagcagaagcacaagcattaaatatggccctaaaggca---ggaccagaaaaaatgaatattataactgatagtcaatatgtttataatatggtcatggctaggccggaacc---------tacagaccccttatggaaagaaataattgaagaactacaaaagaaagaagcaatctttttagattgggttccaggacataaaggaattcctggaaataaagaagtagatgaaatagtac------------------aatgtggattgattattgagggagaaggaatcttacaaaaaagagaagaagatgcaggttatgatttggtagcagcagaaaaaatatatatgcttccttctgaaactaggaaaataccaatagactgtaaactagaattaccaaaagggacagtaggattgattttgggaaagtcctctataggaagtaagggattagacgttttaggaggagtgatagattcagggta-tcgaggaaaactgtcagtaataatgataaatctgtcaagaaaaggacaatggatcgaacaaggacagaaagtagcccaattattaatcatgccagtacaacatgaattattagaacaag---gaaaggtatcattaaattcagaacgaggagaacagggatttggaagtacaggcatatttgctctaca------atcttggatggataatattgaaaaggcagaa-atggaacatga-aaaatttcatacagatgaaaagagtttacaagaactatttgggatcccaaaagtagtagccaatgaaattctacagaaatgcacaatatgtagaatgtccggatcaggagggggtcataaagggggaaaattaaaaatgggacccggaa--------cgtggcaaatagattgtacacatctagaaggacaaatattgttagtggctataaatgtggagtccaatcttatttggacaaagatactaaaacaagaaaatgctaaagaaacagtacttgcaatattagagcttatacaaacacataatgtcctagaggttcaaactgataatgggccaaattttgccaattcaagaatggaaggccttacttcctttttgggaataaatcataaatttggtatccccatgaatccacaaagtcaagcactagtggagaatactaataatgttttgaaacaatggataaaaaagtttaggcaagaagtagaaacattgcacgcagctgttgcattggctacctttgctctcaataaaaaaagaaagggtaatatagggggtatgactccatacgagttatatatttggcaagaaaataactctatacaacaatattactccagtat----tctttttaaaaaatttggaaaagagcaatggatatattataaagatattaaagataaagaa---------tggaaaggttcggtacctgtgatatattggggagaaggat----cagtgttaattaaagagcctgaaaaaggactcttcttggttcctaacagaagaattaggagagtgcctcccccgcaagagattcaggtaagtgatgcaaccttacagaatacagagtag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Feline_Immunodeficiency_Virus_FIVPcoA_Puma_Subtype_A' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------atgcaaggagtaggaggaactaacagaggagaaaaatatataaatgtacattttgaagcatattttgataaagaagtaagatgtatttgtaatggaaagatttgtgtaattccccagaataatttattagagccgttatttgggagagacaatatgaaattgctagacatcaagttgg---taatggctaatat---ttctacaaaaatccctatagtaaaagcaaaattggtagatcctaataaaggaccaaaaataaaacaat-ggcctctaactaatgaaaaaatagaagcattaacagaaatagtagagaggttagagactgaaggaaaggtaaaaagagcagatcctaataatccttggaatactccaattttttgcataaagaagaaatcaggaa---aatggagaatgttaatagattttagagaattaaataaattaactttaaaaggtgcagaagtacaattaggattaccacatccagcaggattgtctatgagaaaacaggtaacagtactagatataggagatgcctattttactataccttt---agaccctgattatcaaccatatacagcttttactttacctaataaaaataatcaaggaccaggaagaaggtatgtatggtgtagtttaccacaaggatgggtattaagtcctttaatatatcaaagtactttagataatattttacaaccatggagaaagaaatatcct---aatattgatgtatatcaatatatggatgatatatatataggatcagatttctcaagattggaacatgaaaaaattatacaagaattaagagacttattgatcttttggggatttgaaactcctgaagataaattacaacaagaaccaccctataagtggatgggatatactttatatcctaataaatggactattcaaaaaacaaaattagatattcctga------agttccaactttgaatcaattacaaaaattagcaggagttataaattgggccacacaaaatgtaggagggataaaaataaaggccttaactgaattaatgaaaggaaatcaacaattagatagttatagacagtggactccagaagctttgggacacttacaaaaaattaaagcaggagagccaaaagcagtcaccttaagacaaggtcctaaagaatcttataaagattttattgatagattgtttcaacaaatagatcaagaacaagctttagaagaagtaagaatagctaaagaagctatagaaaatttaacagacatgagttattttgataataaaaaacctgtctattgtaaatttagtattgtaggtgttcatcaagtagcatatatagtatatcaagatcaaggac------------aattatggatggggagaatgaatagacagaagaaaaaggcagagaatacttgtgatattgtattaagagctattaataaagttaggcaggaagctattgtcagacttgggatagaacc---tgtatatcagataccttgttctagagaaatatgggaatcttatttaataacatctatatatcttaagaatcctccacccgaagtacagtttattcatgcctctttgatgatggcacgaatgttaactatgttaacatcagaacctata------gagggaatagaaacatggtttattgatggaggg---agaaggttaggaaagaaagcaatatctgcatattggacttccgagggtaaagaaaaatatgagtatatagaa---ggcagtaatcagcaagcagaagtaaatgcattacggatggcacttgtagat---ggaccatcagaaatgaatattatcacagatagtcaatatat------catgaatgtattaaaacaatatccagatagtctttctggactgtggc---aaaagataatagagttattacaaagtaaaattaaaatatttctagattgggttccaggtcataaaaatattccaggaaatgtagaagtggatagaatatgtc------------------aagaaaatatgataatagaaggagatggaataatagataaaagagaagaggatgcaggatatgatttgatagcacaagaggatgtatttcttatgaaaggagaagtaagaattgttccaataaatgcaaaaataatgctccctgaaggaacttggggattaatcattggaaaatcttctatagggaagttaggtttagatgtattaggtggagtaatagatcaaggata-tagaggagctttaaatgttatacttagtaatttgactagacatggagtaaaaatcagtaaaggacaaaaaatagcacaattaataatattgccttatgtaactgagagtttggaaaaag---gaaaaatgataatggattcacaaagaggtgaaggaggatttggatcaacaggagcttatgtaacacaaatttcatcatggatggataatatagaaaaagcagaa-gatgatcatga-taagtttcatagtgatgtggtttatttaaaacagcgatttggaattcctagacaagtagcagaagaaataattagaaagtgcccattatgtatgat---------aaagggagaagtctcttatgggcaattaaaaataggagaaggta--------tatggcaaatagattgtactcatttagaaaaacttatattattagtatgtatacaaaccacttctggatttgtggtagtatacaatctaaaaagggaagatgctaaagagactggattagcctttttgaatttgtttagccaatattatgtcactgagatacaaactgataatggaccaaactttgctaatgagaggattactggtatttgttttcattttggaataaagcataagaagggaattccaataaatcctcagtctcaagcattagttgaaaatttcaatcgaacattaaaagtatgggtagacaaatttaaagaagttactgaaactttagaagctgcagtacaacttgcagttcatgctctcaatcataaaagaaagggtggattagggggtattacaccctatgagctttatgtacaacaagaatctatcagaatacaagaactatattcctctat-------cccacacaaatttttgaaagattcttggatttattataaggataggaaggataaacta---------tggaaaggtcccacgcaagtctattattggggtgaaggag----cagtattaattaaagatgaaaataataagtatcttctcattcctagaagaaggataaggagagtacctgctcctaaagatctaacacaagaggatggcttcaatcagacagaacaggagagcaataatgcctag--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Feline_Immunodeficiency_Virus_FIVfca_Domestic_Cat_Subtype_C' -----------------------------------------------------------------------------------------------------------------------------------------------------------------aaagaaccagggaaactggaagaaggggcgagctgcagccccggtaaatcaa---------gtgcagcaagcaacaatgccatctgctcctccaatggaagagacattgttagatttataaattataataaagtgggta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccactacaacattagacagaagacctgaaatactaatatttgtaaatgggtaccctataaaatttttattagatactggggcagatataacaattttaaataggagagattttcaagtaaagaa---ttctatagaaaatgggaaacagaatatgattggagtaggtggaggaaaaagaggaacaaattattgtaatgtacatctggaaatcagagatgaaaattataaaacacaatgtatatttggcaatgtttgtgttttagaagataattcactaattcaaccattgttgggtagagataacatggttaaatttaatattagattag---taatggctcagat---ctcagataaaattcccatagtgaaagtaaaaatgaaagatcctaatagaggaccacaaataaaacagt-ggccactgtcaaatgaaaaaattgaagctttaacagaaatagtagaaagattagagaaagaaggaaaagtaaaaagagctgatccaaataacccttggaatacaccagtatttgttattaagaagaaaagtggga---aatggagaatgcttatagactttagagagctaaacaaattaactgaaaagggagcagaagtccagctgggactacctcaccctgctggattacagttaaagaaacaagtaactgtattagacataggggatgcctactttaccattcccct---cgatccagattatgctccttacacagcatttactttgcctagaaaaaataatgcagggccaggaaggagatatgtgtggtgcagtctaccacagggatgggtattaagcccactaatatatcaaagtacactggataatataatacaaccttttattagacaaaatcct---caattagacatttaccaatatatggatgatatatatataggatctaatttaagtaaaaaggaacataaagaaaaggtagaagaattaagaaagttattattatggtggggatttgaaaccccagaagataaattacaggaagaacccccatataaatggatgggttatgaattacatccattaacatggacaatacaacagaaacaattagaaattccaga------gagacctactttaaatgaattacaaaaattggcagggaagattaattgggcaggtcagatcattccagatttatctataaaagcattaactagaatgatgagaggtgatcagaatttaaattcaataagagaatggactggtgaggccaag---------------------------------------------------------------------------------------------------------------------------atggaagtacaaaaagccaaagaggcaattgaaaaacaggcacaattaggatactatgatcctaataaggaagtgtatgcaaaattgagtatagtagggccacaccagatctgttatcaggtgtatcataaaaacccagaacaaa------ttttatggtatgggaaaatgagtaggcagaagaaaaaggctgaaaatacttgcgacatagctttaagagcatgttacaagataagagaagaatctattgtaaggataggaaaggaacc---aatatatgaaataccatcaagtagagaagcttgggagtcaaatttgattaattcaccatatctaaaagctccgccacctgaagtagagtttatccactctgccttaaatctaaagagagcactaagtatggtacaggataaacccatc------ttaggagcagaaacatggtatatagatggaggg---agaaagcggggaaaggcagcaaaagcagcttactggacaaatacagggaaatggcaggtaatggaaatagaa---ggaagcaatcaaaaggcagaagttcaagcattattattagcattaaaagct---ggaccagaagagatgaatataataacagattctcaatatat------agtaaatattattagtcaacaacctgatatgatggaaggagtttggc---aagaagtattagaagaactggaaaagaaagtagcaatatttatagattgggttccaggacataaaggcattccaggaaatgaagaagtagataagctctgcc------------------aaacaatgatgattgtagaaggagatggaatattagaaaaaagagcagaggatgcagggtatgacttgttagctgcaaaagaagtacatttactgccaggagaagtaaaagtaattccaacaggagtaagattaatgttacctacaggacattggggattgatacttggaaaaagttcaatgagcagcaaaggattagatgtgctaggaggagtgatagatgaaggata-tagaggagaaattggggtaataatgattaacttgtcaagaaaatcaataactttacaagagaaacaaaaggtagcacaattaataatactaccatgtaaacatgaaaatttagaacaag---gagaaataataatgaattcagagagaggagaaaagggatatggatcaacaggagtattttc------------ctcctgggttgaaagaattgaagaagcagaa-ataaatcatga-aaaatttcattcagattcacagtacttgaggactgaatttaagttacccagaatggtggctgaagaaataaaaagaaaatgccctctatgtagaat---------tagaggagaacaggtgggaggacaattaaaaattggaccaggaa--------tttggcaagtggattgcacacatttcaataataaaataattcttgtggcaattcatgtcgaatcaggattcctttgggcacaaataataccacaagaaacagctgactgcacagtcaaagcaataatgcaactcctaagtgctcataatgttacagaactgcaaacagacaatgggccaaattttagaaatcaaaaaatggaaggtttactcaattacatgggaataaaacataaatttggaataccaggcaaccctcaatctcaagctttggttgaaaatgccaataatactttaaagtgttggattcagaagtttttgcctgaaacaacatctttagacaatgctttggctctcgctctgcattgccttaattttaaacaaaggggtagaatagggggaatggccccatatgaattattaacacaacaagaatcattaagaatacaggattatttttctcaaattccaagcaaattgcaaag----------tcagtggatttactataaagatcaaaaagacaaaaat---------tggaaaggaccaatgagagtagagtattggggacaaggat----cagtgttattaaaggatgaagagaggggatattttcttgtacctaggaggcacatacggagagtcccagaaccctgcactcttcctgaaggggatgagtga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Feline_Immunodeficiency_Virus_FIVfca_Domestic_Cat_San_Diego_Isolate' -----------------------------------------------------------------------------------------------------------------------------------------------------------------aagaaattcgggaaactggaaggcggggcgagctgcagccccagtgaatcaa---------gtgcagcaaacagtaatgccatctgcacctccaatggaggaaaaattattggatttataaattacaataaagtaggta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ctactacatcattagaaaagaggccagaaatacttatatttgtgaatgggtaccctataaaatttttattagatacaggagcagatataacaattttaaataggagagattttcaagtaaaaaa---ctctatagaaaatggaagacaaaatatgattggagtagggggaggaaagagaggaacaaattatatcaatgtgcatttagagattagagatgaaaattacaagacacaatgtatatttggcaatgtttgtgtcttagaagataactcattaatacaaccattattagggagagataatatgattaaatttaatatcaggttag---taatggctcaaat---ttctgataagattccaatagtaaaagtaaagatgaaggatcctaataaaggacctcaaataaaacaat-ggccattatcaaatgaaaaaattgaagctttaacagaaatagtagaaagactagaaagggaagggaaagtaaaaagagcagatccaaataatccatggaatacaccagtatttgctataaaaaagaaaagtggaa---aatggaggatgctcatagattttagagaattgaacaaattaactgagaaaggagcagaagtccagttgggactacctcaccctgctggtttacaaatgaaaaaacaaataacagtattagatataggggatgcatatttcaccaatcccct---tgacccagattatgctccttatacagcatttactttacctaggaagaataatgcgggaccaggaagaagatttgtgtggtgtagtctaccacaaggctggattttaagtccattgatatatcaaagtacattagataatataatacaaccttttattagacaaaatcct---caattagatatttatcaatatatggatgacatttatataggatcaaacttaagtaaaaaggagcataaagaaaaagtagaagaattaagaaaattactattatggtggggatttgaaactccagaggataaattacaggaagaacccccatataaatggatgggttatgaattacatccattaacatggacaatacaacagaaacagttagaaattccaga------aaagcctacattaaatgaattacaaaaattagcaggaaaaattaattgggctagccaaactattccagaattaagtataaaatcattaactaacatgacgagaggaaatcaaaacctaaattcaacaagagagtggactgaggaagctaga---------------------------------------------------------------------------------------------------------------------------ctagaagtacagaaggccaaaagggctattgaagaacaagtacaactaggatattatgaccctagtaaagaattgtatgctaaattaagcttagtgggaccacatcaaataagttatcaagtatatcagaagtgtccagaaaaga------tcttatggtatggaaaaatgagtaggcaaaagaaaaaggcagaaaatacgtgtgatatagcgttaagagcatgctacaaaataagggaagaatccattataagaataggaaaagaacc---aagatatgaaatacctacttctagagaagcctgggaatcaaatttaattaattcaccatatcttaaagccccacctccagaagtagactatatccatgctgctttaaacataaaaagagcactaagtatgataaaagatcctccaata------tcaggagcagaaacgtggtatatagatggaggt---agaaagctaggaaaagcagcaaaagcagcctattggacagatacaggaaagtggcaagtaatggaattagaa---ggtagtaatcagaaggcggaaatacaagcattattattggcattaaaggca---ggaccagaggaaatgaatattataacagattctcagtatat------gataaatattcttagtcaacaaccagataagatggaaggaatctggc---aagaagttttagaagaattggaaaagaaaacagcaatatttatagattgggtcccaggacataaaggtattccaggaaatgaggaagtagataagctttgtc------------------aaacaatgatgataatagaaggggatgggatattagataaaagaacagaagatgcaggatatgatttattagctgcaaaagaaatacatctattaccaggagaggtaaaagtaataccaacgggagtaaaactaatgttgcctaaaggacattggggattaataatgggaaaaagctcgatagggagtaaaggattggatgtattaggaggggtaatagatgaaggata-tcgaggtgaaattggagtaataatgattaatttatcaaaaaaatcaatcactttgttggaacaacagaagatagcacaattaataatattgcctcataaacatgaagcattagaacagg---ggaaagtagtaatggattcagagagaggagaaaaaggttatgggtcaacaggagtattctc------------ctcttgggttgacagaattgaggaagcagaa-acaaatcatga-aaaatttcactcagatccgcaatacttaaggactgaatttaatttacccaagatggtggcagaagagataagacgaaaatgccctgtatgtaggat---------tagaggagaacaagtgggagggcaattgaagatagggcctggta--------tctggcaaatggattgcacacactttgatggcaaaataattcttgtggctatacatgtggaatcaggatatatatgggcacaaataatctctcaagaaactgctgattgtacagttaaagctgtcttacaattattgagtgctcatattgttacggagttacaaacagataatggaccaaattttaaaaatcaaaagatggaaggagtactcaattatatgggtgtgaaacataagtttggtatcccaggaaacccacaatcacaagcattagttgaaaatgtaaatcagacattaaaagtctgggttcacaaatttttgcctgaaacaacctccttggataatgcattagctctcgctgtgcattgtctcaattttaaacaaaggggtagaataggagggatggccccttatgaattattagcacaacaagaatccttaagaatacaagattatttctctgcaataccacaaaaattgcaagc----------acaatggatttattataaagatcaaaaagataagaaa---------tggaaagggccaatgagagtagaatactggggacaaggat----cagtgttattaaaggatgaagagaagggatattttcttatacctaggagacacgtaaagagagtcccagaaccctgcgctcttcctgaaggggatgagtga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Feline_Immunodeficiency_Virus_FIVoma_Palla''s_Cat' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccaaataatccttggaatacccctattttttgtataaaaaagaaatcgggga---aatggagaatgttaatagactttagaactcttaatgagttaacagaaaagggtgcagaagttcagttgggactgcctcatccggcaggattacaagaaaggaaacaagtaacagtattggatattgcagatgcatattttactataccatt---ggatccagattatgcaccttacactgcttttactttgcccaaagtaaataattcaggtccaggagaaagatttgaatggtgtagtttacctcaaggatgggtattaagccccttgatttatcagagtacattaaataatattttaaaaccattcagagaacagcatcca---gaaatagatttataccaatatatggatgatatatatataggatcagatttaggaaaaaaggagcataaacaaattgtagaagaattaaggaaattat--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Maedi-Visna_Virus' -----------------------------------------------------------------------------------------------atgccatcattgtggaaaaagaggacatatgcaaaaggactgccg---------------gcagaagaaacagcagggaaacaacaggagggggccacgtgtggtgccgtccgcgccc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cctatgttgtaacagaagcaccacccaaaatagaaataaaagtaggaacaaggtggaaaaaattattagtagatacaggggcagataaaactatagtaacatcccatgatatgtc------------agggataccaaagggaaggataatattacagggcatagggggaataatagaaggagaaaaatgggaacaagtacacttgcaata---------------taaagataaaataatcagaggtaccatagtggtgttagctacgagtccggtag------aagtattaggaagagataatatgagagaattgggaataggattaa---ttatggcaaatttagaagaaaagaaaattcccagtacaagagtaagattaaaagagggatgtaagggaccccacatagcgcaat-ggcctttgacgcaagaaaaattagagggattaaaagaaatagtagacagattagagaaggaagggaaagtaggaagagcgcccccacactggacttgtaatacccctatattttgtattaagaagaaatcaggaa---aatggaggatgttaatagattttagagaattaaataagcaaacagaagatttagcagaagcacagttagggttaccgcatccaggaggattacagagaaagaaacatgtaacaatattagatataggagatgcatattttacaataccatt---atatgagccatatagacaatatacatgctttaccatgttaagtccaaataatttaggaccatgtgtaagatattattggaaagtgttaccacaaggatggaaattaagtcctgcagtgtatcaatttacaatgcaaaaaatattaagaggatggatagaagaacaccct---atgatacaatttggaatatacatggatgatatctatatagggagtgatttaggactagaagagcacaggggtatcgtgaacgaactagcatcatatatagcgcaatatggattcatgctgcctgaagataagaggcaagaaggatacccggctaaatggcttggatttgaattgcatccggagaaatggaaatttcaaaaacatacgctcccagagattacagaaggacccataaccttgaataaactacagaaattagtaggagatttagtttgg---agacaatccctaataggaaaaagcatcccaaatatcttaaaattaatggaaggagatagggctttacaaagtgaaagatacatagagagtatacatgta---------------------------------------------------------------------------------------------------------------------------agagaatgggaagcctgtagacaaaagctgaaggaa---atggaaggaaattattatgatgaagagaaggatatctatgggcaactagattgg---ggaaataaagcaatagaatacatagtatttcaagaaaaaggaaaacctt---------------tatgggtaaatgtagtacatagtattaagaatttgagtcaagcccaacaaattatcaaagcagcacaaaaactgacacaagaagtaataataagaacaggcaagatacc---ctggattttgttgccgggaagggaagaagattggatattagagttacaaatgg---gaaacataaattggatgcc------atcattttggtcatgttataaaggctcggtgaggtggaaaaagaggaatgtaatagcggaagtagtc---------ccaggaccaacatattataccgatggagga------aagaaaaatgggcggggaagcctggggtatattacctccacaggtgaaaagtttagaatacatgaagaa---gggacaaatcagcagttagaattgagggccatagaagaggcatgtaaacag---ggaccagaaaaaatgaatatagtaacagatagcaggtatgcatatgaatttatgttgcggaactgggacgaagaagtaataagaaaccctatacaagcgagaatcatggaattagtgcataataaagaaaaaataggggtacattgggtgcctggacacaaggggattcctcaaaatgaagaaatagataggtatatct---------------cagaaatatttttagcaaaagagggaagagggattttacaaaaaagggcagaagatgctggatatgacttaatatgtccacaggagataagcattccggcggggcaagtgaaaaggatagcaattgacttgaaaataaatttgaaaaaggaccagtgggccatgatagggaccaaaagcagttttgcaaataagggagtattcgtacaaggaggtatcatagattcgggata-tcaaggaacaatacaagtagtgatatataatagtaataataaagaagtagtaataccacagggaagaaaatttgcacagttgatcctcatgcctctaatacatgaagagttggagccat---ggggagaaacaagaaaaacagaaagaggggaacaaggatttggatcaacagggat------------------gtattggatagaaaatattcccctagcagaa-gaagagcataa-caaatggcatcaagatgctgtgtccttgcatttagaatttgggattcccaggacagctgcagaagatatagttcaacaatgtgatgtgtgtcaa-----------gaaaataaaatgcctagtacattaagaggcagtaataaaaggggcatagaccattggcaagtagactatacccactatgaagacaagataatattggtctgggtagaaacaaattcaggactaatctatgcagagagggtaaaaggagaaacaggacaagaatttagggtgcaaactatgaaatggtatgcgatgtttgccccgaaatcattgcagtctgataacggaccagcatttgtagcagaatctactcagctcttaatgaaatatttgggcatagaacatactacagggatcccctggaacccacaatctcaagcattagtagagagaacacatcagacgttaaagaatacattagaaaaacttatacctatgtttaacgcgtttgaatcagccctcgcagggaccctcattactctaaatataaaaagaaagggtgggctagggacaagccctatggatatatttatatttaataaggaacaacaaagaatacagcaacaaagtaaatcaaaacaagaaaaaattcgatttt----------------gttattacagaacaagaaaaagagggcatccaggagagtggcaaggaccaacacaggtactttggggcggggacggtg-cgattgtagtgaaagacagaggcacagatagatatctggtgatagctaacaaagatgttaagttcataccgccaccaaaagaaatacaaaaagaataa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Ovine_Lentivirus' -----------------------------------------------------------------------------------------------------------------------------------------------------------tccaacatcacagcagggaaacagcaggagggggccacgtgtggtgccgtccgcgccc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cctatgttgtaacagaagcaccaccaaagatagatataaaggtagggacaaattggaaaaaggtattagtagatactggggcagatagaactatagtaagatatcatgacaattc------------gggaatacccacagggagaataaaactacaagggataggaggaataatagaaggagaaaaatgggataaagtagtaatacaata---------------taaagaaaaaagaatagaagggacaatagtggtactgcccagtagtccagtag------aggtattaggaagggataatatggcaaaattagacataggaataa---ttatggcaaatttagaagaaaagaaaattcccattacacaggtaaaattaaaagaaggctgtaagggtcctcatatagcacaat-ggcctttaactcaagaaaaattagaaggcttaaaagaaatagtggacaagttagaaaaggaaggaaaggtaggtagagcgccgccacattggacatgtaatactcctatattttgcatcaagaaaaaatcaggga---aatggagaatgttaatagattttagggaattaaataagcaaacagaagatttggcggaggcacaattaggtttgccgcatccagggggattacagaaaaagaagcatgtaacaatacttgacataggggatgcatattttacaataccatt---gtatgagccatatagaccatatacatgttttaccatgttaagtccaaataatttgggaccatgtacacggtattattggaaagtactaccacaaggatggaagttgagtccctcagtgtatcaatttacaatgcaagaaatattaagggattggatagcgaaacatcct---atgatacaatttggaatatacatggatgatatttatatagggagtgatttggatataatgaaacacagagagatagtagaagaactagctagctatattgcccagtatggatttatgttaccagaagaaaagagacaagaagggtatccagcaaagtggcttggatttgaattgcacccagagaaatggagatttcagaaacatacacttccagaaataaaggaagggaccataacattaaataaattacaaaaattagtaggagatttagtctgg---agacaatcattaataggaaaaagcatacctaatatactaaagttaatggaaggggatagggcgctccaaagtgaaagaaggatagagctcagacatgta---------------------------------------------------------------------------------------------------------------------------aaggaatgggaggaatgtagaagaaaattagcagaa---atggaaggaaattactatgatgaagagaaggatgtatatggacaaatagattgg---ggagataaggcaatagagtacatagtgtttcaagagagaggaaaacctt---------------tatgggtaaatgtagtacataatattaaaaacctcagtcaatcacagcaaattattaaagcagcacaaaaacttacgcaagaggtaataataaggataggaaaaatacc---atggatactattaccaggaaaggaggaagattggatcttagagttgcaaatag---gaaatataacatggatgcc------ctcattttggtcgtgttatagggggtcaataaggtggaaaaagagaaatgtaataacagaagtagta---------gaaggcccgacatattatacagatggaggt------aagaagaatggaaaaggaagtctaggattcattgcctctacaggcgttaaatttagaaaacacgaagag---ggaacaaatcaacaattagaattaagagcaatagaagaggcgtgcaaacag---ggaccagagaaaatgaatatagtaacagatagcagatatgcatatgaatttatgagaagaaattgggatgaagaagttataaagaacccaatacaggctagaattatgaaattagtgcatgataaggaacagataggggtacattgggtacctggacacaaaggaattcctcaaaatgaagaaatagataaatatattt---------------cagaaatatttttagcaagagaaggaagcggaattcttccaaaaagagcggaagatgcagggtatgatctcatatgtccgcaggaagtgtgtattccagcggggcaagtaagaaaaattccaattaatctaagaataaacttaaaggaggatcagtgggccatggtagggacgaaaagtagttttgcaagcaagggagtatttgtacaagggggaataatagattcaggata-tcaaggcattatacaggtagtagtatataacagcaatgacaaggaagtcattatcccacaagggagaaaatttgcacaattaattctcatgcctttaatacatgaagacctagaagctt---ggggggaaactagaaggacagaaagaggaaaccaaggatttggatcaacgggagc------------------atattggattgaaaatattcccctagcagag-gaagatcacag-taaatggcatcaagatgctgggtcattacacttagactttgggataccccgaactgcagctgaggatattgtacaacaatgtgaagtatgtcaa-----------gaaaataaaatgcccagcacaataaggggaagcaataggagaggaatagatcattggcaagtagactatacacattatgaggacaagataatattagtatgggtagaaacaaattcaggattaatatatgcagaaagagtaaaaggggaaacaggacaagaatttagaatcatgactataaggtggtatggtctgtttgccccaaagtcattgcagtctgacaatggaccagcatttgtagcagagccaacacagctactaatgaaatatttggggataacacacacaacagggataccatggaatccccaatcgcaagcactagtagaaagaactcatcaaactctaaaaaatacaatagaaaaatttgtttctatgtttgcctcatttgattcagcaatagccgcagcattaatcacactaaatataaaaagaaagggtgggctagggacaagccctatggatatattcatatttaataaggaacagcaaagaatacaacagcaatctacaagaaatcaatcaaaatttcgatttt----------------gttattacagagtcaggaaaagaggacacccaggcgagtggctgggaccaacacaggtactctgggaaggggaaggag-caatcgtaataaaagataaaaatctagaaaagtatttagtcatagcaaaaaaggatgttaagttcataccgcaaccaaaagaaatacaaacagaataa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Caprine_Arthritis_Encephalitis_Virus' -----------------------------------------------------------------------------------------------atgtcacaactgtggaaagagaggacatatgcaaaaagaatgcagaggaaagagagacataaggggaaaacagcagggaaacgggaggagggggatacgtgtggtgccgtccgctcct------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cctatggaataacttcagcaccacctatggttcaggtccgcataggttcccagcagaggaacttgttatttgataccggggcggaccgaactatagttagatggcatgagggctc------------gggaaacccagccggaaggataaaactgcaaggaataggaggaatagtagaaggagaaaaatggaataatgtagaattagaata---------------taaaggagaaacaagaaagggaacaatagtagtgttaccacaaagtccagtag------aagtattaggacgagataacatggcccgatttggaataaagataa---taatggcaaatttagaggaaaaaagaatcccaattacaaaagtaaaattgaaagagggatgtacgggtccacatgtcccacaat-ggccattaacagaagagaaattaaaaggtctaacagaaatcatagataaattagtggaagaaggaaaactaggaaaggcacccccacattggacatgtaatactccaatcttttgcataaaaaagaaatcaggga---agtggagaatgttaatagatttcagagaattgaacaaacagacagaagatttaacagaagcgcagttaggactcccgcatccgggaggactacaaaagaaaaaacatgttacaatattggacataggagatgcatattttactatacccct---atatgaaccatatcgagagtacacatgttttactctattaagtcctaataatctaggaccatgtaaaagatactattggaaagtgctgccacaaggttggaaattgagtccatctgtatatcaatttactatgcaggagatcttagaggattggatacagcagcatcca---gaaattcaatttggcatatatatggatgatatttacataggaagtgatttagaaattaaaaagcatagagaaatagtgaaagatttagccaattatattgcccaatatggattcactctgccagaagagaagagacaaaagggatatccagcaaaatggctaggatttgaactacacccgcagacctggaaatttcagaagcatacattacctgaattaacaaagggaacaataacattaaataaattacagaaattagtaggagaattagtatgg---agacaatccataattgggaaaagcattcctaacattctgaaattaatggaaggagatagagaattacaaagtgaaagaaaaattgaagaagtacatgtg---------------------------------------------------------------------------------------------------------------------------aaagaatgggaagcatgtaggaaaaaattagaagaa---atggaaggaaattattataataaagacaaagatgtctatggacaattggcttgg---ggagacaaagctatagaatatatagtgtatcaggagaaagggaaaccat---------------tatgggtaaatgtggttcacaatataaagaacctaagcatcccgcaacaggttattaaagcagcgcaaaaattaacccaagaagtcatcattaggacaggaaaaatacc---atggatattgttgccagggaaagaagaagattggagactagaattgcaattag---ggaacatcacatggatgcc------aaaattttggtcctgttatcgaggacatacaagatggagaaaaagaaatataatagaagaagtagta---------gaagggcctacatattatacagatggagga------aaaaagaataaagtaggaagtctagggttcatagtatcaacaggggaaaaatttagaaagcatgaagag---ggcacaaaccagcaactagaattaagagccatagaggaagctctaaaacaa---gggcctcaaacaatgaatttagtaacagatagtagatatgcatttgaatttttattaagaaattgggatgaagaagtaataaagaatccaattcaagcaagaattatggaaattgcccacaagaaagataggataggagtgcattgggtgccaggacataaagggattccccaaaatgaagaaatagacaaatatattt---------------cggaaatatttcttgcaaaagaaggagaaggaattctcccaaaaagagaagaggatgcagggtatgatttaatatgcccagaagaggttaccatagagccaggacaagtgaaatgcatccccatagagctaagattaaatttaaagaaatcacaatgggctatgattgctacaaaaagcagcatggctgccaaaggagtgttcacacaaggaggaatcatagactcaggata-tcagggacaaatacaggtaataatgtataatagcaataaaatagcagtagtcataccccaagggagaaaatttgcacaattaatattaatggataaaaagcatggaaaattggaaccct---ggggggaaagcagaaaaacagaaaggggagaaaaaggatttgggtctacaggaat------------------gtattggatagaaaatattcctctggcagag-gaagaccacac-aaaatggcatcaagatgcccgatcattgcatctagaatttgaaattccaagaacagcagcagaagacatagtaaatcaatgtgaaatatgcaaa-----------gaagcgaggacacctgcagtaattagaggcggaaacaaaaggggggtaaatcattggcaagtggattatacccattatgaaaatatcatactattagtatgggtagaaacaaattcaggactaatatatgcagaaaaagtaaaaggagaatcagggcaagaattcagaataaaagtgatgcattggtatgcattatttggtccagagtcattgcagtcagacaatggacctgcatttgcagcagagcccacacagctgttaatgcaatacctaggagtaaaacacacaacaggcataccttggaatccacagtctcaggctatagtagaaagggcacatcaactattgaaaagcactttaaagaagttccagccacaatttgtcgctgtagaatcagccatagcagcagccctagtcgccataaatataaaaagaaagggtgggctggggacaagccctatggatatttttatatataataaagaacagaaaagaataaataataaatataataaaaattctcaaaaaattcaattct----------------gttattacagaataaggaaaagaggacat-caggagagtggaaaggaccaacccaggtactgtggaaaggggaaggagccaattgtggtaaaggatatagaaagtgaaaagtatttagtaataccttacaaagatgcaaaattcatcccgccaccaacaaaagaaaaggaataa--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian_Immunodeficiency_Virus_SIVsyk_Syke''s_Monkey' -------------------------------------------------------------------------------------------------------------------------------------------atggggggtctccag-------------------------------gaggcccccagccaacttcccagtgagg---------------------agcgagccatctgctccccctctggagg---------------------------------------acatcgaagatgggccatggctcacatggtcagcacagatgagccaacaagcacaagcgaaggcacagaactctccctcgaagaaaccccccaccaacagggaagtgctctcgccgaaggagagcagtgggaaggaggagaccaag---------------------------------------------------------agtctctatccctctctcagctctctctttggagaagaccaatgatagaagtagatgtagaaggtgacctggtgcaaatgttagtagatacaggggcagatgatactataattagagaagaaga------tattcaatt---acaccaaccatggtcaccaaaaatagtaggaggattaggaggaaacattacagttaggcaatatagaaatattagattcactgttgttaaaccctcaggaaaaagaaagcaagtagaggggactcttttagtgggtc---ctacgccagtaa------atatattaggaaggaatatacttaccaaattgggagtcaaattag---taatggttc---------aaacagcattagagccagtcaaagtaagtctgaaaccagacaaagaattgccccggctaaaacaat-ggccattatcggtagagaaattagaggccctcaaggcaatagtagaagacatgctcaaggcaggacaattggagaaagctagtcctaccaatccttataataccccagtatttgtaattaggaaaaaggacaaaaagaaatggaggatgctcattgattttagaaaattaaatgaggccacacaagattttttcgaggtacaattgggaataccccacccaggaggactaaaacggcaaaaac---taacaattatagatttaaaagatgcatattactcagtccccct---ggacaaagagtttaggccatacacggcatttacagtgccaagcataaataatgcctccccgggagaaagatatcaatttacagtgttaccacagggatggaaaggatctcccactatcttccaaagcacaataaatcagatactacagccatttagaaagaagtattca---gatctcactctaatacagtacatggatgacttattgattggcactgatagatcagagaaggcacatcaggagatagtacaacaaatagtgacagcactattaaaagtgggatttaaggtcccaaaagaaaaatggcaggaccaatatccaatgcagtggttaggttacactcttcatccagacaagtggcagttgcagaaaatagaactccctaatataga---tgacgaaatcacagtgaatcagttacagaaattgataggagtacttaattgggcaagccagatttattcaggaattaagacaaaagagctctgtaagtgtatcagaggaactaaacaattaacagaagtactcacacttacagaagcagctgag---------------------------------------------------------------------------------------------------------------------------gcagaattagaagagaatagacaaatcttaaaggaagaacaggcagggtcttattatgaccctaaaaaacctttagaagcacacatcactaaactagggtcccagcaatggggatacatgattaagcaagagcaaaaaggcccac------ccctaataacaggaaagacagcaaaaacctttgcagcacatagtaatgactatcaatctcttgctcaattgttaaataaaatagggatccaatcactatggtattggggaaaggtacc---aacattccatctcccagtaaaaagagaggaatgggaaaaatggtggacagactattggcaagccacatgggtacc---agaagtcaaattcataagtaccccgccattggttaggtggtact---ataacttggtaccagaacccata------ccagaagcagtaaccttctacgtagatggagcagctaatagagacagcaagacaggaaatgcaggatatgtagcaagtgatgggacacagagagtacagtatctggagcaaacaacaaaccaacaggcagaattagagggcttgctcatggcattgcaggac---tcaaaagacaaagtaaatatagtagtagattcacaatactc------ttatggcattcttatgacatgccccactaacacagaacacccaatagtggagcagataatacaagaggccataaaaaaggaagccatatatgtgacatgggtcccagcccataaaggaataggaggaaatgaagctgttgataaactagtca---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtaaa-ggaataag------aaaaat------------------cctattcctagaaagaattccccaagcacag-gaagatcatga-aaggtaccactcaaatatggagtatcttaggcaggagtttcatctaccccgacaggtagcaaaagcaattatacaacaatgtccaaaatgtcaaaa---------tagaggagaaccaaaacatgggcaagtagatgtagatatatata--------attggcagatggactgtactcatgaggaaggcaaagtaatctgtgtagcagtaaacacagctagtggatatatagaaaccaagatcttaaaaagggaaacgggggatgaaacagcattgtttctcatgcaaatagccagtagatggccaataaaacagatacacactgataatggaccaaactttgtcagtgacaagttcaaagcagcatgttggtggtgtggcatagaacacactacaggtattccatacaacccacaaagccagggaatagtagagtccaaaaataggtatttaaaagaagctatctcacaaattagagacgacgtcacacatttgcaaacagcagtggcaatggcaaccttcatcttaaattttaaaagaaagggaggaataggggggatatcaccaggagaaaggtacattaatatgctatatacagaactacaattacaaca---aaatac---aacatcaccaaaattttcgaa----ttttagggtttactaccgccaggggaagaac---gag---------tggaagggaccagctcgtctactttggaaaggtgaaggtg----cagtagtggtgcaaacagaggagggagacatttttgcagtaccaagaagaaaggcaaaaataattacagaccatg---gaga------------------------aagaatggatagtggttcccacgtggagaatgaccccaagacagattga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVtal_Gabon_Talapoin' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gttcatggaacagatcccagaggcccaa-gaggagcatga-gagatatcataacaattggagggatctaaaagccaggttcaaattacccaccatagtggcaaaagctattatagaaagttgccccaagtgtcaagt---------tcatggggaacctaggacaggacaaaccaatgcagatgtaggga--------catggcaaatggattgcacccacttggaaggacaggtgatctgtgtagcagtgcatgtagccagtggctacatagagacaaagatactgcccagggagacgggtcgggaaaccgccctgtttcttttacagatagcaggcagatggccaataagtcacttacacacagataatggccccaactttgtctcgcaggaaatggccgccatggtatggtggctaaagatagagcacacaacgggggtaccatataaccctcagtctcagggcaatgtagaaaataaaaataagcaattgaaaaagaccattcaacaaattagggatgaggtgcagtacctaagctc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVtal_Angolan_Talapoin' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tacaattatacaatcgggaga------aatagaatt---agaaggagtaccccaccaaaaaacagtaggaggattggcaggatacattcaagtacaaagttatagtgcagtagaaatccaatg---------------ggaagacaagagggcaaaagacacagtattagta?gac---caacacccatta------atatactagggagaaatttcttcgcgaaatttggagtaacattaa---acatggt---------tagcacagaaataccagtgataaaagtgaagttaaaggagggaaaagaaccccctaggatcaaacagt-ggcccctatcgagagaaaaaatagaagggctacaggccatcatcggtgacatggtaaaggcaggacagctggaggaaataggaccagacaatccatacaattcaccagtgtttgccataagaaagaaggacaaaacacaatggagaatgctcatagatttcagagcgctaaaccaagccacacaggactttgcggaagtccaacaagggataccacacccctctgggctcc?gcaaatgaaacagataacagtgctagacatgaag---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian_Immunodeficiency_Virus_SIVgsn_Greater_Spot_Nosed_Monkey' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttaga------ccttggccgggggcg---------acgagcccccaggaactttccagtaact------------------tccctgctgccatcagccccggcggaggaggtggaaccccagcagctcaacct-------------------------------------------------------------------------------------------------------gtctccgccggtgggggagcc-----ccagaacaaggagcagaaggcagaaaagaggaac---------------------------------------------------------actctttatccctccctgtcatctctctttggggaagaccaatgagagaagtctccatggggggacaagtggtgtccatgttattagacacaggggcggacgataccattgtccaagaatcagc------aattgaatt---agacacaccatggacaccaaaaacggtaggggggatagggggtttaatacaagtaaaggaacatagacatgtagaagtgatctt---------------taatgaaaaaagaatcaaagccactgtacttgtagggc---ccacaccagtga------atatattgggaagaaattgtttaagcaagttaggagtaaccttaa---acatggt---------gcagcagaaactagagcccgtagaagtgcacctaaaatcaggaaaagaaggaccaaagattaaacaat-ggcccttgtctaaggaaaagatagaggccttaacccaaataacacaagaaatgctcaagttaggccaattggaaaagatagggccagaaaatccatacaactcgccagtctttgccataaaaaagaaagacaaatcacaatggagaatgttaatagatttcaggaaattgaatgaggctacgcaagacttggctgaggtccagttggggattccgcacccagcaggactagaacaaaaagagcacgtaactataatagatatgaaagacgcttattacagtgtaccatt---gtatgaagaattcagaaagtacactgcattttcagtaccatcagtaaacaatcagaccccagctgagaggtatcagttcaaagttttacctcagggttggaaggcgtctccaaccatttttcaggccactgtagcttccttgttatatcagattagagaccaggagcca---gatgtggtaataatacagtacatggatgacttgttgataggatcagataggaaattggcagagcataggcaagtagtgcacaaaataagaaatttgttgacgtcctataacatccagacccccgaggccaaacaccaacaagattatccagtcagatggctcgggtatgagttgcaccctaagggatggaggctccaaccagtggagctcccagatcaaga------catctggacagtaaatgacatccaaaaattggtagggaagctcaattgggtatcgcaaatacatcctggcataaggacaaaacagttatgcagatgtattagaggagccaaagggctaacagaacaggtggagctcactgaggaagcacaa---------------------------------------------------------------------------------------------------------------------------atagagttagcagaaaacagagagattctaaaacaatcctcagagggcagctactacgacgcagaaaagccacttgtggtagaaattacctccctaggagaacagcaatggggatacatgttcagtcaggacagcaaga------------tgctaagatcaggcaaatttgcaaaaaccagaactgcacatataaactcttatcagcaattggcagatgctatgaccaaagtaggtagggaaagtcaggttacttggggaaaagtacctgacaaattcaggatcccagtagtcaaggagcaatgggatacgtggtggatgaactattggcaggcaacatggattcc---caccatagaagcagtacacacaccacatttgttgagacagtggt---acaccctagtctcggaaccccta------gaaaatgcagtcacctattatgtagacggggcagcaaataggacctctaaattaggaaaagctggctatgtgaccaatacaggaaaatatagagccatagaactagaaggaactacaaatcaacaagcagaactccaggcagttcttttggcattaaaagaa---ggaccaccaagaatgaacttggtcacagattcccaatacgt------aatggggatcttacaaagccaaccagaagtatccacctctcccttagtggaacaaatcatacaagaactgttagggaaagaggccgtctacttgagttgggttccagcacacaaagggataggaggaaacacagaggtagacaaattagtca---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcaga-gggatccg------ccaagt------------------actcttcatggagaacatagagcccgcagta-gaggaccatga-aaaatatcatagtaattggaagtatttaagggatcaatacaaaatcccggcactattggctaaagaaatagtaaacaagtgctccaaatgtcagat---------acatggggaaccaaaacatgggcaagtaaatgcagaattaggca--------tatggcaaatggactgcacacatctggaaggcaaagttatcttagtggcagtccacgtagccagtgggtatgtttgggctaggataataccccaagaaacaggcagacaaactgcattaaagctattagaattagcagcaacatggccagtaactcacctacatacagataatggccccaatttcatctctaaggaactggaggcagcttgttggtgggcaaacatacaacacagtacaggggtgccatacaacccgcaaagtcaaggggtagtagaaaacatgaacaaacaactcaaggaaacaatccaaaagattagagatgaggtcacatacttagaaacagcagtagcacaagcatgctacattcataattttaaaagaaagggaggaataggggatatgtgccctacagagaggttagtgaacatgatccacacagaattagaaacacaacacttaaacac---acaaagttccaaatttcaaaa----atttcgggtttattacaggcaaggagctaatcctcat---------tggcaaggaccagcagtacttctctggaagggtgaaggag----cagtagtggtccaaacccaagcaggtgagatcatcacagtccctagaaggaaagcaaagatcatcaagccatatggagaggcaaaggcaga---------------agatgtgggtagtgcagcccatacaagtaatgacagagaggaaggtagaatggctgattag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVmus_Mustached_Guenon' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttaggggatcccttcggcctccagaa---------aaggaggccgaggaacttcccccagacc------------------tctctcttgccaactgctccgccagaacaggagggg---gaattggtcaatct-------------------------------------------------------------------------------------------------------ctctccagcagtggg-----------------tcccggggaggggaaacaggacaggaag---------------------------------------------------------agtctctatccttccctgtcatccctctttcaggacgaccagtcagaccagtagagatagaagggcaggtggtgtcaatgctgctcgacaccggagcagatgacaccataatccaggatgccca------tatacacct---agaaggaccatggaatcccaaatcagtagggggaatagggggaaacatatcagtcaaagaatataggggagtacaggtttgttt---------------caatggaaaaactattagggcaacagtattagtagggc---caacacctataa------atataatggggagaaactgtttaagcaaatttggcattactctaa---acatgat---------acagggaaaattagaaccaataaaagtgaccctaaaagaaggagcaaaagggccaatggtcaagcaat-ggcctttgacccaggaaaagatcagggccttggaggacataacccagcagatgctaaaagtaggccaaatagaggaaataggaccagagaatccttataattctccatgctttgcaattaggaaaaaggacaaatctaagtggagaatgctaatagatttcaggcaattaaatgaggctacccaagaactcgcagaagttcaactaggaatcccacatccagcaggattaatagagcatgagcacgttacaatagtggatatcaaggacgccttttacagtgtccccct---agatccagactttaggaagtacacagccttttcgctgcctcaggtaaacaacttgggaccagcaagaagatatcaattcaaagtgctaccacagggctggaaagggtctcctaccatcttccagttcacagcagccaaactcttagaagagattaagaaagcaaaccca---gatgtcactctcatccaatacatggatgacctcctgataggatccaacagagaattatcaagccacaggaaagtagtagcacagattagaaacatgctcttaaagcttgggattcaaacccctcaagaaaaatttcaggaagactacccagtccaatggttagggtatgagctacacccccggggctggaaaatacagcccgtagcattgccacaacaaga------agtttggacagttaatgatgtgcaaaagctggtagggaaattaaattgggcagcacaagcatacccaggtatcaagacaaagcaattatgcaaatgcatcaggggagtaaaatctctgactgaagaggtccagttgacagaggaagcacag---------------------------------------------------------------------------------------------------------------------------gcagaattggcagaaaatcaggagatccttcaacagacagtccagggggcatactatgacccagaacagccattagtggcagaaattgtctcactaggagactcacagtggggatataacttcacccagagcaaggggg------------tattaaggacaggaaaatttgccaaagtaaggtcagtacacactaatagctatcagcaattggcagacgcaatggccaaaataggaagagaaagcctagtcatttgggggaagccccctgacaaggtcagaatcccagtgatcaaagaacagtgggaccagtggtggatagcacactggcaggtctcgtggatacc---taccatagaagcagtgcataccacccacctgttaaaacagtggt---tcacattggtaccagaaccatta------aaagaagctcccacatattatgtggatggagcagcaaatagggtatccaaattgggaaaagcaggatacgtcacaaacacagggaaagaaaaggtaattagcctagaaagtactaccaaccagaaagcagaattggaggcagtcttattggccttaaaagaa---gggcctcctaggatgaatttagtcacagattctcagtatgt------cttagggatagtagcttctcagccacaagaatccacttcaccattagtagagcaaataatacaggagctactgtcaaaagaagccatatacttatcatgggtgccagcccataagggtataggaggaaatgaggaagtggacaaattagtaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------atagt-ggaatcag------gcaagt------------------cctattcatggaacagatagaacctgcaaag-gaagatcatga-aaaatatcacagtaattggaagtacctcagggataaataccaaatcccagctttgttagccaaagaaatagtaaaccattgtccaaaatgccagac---------acatggagaaccaaaaacagggcaagtcaatgcagagatagggg--------tatggcaaatggattgcacccacctggagggaaaaatcattctagtagcagtccatgtggctagtgggtacatgtgggcaaagatattgccaagagaaacagggaggcagacagctttaggcctactggagttagcatcactatggcctgcgacacaaatccatacagataatggggctaacttcatcagtgcagaattcgaagcagcatgctggtgggccagcatagaacataccacaggggtaccatataaccctcagagtcaaggagtggtagaaaacaaaaacaaacagttaaaagaagccatacacaaaatcagggaagaggtcacttatttggaaacagcagtagcacaagcagtcttcattttaaattttaaaaagaagggaggagtgggggacctatcaaatgctgagaggataatcaacatgctacacacagaactagaactacaacacttacaaca---acaaaaatacaaatttcaaaa----ttttcgggtttattataggacaggttctgatccgtct---------tggaagggacccgccgtcttactgtggagaggtgaaggag----cagtagtcatcaaaacagactcaggagaggtaatcacagttcctagaagaaaggcaaaaataatcaaaccctatggcg------ccaagga---------------agatgtgggtagtaagtccgatacaggagacctcagaaaggaagatagattggataattag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVmon_Mona_Monkey' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------atgttattggacacgggRgcggacgataccatcgtccaagaRcaaga------cataaatct---aggagaaaattggacacccaaaatggtagggggaataggaggcttaatacaggttaagcaattcaaaggggtaacggtatcctt---------------ccagggtaaaacagtgagagcWacagttttgctgggac---cRaccccaatta------atattttggggagaaacgtcctctcaaggatggggataaccctga---acatgYcccaggg---aatcgcccaatccccatccttgacagtgacccttaaaccaggaaaagatgggccaaaattgaaacaat-ggcccctctctaaagaaaagatagaggctctcaccaccattRcccgggagatgatagaattaggccaattggaagaagcagagccaaccaatccatataattctccttgcttcgcgataaggaaaaaggataaaaccaaatggaggatgctcatagatttcagggaattaaacaaagcaacacaagatttctttgaggtacaattaggaattccacacccggctggactccagaacatggcaaatataactatagtggacatgaaagatgccttttacagcatccctct---ggatgaaaattttaggaaatatactgcattttcaataccttcagtaaataatgcagaaccagccgtgagatatcagttcagagtgttgccccagggRtggaaaggatccccaacaatatttcagtactcagcatcagagctgctRaaagRaatcaggagaaaatatcca---gaggtcaccctcatccagtacatggatgatctactcataggttcagaccattccctacctgaacacaggaagatagtaacagccattagaacgctRctatcagaaaaggggattcaaacaccaatagagaaatatcaggacaagtacccattgcagtggttggggtatgaactccaccccacccattggacagtccaaaagatagaactgccagaacaaga------ccagtggacagtcaatgggatccaaaaattagtagggaaattaaactgggcagcgcagatctacccaggaatcaagacaaagcatctatgcaRatgtatccgRgggRtaaaagccctaacggacatagtggagctatcagacttagcccaa---------------------------------------------------------------------------------------------------------------------------gcagaattagcagaaaatagggaaattctaagtcaacagtcgactgggggatattacgacccccagctcgacttgaaggtagagattacctccctggYagaaggacagtgggggtacRggtatttccaggaaRataggg------------ttctaaagacaggcaaattcgcaaagattaaaaatgcccactccaacacataccagcaattggcagatgctgtaaccaaactagggaaggaggccttggtcatttggggaaagctacc---aatatttagattaccagtaaacaaagaacagtgggacacatggtgggccgacaattggcaagtcacttggatacc---agagatagagccagtacactctccacacctgcttagacaatggt---acaccttagtgcaaRatcccatt------gaacacgctcccacctactatgtagatggggcggctaacagagcatcaaaagaagggaaggcaggatatgtcaccagtacaggccaaagaaaggtaattccattagagcagactaccaaccagaaggctgaactagaagcagtgcttttagcattgcaaaat---gggcccgctagtatgaatatagtaacagactcacagtatgt------catgggaatcctagcatcaaagccagaggtctcggagtccccaatagtagagaaaatcatccagcagctcctaggaaaaaagcaggtatatttgtcatgggtcccggcccacaaaggcatagggggaaatgaagaagtRgacaaattagtaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gYcaa-gggatcag------acaggt------------------cctcttcatggagaacattgaaccRgcccga-gaggatcatga-aaaatatcacagcaattggaaatatctcagggatacttatggcattccaacactcctagccaaagagatagtcaaccattgccccaagtgtcacac---------acaaggagaacccaaacatggacaggtagaYtcagatataggga--------tatggcaaatggattgcactcattatgaaggaagtatcatcctagtagccgttcatgtagctagtggctacgtttgggccaaaattcttcccagagaaacagggaaagaaacaggcattgccctgttggaacttgcagcgacatggccaatacatcatgtacacactgacaatggaccaaatttcaccagtcaggaatttgcagcYgctgcatggtgggcaaacatagaacacagtactggagtgccctacaacccacaaagtcaaggtgtagtagaaaacatgaataagcaaatcaaaaccacattagggaaaatcagggatgaagttcagttcctctctacagcactggcacaaacgctctacattctaaattttaaaagaaRgggaggaataggggatatcagtccaatagagaggttagtcaacatgattcatacagatttagaactacaacactcaaacaa---ccaaattacaaaattttcgaa----atttcgggtttatttcagaacaggcgctgatccttcg---------tggaagggaccagcacatcttctctggaagggggaaggag----ctttggtgattaagacagatcaaggtgaggtaataacagtaccacgcaggaaggcaaagatcattcgcccttatggctccaagga---------------------agatgtgggtagtaagcccagtgcacatcagatcagagaggtggatggaatggctgattag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVden_Dent''s_Mona' ----------------------------------------------------------------------------------------------------------------------------------atggagcccagtgagggtccagcagcaaccacagtacccacaaaattttcaagaggggggaaacagacaatcttgtcaggaag-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------acaagaggcagaacaagcagtcccatcaggaggacgaggagacaacgagggag---------------------------------------------------------agtctttatccttcgttgaagtctctctttggagacgaccaatagggcagatctgggttcagggacaaagggtagaggtccttatagatacaggggcagatgacaccattatagcagaacaaga------tataaatttgggaacagagggatggatcccaaaaacagtagggggaataggaggatatattaatgttcaggcatacccagggatagaaattaagct---------------tatggacaaagtagcggtagacacagtattagtaggac---ctacacccataa------acatcttaggaagaaactatcttagtaagttaggagtaacactaa---acatggcagtaca---gcaaatgcggcctcaagtcaccccagtaaaattaaaaccaggatttgatggccctagaataaaacaat-ggcctttaactacagagaaattaaaagctttacaacagatagtgacacagatggaaaaggagggaaggttggaaaaggcgccacccaccaacccttacaatacacctgtgtttgtaattccaaagaaagacaaaacacaatataggatgttaatagatttcaggaaattaaatgaggccacccaggacttctgggaagtacaattaggtataccacatcctgcaggattacaacagaaggaacacatcactgtgttagacttgaaagatgcatattatagtgtgccttt---ggatccagattttgcacaatacacagcatttacagtgccgtccattaacaatgaaggaccaggacaaaggtacattttcaaagtcttaccacaaggatgggtaggatcgcctaccatttttcaggccacagcagataaaatgcttagccaatttaggaaggcccatcct---gatgtgattttaatccagtatatggatgatctcttggtagcatcagatagatccctagaacagcacaggaaaatggttaaggaactaagagacttcttggcagtatggggctttgagacccctgatgccaaatttcaagaaacaccacccatacaatggatggggtatgaattacaccccaaacactggcaaatacagaaaatagacctgccattgccagaggatgggcagtggacggtgaatgcaattcagaagctagtaggagtattgaattgggcaagtcagttgtactcaggaataaagacaaaagaattatgtaagagcattagaggagtaaaagacttaggagaaaccatttcactcacggagggagcagag---------------------------------------------------------------------------------------------------------------------------gcagagcttaaagaagcacaagaaatattaaaagaaagtatttcaggaagttattataggccagagaaacctttgatagcagagatctctaaattaggagaaaatcagtggggatatacaatcaaacaggaaaaacatc------------tactcaaaacaggcaaataccataaggacaaaggaagccattataacccatatcaacaattagccaaagtgatggcaaaaataggaagagaagccttagtaatctggggcagacttcc---tactttcagactcccagtaagcaaggtagattgggatgcatggtggtcagaatattggcaagttaattggatacc---tgactgggaaatggtatcaactccaccccttctaagaaattttt---ataatttggtatcagagcccata------gacaaagcgcccacctattatacagatggagcagcaaatagacagactaaacaaggaagagcaggatatgtggccaccaatggcaagcaaaaggtagtaaccttggaagaaacaaccaatcaaaaggcagaattaataggagtcttaatggccttacaagat---agtcccaacaaggtcaacatagtcactgattcacaatatgc------cctaggcatcatagcaggtacacccactacatctgaacatcagatagtggaacagatcatacaagctatgcaaggcaaggaagaaatatacatcacctgggttccagcccacaaaggaataggaggcaatacagaaatagacaagctagtta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtaaa-gggatcag------acaaat------------------cctattcttagaacaaattccacaagctcaa-gaagaacatga-taaataccatagcaattggaaagagatcagagataagtatggcctaccaactatggtagctaaggaaatcattaatgtctgtccaaaatgtcagac---------acatggggaaccaatcagaggacaggtggatgcctctctaggaa--------catggcagatggattgcacccacttagagaataaagtaataatagtagcagtaaatgcagccagtgggtacctagagacaaaaattttgccagcggagacaggcaaagaaacagcactatttttactgcagatagctgctagatggccaatcaccaaattacacacagacaatggaccaaattttatcagtcaagccatgcaggcagcatgttggtgggcaaatatcaaacacaccacaggagttccatataatccacaaagtcagggtattgtagaaaataagaacaagcaattaaaggaagttatagcactagtaagggaagatgcagaaagattagaaacagcactagcaatggcaaccctcattcttaattttaaaagaaggggaggactaggggatatgacagcagcagaaagatacattaacatgctaaatacacatttagaaatacaacataccaaaca---------accaaaattttcgaa----ttttaaggtctattacagagagggagctaatccgcaa---------tggcaaggaccagctgagctgctttggaaaggtgaaggag----cagttgtcatcaagacacaggcaggagacatcttcccggtacctagaagaaaggcaaaaatcatcaagccatataatgcagaatctaggaagggagaacagaacaaaggaatggatagtgagactgacatataa--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian_Immunodeficiency_Virus_SIVdeb_De_Brazza''s_Monkey' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggaaactt---ccctgggggag---------gagagcccccaggaatttcatagagcag------------------------------------------------------------------------------------------------------------------------caacaccagacatggggcatagggaagtacataccggagggaggggacgagatcttctcctcttccagggtaccggaacagaaaccccagcagcaggaggagacgaggagagggaaatac---------------------------------------------------ccagatttatcggacttgaagtccctctttggagaagaccagtaaccacaatagagatagagggaagaagggtgcaggttctattagatacaggggcagatgatactataattcatgagaaaga------tattcaact---tacctcaccctttgtcccaaaaacagtagggggtctgggaggttttataaatgtaagatgttatccagggatagaaatccaatg---------------tcaaggtaaggtagcagtaggggaagtcctagtgggag---agacacccatta------atattttagggaggaatttcttagcacccctaggcttctcgataa---acatgct---------agagagtcagattcaatataccccagtgaaattaaaagaagggaagtcaggaccaaaagtcaaacaatgggcctctagccagggaaaagatagaggctctcagggaaatagtgggaaagatggtggaggaaggccaa-tggctcctgcctcacccaccaatccatataactcacctgtgtttgccattaaaaagaaagacaagaacaaatggagaatgttaatagatcttagagaattgaacaaggcaacacaaccagtttgggaggtccagacagggatcccgcacccagcaggtctgccacagaaaaggcagataacagttttggacatagcagatgcatactattctataccatt---agatccatcctttgctcagtatacggcatttactataccatcagttaataacacagcccctggagagaggtatgagttcagggtgctgccacaaggatggagtgcatcaccagctatattccaacacactgttcatcgggtattggaaggatttagaaagaaataccca---gatgtactcatagtccagtacatggatgacctattggtagggtcagacagaacagaagaacaacacagactagtagtcaaaacactaagagattatctcctagagagggggttaaaaacacccccagagaaatttcaggcagagcccccctatcagtggatgggatatgtccttcatccaaaaaagtggactacccaaccaattcagatccctgaggaaga------ggaatggactgttaataaaatacagaaactagtaggaatcttgaattgggcaagccaaatatattcagggataaaaacaaaacacctgtgcaagagtattagaggggttccagggttaacagaccctgtaaagttaacagaagaggcacag---------------------------------------------------------------------------------------------------------------------------gccgagctggaagaagccagacagatcttaaaagaacaagtgtcagggacctattacaaagaacaggaggacctcatagcagacattactaagctttcagaagggcaatggggatacaccattagacagtcaaagggaa------------tcctgaaaacaggcaaatatgcaaaggcaaaaggggcacatttcaatgattttcatcagatagcaaaattgatgatgaaggtaggaacagaaagcatagtaacatgggggaggttacc---cacatttaggttacctgtccagaagcaggactgggatggatggtggcatgagcattggcaagccacttggatccc---agaatgggaggcggtacacactcctcccctagtcagattatggt---attccttggtttcagaacctata------aaagaagcagatacatattatgtggatggagcagctaacagagaatccaaggaagggaaagcagggtacatttcagagagaggaaaacagagtgtaaaggccttagaaaacactaccaatcaaaaggcagaattaacagcagttctcatggccttagaagat---agtggggaaaaggtgaacatagtaacggactcccagtatgt------actaaacatactaacagaacaccccacaaccactgaacatgaattagtagagaaaataattcaacaactacagaagaaacaggaagtatatcttcagtgggtgccagctcataaaggtctgggaggtaatgaacaaatagataaattagtta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtaag-ggaattag------aaagat------------------cctttttctagaaagagtagaagaggctcag-gaagatcacga-taaataccacagtaattggaaacagctaagggaggagtttaatctccccaccttagttgcaaagcaaataattaatcaatgtcccaaatgtcaaat---------acatggggaacccaaacatggacaagtcaatgcagacttgggta--------tttggcaaatggactgcacacatttagaaggaaaagtcataatagtagcagttcatgtggctagtggatttacagaaacccaggtgttaaaggaggaaacaggaaaacagacagctttattcctgttacaattaggggctaggtggcccatacaacaagttcacacagacaatggacccaactttattagtcaggcatttgctgccgcctgttggtggttagggatagagcacaccacaggggttccatacaacccacagagtcaaggagtagtagaaaacaaaaatagacaattaaaggatacaatcacacaagttagggaagatgcacaacgattggaaacagcagtagctatggctactcacattcttaattttaaaagaaggggaggaataggggatatgaccccttcagaaaggatagtcaatatgattaatacagaactagaaataaaatacctacaaca---aaaaatttcaaaattttcagg----attcaaagtctactacagagaaggagctgatcccagt---------tggaaaggcccagcaacactcctgtggaaaggagaaggag----cagtggtaatcaaattggacacaggggatttaaaagtagttcccagaagaaaagcaaaagtaataaaggactatg---gaaa------------------------agatgtgggtagtaagattgacccacaagatacccatgaataa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVrcm_Red_Capped_Mangabey' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggaatgct---ccctggaagca---------ggggaaaccgaggaaccttcccttgact------------------tccttgagacctactgctccagggagagaggaaggatggaatccc------------------------------------------------------cagtacgatccagcagaagagatgctcaggaa-------------------------atacctagcattggggagaca-----gcacaaacaggagcagaggaaagagaacaaggagaaagtggggagagcctacgag------------------------------------gatgcgttgtcctccctcaattctctctttggaagcgacctgtaacatgggtagaaatagaggggcaaaaggtggaggccttattagatacaggagcagatggtacagttatacaaaa------------tttagattt---aggagaaaattggaagccaaaaattataggaggaatagggggatatataaatgttaaacaatttaaccattgtaaaataactat---------------agcagggaagactacacatgctcatgtattggtaggac---caacaccagtaa------atataattggcaggaatgtgttgagcaaattaggagcctctctaa---attttcc---------aataagtaaagcagaaacaataaaggtagaattaaagccaggacaagatgggcctagagtaaaacaat-ggcctttgagtaaagagaaaattgaagctttaacagagatttgtaatgccatggaaaaggagggaaaaatttctagaataggaccagaaaatccttacaatactccaatattttgtatcaaaaagaaagattccacaaaatggagaaagctagtagatttcagagaattgaataaaagaacacaagatttctttgaggtacagctgggaatcccgcatccaggaggattaaaacaatgcaggcaaattacagtcttagatattggggatgcgtatttttcatgccccct---atatgagccatttagaaagtacactgctttcacgatactagctattaataatcaaggacctggcattagatatcaatataatgtgttgccccagggatggaagggatctccagctatatttcaaacaacagctaacaaaattttagaaccatttaggaaagagaatcca---gatgtagtcatctatcagtatatggatgatttgtttgtagggtcagataggacagcacatgaacatagtcagatgatcaaaaggctcagagagcatctgctgacctggggttttgagactccagataagaaatttcaggacaagcctccctttgaatggatgggctatgtgctccatccagacaaatggacagtacaagagatcaagttactagaaaaaga------agaatggacagtaaatgatatacagaaattggtagggaaattaaattgggcaagtcagatatattcaggaataaagacaaaggagttatgcaaactaataaggggagttaaggcattggatgacaaggtagaatttacaagagaagcagaa---------------------------------------------------------------------------------------------------------------------------ttagaatatgaagaaaacaaagctgtcctgaaggagaaaatacatggggtttattataacccagaaaaaccattaatagctaaagttcagaaattagaaggagggcaatggagctaccagatagagcagggagactcaaa---ac------ctctaaagacagggaagtatgcaaaacaaaagacagcacatacaaatgaaattagaatgctggcaggcttagtacagaaaatatgcaaagaagctatagtaatttggggaaagcttcc---aaaatttgagctgccaatagaaagagaagtatgggaacagtggtggtcggattactggcaggtttcctggattcc---tgaatgggaatttgttagtactccaccactaataaggctatggt---acaatctagtaaaggatcctata------ccaggagaagaagtctattatgtagatggggcagcaaataggaatagtaagttgggaaaggcaggatatgtaacagataggggaaaagaaaaggtaaaagaattagaaaatactaccaatcaaaaagcagagttaggagcagtattactggccttaaaagac---tcaggaaaaagggtaaacatagtaacagattctcgacatgt------gtttggcatattagcaggaagtccagacacaagtgagagccccctagtacaacagattatagaacaaatgatagggaaggaagaagtgtacctctcctgggtaccggcacataaaggcattgggggaaatgagcaggtagataaattagtga---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtcag-ggaattag------acaggt------------------actattcctagacgggataggaaaagcacag-gaagaacatga-aaaatatcatagcaattggagagcaatggcagaagaatttcaaatacctcaaatagtagcaaaagaaatagtagcccaatgccccaagtgtcaggt---------aaaaggagaagcagtacatggacaggtagatgctagtccaggta--------cttggcaaatggattgcacacatctagaaggaaaaatcatcatagtagcagtccatgtagccagtggatacatagaagcagaagtaataccagcagagacaggaaaagagacagctcatttcctgttaaaattagcagccagatggccagtgaaacatttacacacagacaatggaacaaactttacaagtgcagcagtgcaagcagactgttggtgggctcaaatagagcacacctttggagtaccctacaatcctcaaagccaaggagtggtagaatcaatgaatcatcaattgaagataataatagggcaaattagagatcaggcagaaaagttagagacagcagttcaaatggcagtgctcattcacaattttaaaagaaaaggggggattggggggtacagtgcaggagaaaggataatagacataatagcatcagacttacaaacaaccaaattacaaaa---ccaaatttcaaaaattcaaaa----ttttcgggtttatttcagagaaggaagggatcagcag---------tggaagggaccagctaaactcatctgggaaggagaagggg----ctgtcgtgatccag---gatcaagaggatctaaaggtagtccctagaagaaagtgtaagatcataaaagattatggcagaaa------------------------agaggtggatagagagaccaatatggaaggtagacaggaggaaagttga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVdrl_Drill' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggaatact---ccctggggcag---------cgggaaacccaggaattttcctcaggcc------------------tcgctgaccccatcagctcctccattgccaggatacctc------------------------------------------------------------caggaggatccggccgagaggatgctccaaaa-------------------------gtacatggagcagggagctca-----------gcagaagagacaacagagacaacaacagcagaagaggggcccctacgag------------------------------------gaggcttacaactccctcagttctctcttcggctcagaccaactacaatagtagaggtagaagggcaaaaggtagaggctttactagacacaggagcagatgatacagtaattcaagg------------attggaatt---aacaggaaaatggaagccacagattataggaggaattggaggaactattaatgtgagacaatattttaattgtgaaattaagat---------------agcagggaaaattactcatgcttcggtgttggtaggcc---ctacccctgtaa------atattataggtagaaatgtactctgtaaattaggagctactctta---attttcc---------tgttagtcaagtagaaccagtaaaagtaacactaaaaccaggaatggatggaccaaagataaaacaat-ggcccctctccaaggagaaaattgaagccttgaaagaaatatgtgagcaaatggagaaggaaggtcaaataagtagaataggtccagaaaatccatacaacacaccggtgttttgcattaagaagaaagatggtaccaaatggagaaaattagtagatttcaggcaattaaataaggcaacacaggacttctttgaggtgcagttggggataccacacccgggaggcttaaaagcatgcgaacagatcactgtactggatgtaggtgatgcctatttctcatgccctct---ggatccggactttagaaagtacactgcattcaccattccatcggtgaataatcagggcccaggaatcaggtatcagtataatgtcctcccacagggatggaaaggctcacctgcaatcttccaagctacagctgacaagatcttacagccattcagagagaaaaatcca---gatgtgattatatatcagtacatggatgatctgtttgtaggaagtgatagaccaaaacatttacatgagcagatgattaaagaattaagaacacatttaaagttctgggggctcgagaccccggacaaaaaatttcaggacaatcctccttatgaatggatggggtaccagctgcatccaaagaagtggacagtgcaagaaattcgcttgcctgataaaga------aatttggactgttaatgatattcagaaattagtaggagtgcttaattgggctagtcaaatttattccggaattaaaacaaaggagctctgtaaattaattaggggagccaaacccctagatgaagaagtagaatggactagggaagcagaa---------------------------------------------------------------------------------------------------------------------------ctagaatatgaagaaaataaactaataataaaagagcaaatgcatggggtatattatcagccagaaaaacccctaaaagccaagatacaaaaactgggtaatggacaatggtcatatcagatagaacaagatgataacaa---gc------cactaaaaacaggaaaatatgctaaggtaaagaatagtcacaccaatgatatgagaatgttagcaggactagtacaaaagatagcaaaagaggcactggtaatctggggaaggttgcc---cattttctacttaccagtagaaagggaagtttgggaacaatggtggcaggagtactggcaggtaacatggatccc---tgattgggaatttatatcaacaccccatctcatcaagttatggt---ataacttgctgagtgacccaata------ccaggggaagaagtttattatgtggatggagcagctaacagagttagtaaagaaggaaaagctggctatgttacctccaggggaaaagaaaaagtaatagccatagaagaaaccaccaatcagaaggctgaattacaggccattctgttagccttgaaggac---tctggtccaaaagtcaatatagtgacggattcacagtacgc------catgggtataatatcctcctccccagaaatcagtgacaatcctatagtgaatcaaattatagaacaaatgatcagtaaagaagcagtttacttaaattgggtaccagcacataaaggaataggaggtaatgaggaggaggacaaactagtta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtaga-ggaataag------acaagt------------------gttattcctagataacatggaaaaagcacag-gaagaacatga-tttataccataataattggagatccttagcacaagaatttggtttaccagggatagtggcaaaagaaatagtggcacagtgtcctaaatgtcaaat---------acatggagagccaatacatggccaagtagatgcaagcccaggaa--------cttggcaaatggactgcacacatttagaaggaaagataatcatagtggcagtccacgtagcaagtggacacatagaagcagaagtaataccagcagaaacaggagagaaaacagcttattttctgctaaaattagctggcagatggccagtatcacacttgcacacagataatggaccaaatttcaccagtgaaaaggtagcaacagtatgctggtgggctaagatagagcataccacaggagttccctataacccccagagtcaaggagtggtagaatcaatgaacaatcagctaaagaaaattataggacaaattagagatcaggcagaaaaactagagacagcagttcaaatggcagtactgattcacaattttaaaagaaaaggggggataggggagtacagtgcagcagaaagaatagtagacattatagcctctgacctcttaacaagcaaactacaaca---aaatattctcaaaattcaaaa----ttttcgggtttattacagagagggaagagatcagttg---------tggaaaggaccagcagaacttgtctggaaaggggaaggag----cggtggtcatcaag---gaaggtactgacttgaaagtaatacctagaagaaaagcaaagatcattaaagattatg---gaaa------------------------aaatgtggatagtcataccaacatggagagttga--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian_Immunodeficiency_Virus_SIVmnd2_Mandrill' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggaatgct---ccctggggcag---------tggcaagcccaggaactttcctgccatg------------------ccactgaccccatcagcacccccgatgccaggg------------------------------------------------------------------atggaggatccagcagagaagatgttattaga-------------------------ctatatgagaaaggggcaaca--------acagagggcagcaaaggagaccaagcaggagaaggacaagggtccctacgag------------------------------------gcagcttacaactccctcagttctctctttggaacagaccaactacagtagtagaaatagagggacaaaaggtagaagccctactggacactggagcagatgatacagtaatcaaaga------------tgtagattt---aacaggaaattggaaaccccaaattataggaggaattggaggagcaattagggtgaaacagtatttcaattgtaaaataacagt---------------agcaggaaaaagtactcatgcttcagtgctagtgggcc---ctacccctgtaa------atattataggtagaaatgttcttaagaagttaggatgtactctga---attttcc---------tattagtaagatagagacagtaaaagtaacactaaaaccaggaatggatggaccaagaattaaacagt-ggccactgtctaaagaaaagattttagccttacagacaatatgtgatgaaatggaaaaggaaggcaaaatctctagaataggtccagaaaatccatataatacaccagtattttgtataaaaaagaaagatggaaccagctggagaaaattagtagattttaggcaattaaatagagtgactcaggatttctttgaggtgcagctaggaatcccacatccgggaggcttaaaacaatgtgaacaaatcacaatattggatataggagatgcctatttttcatgtccttt---ggatgagagctttagaaagtacactgcatttaccattccatcggtaaataatcaaggcccaggaatcaggtaccagtataatgttcttccacagggatggaaaggctctccggcaatatttcaagcaacggcagacaaaattctaaaaacattcaaagaggaataccca---gaagtattaatttatcaatacatggatgatctgtttgtgggaagtgatctgagtgcgtcagagcacaacaaaatggtaaataggttgagggaacatttaaggttctgggggctcgagaccccagacaaaaagttccaaaaagaacctccttttgagtggatggggtatgtgctgcacccacagaaatggacagtccaaaagatacagctgccagaaaaaga------gacatggacagtaaatgatattcagaaactggtaggaaaactcaattgggcaagtcaaatctattccggaattaaaacaaaagagctctgcaaattgatcagaggggcaaaacctctagatgaagtagtagaatggactagggaagcagaa---------------------------------------------------------------------------------------------------------------------------ttagaatatgaagaaaataagttaatagtgcaggaggaagtacatggagtttattatcagccaggaaaacctctgatggccaaggtacagaaactgacacagggacaatggagctatcagatagaacaggaagagaataa---gc------ctcttaaggtagggaagtatgctaggacaaaacatgcccacacaaatgagttaagggtgcttgcaggattagtacaaaaaatagccaaagagtgcatagtgatttggggagaattgcc---aaaattctatctccccctggagagggaagtatgggatcagtggtggcatgattattggcaggcaacatggatccc---agaatgggaattcatctcaacaccaccactaataaggttgtggt---ataacctgttaaaagaaccaata------ccaggggaggatgtctattatgtggatggggcagcaaatagaaactctaaggaagggaaagcaggatactatacagctaggggaaaaagtaaagtaatagccttagaaaacacaactaatcagaaagcagaattagaggcaatactgttagccttgaaagat---tcaggtcctagggcaaatatagtcacagactcacaatatgc------attaggcatactttcagccactccagatcgatcagacaaccctatagttagagaaataatcaaccaaatgatagccaaagaagctgtatacttagcatgggtaccagctcataaaggcataggaggcaatgaacaaatagacaaattagtaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcaaa-ggaatcag------acaagt------------------actattcctggaaggaatagataaagctcag-gaggaacatga-caaataccataataattggagatcattaagtcaggaatttagcataccccctatagtggcaaaagaaatagttgcacagtgcccaaagtgtcaggt---------aaaaggagaacctatccatggacaggtggatgcggccccaggaa--------catggcaaatggattgcacccatctagaaggaaaggttatcatagtagcagtccatgtggccagtggatatctagaagcagaagtgataccagcagaaacaggaaaagaaacagcacatttcctgctaaaactagcaggaagatggccagtgaaacatttacatactgacaatggtccaaactttgtcagtgagaaggtagccacagtgtgttggtgggctcagatagagcacaccacaggaataccctataacccccaaagtcaaggagttgtggaagcaaaaaatcatcatcttaaggtaattatagagcaagttagggatcaagcagagagactggagacagcagtacaaatggcagtactcattcacaattttaaaagaaaaggggggataggggagtacagtccaggagaaagaatagtggatataataacaacagatattctaactaccaaattacaaca---aaatatttcaaaaattcaaaa----ttttcgggtttattacagagaaggaagggagcagctc---------tggaaaggaccagcagaactcatttggaaaggagaaggag----cagtggtaatcaaa---gaaggaacagacttaaaagttgtgcccagaagaaaagctaaaataatcagggattatg---gaaa------------------------aacagtggatagtaatccccacatggaggatagacaggagacagcttga------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVcpz_Chimpanzee' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggaaaggttggtctccgtggagcgggggatcaaagagaccagggaacttcctgcagggc------------------aggaaggaacccacagctccgcccctagaga------------------------------------------------------------------------------------------------------------------------------gttatgggtatcaggaagca-----acagga----aagagacaggaggaggagagggagaaggaaaaggaacccctgtat------------------------------------cctccgttaacctccctcaaatcactctttggcagcgacccctcctcggagtaaaaatagaagggcagctaatagaagctctgctagatacaggagctgatgatacagtaatagataa------------tgtacaact---aacaggaaaatggagaccaaaaatgatagggggaattggaggttttatcaaagttaaacaatatgacaacatagcaatagaaat---------------tgagggaagaaaaacaacaggcacggtattggtgggac---caacaccagtga------atataattggcagaaatatattgacacaaattggctgtactttaa---attttcc---------tataagtcccattgaaacagtgccagtaaaattaaagccaggaatggatggccctagagtaaaacaat-ggcctttaacagcagaaaaaattaaagcattaacagaaatttgtcaggaaatggaaaaagaaggaaagatttcaagaatagggcccgaaaatccatataatacaccaatttttgctataaaaaagaaagatagtacaaaatggagaaaactggtagatttcagggaattaaataaaagaacacaggacttttgggaagtccagttaggcataccacacccggcaggtttaaaaaagaaaaagtcagtaacagtgctagatgtgggagatgcttatttttcctgcccatt---agatgaaaattttaggaaatatacagcatttactatacccagtgtaaataatgaaacaccaggaattagatatcaatataatgtgttaccacaaggatggaaagggtcaccagcaatttttcaaagcagcatgataaaaattctaaccccattcagacagcagcatcca---gacttaataatttaccagtatatggatgatctttatgtgggatctgatttggaactaagagaacatagagaaaaggtagagctactcagacagcatctacttacttgggggtttactacccctgataaaaagcatcagaaggagccaccttttttgtggatgggctatgagctccatcctgataagtggacagtgcagccaatacagttaccacagaaaga------gacctggactgtcaatgatattcagaaactagtgggaaaactaaattgggcaagtcaaatatatccaggaataaaagtaaaacagttatgcaagctgataaaagggacaaaagctctaacagacatagtgaccatgacacaggaagcagaa---------------------------------------------------------------------------------------------------------------------------atggaattagaagagaacagRgagattttaaRggatccagtgcatggggtgtactatgacccagaaaaggaattaatagcagaa?tacagaaacagggaaatagtcagtggacttatcaaattttccaggaacagcataa---ga------acctaaaaacaggcaaatatgctaggcaaagatcagcacatactaatgacataagacaattagcagaggtagtacaaaaaatagctactgaaagtatagtaatctggggaaaaacacc---aaaattcagattacctgttcaaaaggaggtctgggaaacctggtggtcagagtattggcaagccacctggatccc---agactggga?ttcgtgaatacccctccccttgtaaaattatggt---accaattggaaacagaacccata------ccaggagcagaaacgttctatgtggatggggcagctaacagagagacaaagaaaggaaaagcaggctacgtcactgatagaggcagacagaaaatagtaaacttagaaaataccactaatcagaaagcagaactgacagctgtttatctagcattacaagat---gcagaacatatagttaatatagtcactgattcccaatatgt------gttagggataattcactcccagccagatcaaagtgagtcagaattggttaatctaataatagaagagttaataaagaaggaaaaaagttacctttcatgggtgccagcacataaaggagttggaggaaatgaacaagtagataaattagtta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gttctgggaatcag------aaaagt------------------tctctttttagatggtatagattaagcacaaggaagaacatgaggaaatatcataacaattggagagctatggcaagtgatttcaatataccacatatagtggccaaagaactagtagcccgttgtgataaatgccaact---------aaaaggagaggccatgcatgggcaagtagactgcagcccaggca--------tatggcaattagactgcacacacctagaaggaaaagttatcctggtggcagtacatgtagccagtgggtacctagaggcagaggtcattcctgcagagactggacaggaaacagcttattttattctaaaattagcaggaagatggcctgtaaaagtaatccacactgataatgggcctaactttaccagtaatacagttaaggcagcctgctggtgggcaggcatccaacaggaatttggaattccctataatccacaaagtcaaggagtggtagaatcaatgaataaggaattaaaaaagatcataggacaaattagagaacaagcagaacacttgaggacagcagtccagatggcagtgttcattcacaattttaaaagaaaaggggggattggggggtacactgcaggagaaagaattatagacatcatagcaacagacatacaaacaactaatctacaaaa---acaaattttaaaagttcaaaa----ttttcgggtctattacagggacagcagagatcccatt---------tggaaaggacctgccagacttctgtggaaaggtgaagggg----cagtggtaattaaa---gagagagaggaagttaaagtaatacccagaaggaaagcaaaaataattagggattatg---gaaa------------------------acagatggctggtgatgatagtatggcaggtggacaggatgagagtcaaggcctgg-----aatag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Human_Immunodeficiency_Virus_HIV_1_Group_M' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggaaaatttggccttccagcaa---------agggaggccaggaaattttcctcagagc------------------agaccagagccgacagccccaccagcagaga------------------------------------------------------------------------------------------------------------------------------tctttgggatgggggaagagataacctcccctccgaaacaggagcagagagacaaggaacaggcc---------------------------------------------------ccaccctcagtttccctcaaatcactctttggcaacgaccagtagtcaaagtaaaaatagaaggacagctaaaagaagctctattagatacaggagcagatgatacagtattagaaga------------cataaattt---gccaggaaaatggaaaccaaaaatgatagggggaattggaggtttcatcaaagtaagacagtatgatcagatacttatagaaat---------------ttgtggaaaaaaggctataggtacagtattagtagggc---ctacacctgtca------acataattggaagaaatatgttgacccagattggttgtactttaa---atttccc---------aattagtcatgttgagactgtaccagtaaaattaaagccaggaatggatggtccaaaggttaaacaat-ggccattgacagaagaaaaaataaaagcattaacagaaatttgtacagagatggaaaaggaaggaaaaatttcaaaaattgggcctgaaaatccatacaatactccaatatttgctataaagaaaaaagacagcactaaatggaggaaattagtagatttcagggagctcaataaaagaactcaagacttttgggaagttcaattaggaataccacatccagcgggcctaaaaaagaaaaaatcagtaacagtactagatgtgggggacgcatatttttcagttccttt---agatgaaaactttagaaagtatactgcgttcaccatacctagtacaaacaatgagacaccaggaatcaggtatcagtacaatgtgcttccgcagggatggaaaggatcaccggcaatattccagagtagcatgacaaaaatcttagagccctttaggtcaaaaaatcca---gaaataattatctatcaatacatggatgacctgtatgtaggatctgatttagaaatagggcagcatagaacaaaaatagaagagttaagagctcatctgttgagctggggattaactaccccagacaaaaagcatcagaaagaaccgccatttctttggatgggatatgaacttcatcctgacaagtggacagtccagcctataatactgccagaaaaaga------aagctggactgtcaatgatatacagaaattagtgggaaaactaaattgggcaagtcaaatttacccagggattaaagtaaagcaattgtgtaagctcctcaggggagccaaagcactaacagatatagtaacactgactgaggaagcagaa---------------------------------------------------------------------------------------------------------------------------ttagaattggcagaaaacagggagattctaaaagaacctgtgcatggggtatactatgacccatcaaaagacttaatagcagaaatacagaaacaagggcaagaccaatggacatatcaaatttatcaagagccatttaa---aa------atttaaaaacaggaaaatatgcaagaaaaaggtctgctcacactaatgatgtaaaacaattaacagaagtggtgcaaaaagtggtcatggaaagcatagtaatatggggaaagacacc---taaatttaaactacccatacaaaaagaaacatgggacacatggtggatggactattggcaggctacctggattcc---tgaatgggagtttgtcaatacccctcctctagtaaaattatggt---accagttagagaaagaccccata------gcaggagtagagacttactatgtagatggggcagccaatagggagactaagctagggaaagcaggatatgtcactgacagaggaagacaaaaggttgtttccctaactgagacaacaaatcaaaagactgaactacatgcaatccttttagctttgcaggat---tcaggatcagaagtaaatatagtaacagactcacagtatgc------attaggaatcattcaggcacagccagacaggagtgaatcagaattagtaaatcaaataatagagaagctaataggaaaggacaaagtctacctgtcatgggtaccagcacacaaaggaattggagggaatgaacaagtagataaattagtca---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gttct-ggaatcag------gaaggt------------------gctgtttttagatgggatagataaagctcaa-gaagaacatga-aagatatcacagcaattggagaacaatggctagtgattttaatctgccacctatagtagcaaaagaaatagtagccagctgtgataaatgtcaact---------aaaaggggaagccatgcatggacaagtagactgtagtccaggga--------tatggcaattagattgcacacatctagaaggaaaagtaattctggtagcagtccatgtagccagtggctatatagaagcagaagttatcccagcagaaacaggacaggaggcagcatactttctgctaaaattagcaggaagatggccagtaaaagtagtacacacagacaatggcagcaatttcaccagcgctgcatttaaagcagcttgttggtgggcaagtatccaacaggaatatgggatcccctacaatccccaaagtcaaggagtagtggaatctatgaataaggaattaaagaaaatcataggacaggtaagagagcaagctgaacaccttaaaacagcagtacaaatggcagtattcattcacaattttaaaagaaaaggggggattggggggtacagtgcaggggagagaataatagacataatagcaacagacatacaaactaaagaattacaaaa---acaaattacaaaaattcaaaa----ttttcgggtttattacagggacagcagagatccaatt---------tggaaaggaccagcaaaactactctggaaaggtgaagggg----cagtagtaatacag---gacaatagtgatataaaagtagtaccaagaagaaaagcaaagatcattagggattatg---gaaa------------------------acagatggcaggtgatgattgtgtggcaggtagacaggatgaggattag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Human_Immunodeficiency_Virus_HIV_1_Group_O' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggaaatactggcctccgggggg---------cacgaggccaggcaattatgcacagaga------------------caagtgcccccatcagcccctccaatggagg---------------------------------------------------------------------------------------------------------------------------------------------------------aggaaatgaagggacaagagaatcagaagggggatccgaacgaactc------------------------------------------tatccgtttgcctccctcaaatccctctttgggacagaccagtagttacagcaagggttgggggccatctatgtgaagttttgctggacacaggggcagatgatacagtactaaacaa------------catacaatt---ggaaggaaaatggacaccaaaaatgatagggggtataggaggttttataaaagtaagacaatataatgatgtgacagtagaaat---------------agagggaagagaagtacagggaacagtattggtgggac---ttactcctgtta------atattattggaagaaatatattgacaggattaggctgtacactaa---atttccc---------tataagccccatagccccagtgccagtaaaactgaaaccaggaatggatggaccaaaattaaaacaat-ggcccctatctaaagaaaaaatagaagccttgacagcaatatgtcaggaaatggaacaagaaggaaaaatttcaagaataggacctgaaaatccttataatacacctatctttgctataaaaaagaaagatagtagtaagtggagaaagctggtagattttagggaattaaacaagagaacacaagatttctgggaggtacagttaggtatcccacacccggggggtttaaagcagaagcaatctgtttcagtcctagatgtaggagatgcttatttctcatgcccctt---agacccagatttcagaaaatatactgctttcactattcctagtgtaaacaatgagactccaggaacaagatatcaatacaatgtcctcccgcaaggatggaaggggtcaccagctatattccaaagttcaatgataaaaattcttgatccatttaggaaaaacaaccca---gaattagaaatttgtcagtacatggatgacctatatgtaggatcagatttacccctgacagaacatagaaaaaaggtagaattgcttagagaacacttatatcagtggggattcactacccctgataaaaaacatcaaaaggaacctccctttctgtggatggggtatgaactccatccagacaaatggacagtacagcccatccaattgcctaacaagga------ggtatggacagtaaatgatatacaaaaactagtaggaaagttaaattgggcaagtcaaatctatcaaggaattagagtaaaagaattgtgtaagttaattagaggcaccaagtcattaacagaaatagtacctttaagtagagaagcagag---------------------------------------------------------------------------------------------------------------------------ctggaactagaagagaacagagaaaagctaaaggagccagtgcatggtgcatactatcagcctgacaaagatttatgggttaatattcagaagcaaggagaagggcaatggacttatcagatatatcaggatgaacataa---aa------acctcaaaacaggaaaatatactaggcaaaaggcctcccacacaaatgatataagactattagcagaagtaatccagaaggtgtctcaagaatctatagttatctggggaaaattgcc---taaatttaagctgccagttactaaagagacttgggaaacatggtgggcagactattggcaagccacttggattcc---agaatgggaatttgtcagcacacccccattgatcaaattatggt---accggttagaaagtgaacctatt------atgggggcagaaacatattatgtaaatggagcagctaatagaaatacaaaactaggaaaggcaggatatgttacagaacaagggaaacaaaagataataaaattagaggagaccaccaatcaaaaggctgaattaatggcaatattattagccttacaggat---tccaagaaaacagtaaacatagtaacagattcacaatatgc------actgggcatcatctcctcccaacctacacagagtgaatcccctatagttcagcagataatagaggaactaacaaaaaaggaccaggtatatcttgcatgggttcctgctcataaaggcataggaggaaatgaaaaaatagataagttagtaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcaag-gatattag------aagagt------------------cctattcctagaagggatagaccaggcacaa-gaagatcatga-aaagtatcatagcaattggagagcattagctagtgactttggactaccaccagtggtagccaaggaaatcattgctaattgtcctaaatgtcatat---------aaaaggggaagcaactcatggtcaggtagactacagtccaaaag--------tatggcaaatagattgcacacatatagaaggcaaagtcataatagtcgctgttcatgtggcaagtgggtttatagaagcagaagtgataccagcagaaacgggacaagaaactgcctacttcctgttaaaattagctgcaagatggcctgttaaaataatacatacagacaacgggcctaattttacaagtgcaaccatgaaggctgcatgttggtggaccaacataaaacatgagtttggaataccatataatccacagagtcaaggagtagtagaagccatgaataaggaattaaaatcaattatacagcaagtgagggatcaagcagaacacttaagaacagcagtacaaatggcagtatttgttcacaattataaaagaaaaggggggattggggggtacactgcaggagaaaggataatagacatgttagcatcacaaatacaaacaacagaattacaaaa---acaaatttttaaaattcaaaa----atttcaggtctattacagagacagcagagatcctatt---------tggaaaggaccggcacagctcctgtggaaaggtgaaggag----cagtagtcatacaa---gataaaggagacattaaggtagtaccaagaaggaaagcaaaaataattagacattatg---gaaa------------------------acagatggcaggtactgatagtatggcaagtggacagacagaaagtgaaaacgtgg-----aacagcctggtgaaataccat-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aa 'Simian_Immunodeficiency_Virus_SIVagmSab_African_Green_Monkey_Grivet' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagggtttggc---ccctggggcag---------agggaaacccaggaatttccctctgacc------------------tccatcagaccaacagctcccccaatggaac------gggattacagcaggccggaggaaaattggtatgcagacagacctccgaccagaggaccagggccagacgatccagcaacagccctgttaaagca-------------------------gtatgctgttcaggggaaacg-----gcagaa------acagcagtggcaaaaccactcgccacaacagagcccctacgag------------------------------------gaggcttacagctccctcaggtctctctttggagaagaccaatgaaaactgtgtacatagagggacagaaagtcactgctctattagacacaggagcagatgactcagtaatacaggg------------tatagaatt---aggagacaattggaaaccaagaataattggaggaataggaggatgtattaatgtaaaagcataccacaatcaggaggtaaaaat---------------agaagataaaacttgtaaagctaccattttggtaggag---aaacaccagtta------atattataggaagaaatgtcttagcacaattaggagttactctaa---atttgac---------acaaagagagatagaacctataaaagtccacttaaagccaggacaagatgggccaaggataaggcaat-ggcctttgtcaaaagaaaaaatagaggccttaaaggccatttgtgaagacttagaaaaacaaggacatttggaaagaatagggccagaaaatccatataacaccccagtctttgcaataaggaagaaagataaaactcagtggagaatactcatggacttcaggcagttaaataaaagtactcaagactttcaggaagtccagttagggataccccacccagcaggcttacagcaaagggagcagattacagtgttggacataggagatgcctattttagctgcccttt---agatccagactttcagaaatatacagcattcaccatcccatcagtcaataatagggagccaggcataagatatcagtataaggtgctcccacaggggtggaaaggctcacccacaatttttcagacaacagccaacaaaattctgcaggaatttaggcaaaagaaccca---gatgtagatatatatcaatacatggatgatatgttaatagccagtgataggccaaaggcagaacatctagtaatggtacagcagttaagagactatctagaaacttgggggtttaaaacccctgaaaagaagtttcaaaaggatccaccatacctctggatggggtatgaattgtatccaaagaaatggcaactgcaggagatcaccctaccagaaaggga------agaatggacagtgaatgatattcaaaaattagtaggaaagttaaattgggcaagtcaaatttacacagggataaagactaaacatttgtgtagactaattagaggagctagacctttgacagagatagtccaatggacagaagaggcagaa---------------------------------------------------------------------------------------------------------------------------ctagaattagaagaaaatagacagatcttaagacaaaagcagcagggacaatattatgaccctgctcttcctttaagggctaaggttcttaaactgggagatggccaatggggatatcagatataccagccagaaaataa---aa------tactgaaggttggcaaatatgcaaaaatcaaaacagcacacaccaatgaattaagaatgttagcaggcctagtacagaagataggaaaggaaagcatagtcatctggggacagatacc---tattatggaactgccagtagaaagagagctctgggaacaatggtggtctgactattggcaggtcacctggatccc---ggaatgggaaatggtcagtactcctcaattgattagattgtggt---acaaattagtaaaagatcccatc------ccaggagaagcagtctattatgtagatggggcagctaatagaaattccaaagaaggaaaagcaggatacttaacagatagaggggatcaaaaggtggtagcattagagaatactaccaaccagaaagcagagttagaggccattctgttagccttaagagac---tctggaagcaaagtaaatataataacagactcacaatatgc------tatgggtattatagcaggggaacctacagaatcagataataacatagtacaacaaattatagaggaactaataaagaaggaggcagtgtatatagcatgggtacctgcccataaaggagtaggtggcaatgaggaaattgataaactagtta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtcaa-ggaataag------acaagt------------------actattcctggacagaattgaagaagcacaa-gaagagcatga-taaataccatgccaattggaggagtatgcaacaagaatttggcttacctgctatagtagcaaaagaaatagtagcggcatgtcctaaatgccagat---------aaaaggggagtctgtacatgggcaagtagatgctagtccaggag--------tgtggcaaatggattgtacacacctagaaggaaaaatcatcatagtggctgttcatgttgctagtggatttatagaagcagaagtaatcccacaggaaacaggaaaagctacagcacacttcctgctgaagttagccagcagatggcccatcacacagctgcatacagataatggtaccaactttactagccagcaagtagcagctatttgctggtggggaaaaatagagcacacatttggggtaccctacaacccccaaagtcagggagtagtagaatctatgaataagcagttaaaagaaatcataggacaaattagagatgatgcagaaagattggaaacagcagtcataatggcagtgcacattcacaattttaaaagaaaaggggggattggggggtactctgcagcagaaagactaatcaatataatacatacagaactagaaaccaaaacacttcaaca---aaaaatttcaaaaattcaaaa----ttttcgggtctattacagggaaggcagagaccctgtg---------tggaaaggtccggctaagctcatctggaaaggagaaggag----cagtagttatacaa---gaacagggtgaattgaaaacaatcccaagaagaaaagccaaaattataaaagattatg---gaaa------------------------agcattggatagtcaggcccctctggaaggtaacgggcggacagcaggagaggtgg-----actag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian_Immunodeficiency_Virus_SIVagmTan_African_Green_Monkey_Tantalus' ggcagaggcagaggcccaccccgctgcttcaaatgtggacaaattgggcatatacaaaaagattgtccaagagcaggaccaaacaaatgcctaaaatgtgggaagccaggacacttagcaaaagattgccgcagtggacaggccaattttttagggagaatgccaacctgggg------------aacaaagccgcgcaattttttagagcaa---------------ggcggagccgttccgacggctcccccgatgcctg---------------------------------cgcacggattccccacaggttcgccagctgcgggagcatacgacccagccaggaaactgctggagca---------------------------gtatgccaaaaagggagatcaattgagaaagcagaaggagaaggaactggaggacta---------------------------------------------------------------------ttccttgagttccctctttggaggagaccaatgagtaagatctacatacagggccagccagtacaagttctgttagatacaggagctgatgataccataataaaggaagaaga------tatccattt---agaaggacgctggcggcctaaagtagtaggaggtataggagggggaatctcagtaaaacaatatgacaatattttagtgaatat---------------agatggaaaagaaactagaggtaatgtactaattggac---caacaccaataa------atattgtaggaagaaatattctagcacctttaggagcaagattaa---taatgggacagct---aaatgagaaaatacccataaccaaggtacaattgaaacctgggatgtcaggaccgaaattaaaacaat-ggcccctatcagaagaaaaaataaaagccctgacagaaataactcaggctctagaaaaggaaggaaaaatttctaaggttggaggagagaatccttacaatactcccgtgttttgtatccggaaaaaagacaaaacacagtggaggatgttaatagattttagagctctcaataaagcaacacaggacttctttgaggtacaattaggtattccccatccagcaggattgaaaagaaagaaacagatcacagtactagatataggagatgcctattatagtataccatt---ggatccagaattcaggccctatacagcttttaccatcccacaagtaaataatgtagggcctggaattaggtatcaattcaattgtctacctcaaggatggaaaggatcacccaccatatttcagcacacagcacagcgagtcctaaaagaaataggaaaaaaggttcaa---gatttagaaataattcagtacatggatgacatgtggataggatcagatttgccagagaaagaacatgatgaaaaggtagaagaggtaagaaagcttctgctattaagaggcttcgagacgccagataagaaggtgcagaaaagacctccatatgattggatgggatacaagttgtacccttctcactggagtctcaacaaaatagagataccagagcaaga------acactggacagtgaatgatattcaaaaattagtaggagtgttaaattgggctagtcaattatatccaggaattaagacaaaagccctatgcaaattactacgaggagctcaagatttaacagctgtagtgcaatggacggagcaggcagag---------------------------------------------------------------------------------------------------------------------------gtagagttcagacaaaatcaagagatcttaaaagaagagcaacagggagcttactatgacccaagtaaatctttgagagccactattaccaagctggatgatgggcaatggggatatcaattcaaacaggagggaaaag------------tactaaaaacaggaaaatatacaaagagcaaaaatactcatacaaatgagtttagagtattggcaggaatggtccaaagggtgtgcaaggaagcgatcaccttttggggaaaattacc---catcatggaagtaccagtagaaagagaagtatgggaacaatggtggagtgactattggcaagtcacatggctacc---agagatagaattcatctccacaccgcccttaatcaaattatggt---ataacttggtaaaagatcccata------ccaaaagcaaaggtgtattattgcgatggggcatgcaatagaaattccaaattaggaaaggcaggcttcctaactaacacaggagaatcacaggtcatagaattagaggataccacgaaccaacaagcagaattacaagcagtccttctagcattaaaacat---agtaagagcaaagttaatatagtaacggattcacagtatgt------catgggaatcctgacagcacaacctacacaaagtgactccgtgctagtaaatcaaataattgaagaaatgattaataaagatgctatctatttaacctgggtaccagcacataaagggatagggggaaatcaagaaatagataagctagtaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gccag-gggattag------gcaagt------------------gctattcttagacagaatggaagaagcccag-gaatcacatga-taaatatcatactaattggcaatttataagagatgcattcggtataccagcactggtagcaaaagaaatagtagctgcttgcccaaaatgtcaaat---------tcgaggagaaccgatacatgggcaagtagatgccagtgtagggg--------tctggcaaatggactgtacacatttggaaggaaaaatcattatagtagcagtccatgtggccagtggcttcttagaagcagaagtcatagctagggaaacaggaaaagaaacagcaaaattcctgttaaaaatcattagtaggtggcctattacaaaattacatactgacaatgggccaaattttgttagtcaggaggtacaaactatttgttggtggggacaagtagagcacacaacagggatcccctataacccacaatcacaaggaagtgtagaaagtatgaatagacaattaaaagaaactatagaaaaaattagagaagactgtgcatttttggaaacggcagtcctcatggcctgccacattcacaattttaaaagaaagggaggaatagggggtatgaccccagcagagaggctaataaacatgataaccacacaactagaaatacaacacatacaaac---acaacaacaaaaaatttcaaa----ttttaaggtctactacagagaaggaagagagccagtg---------tggaaaggaccagccactctcctctggaagggagaaggag----cggtagtcataaaa---gaaggtgaggagttgaaagtagtaccaaggagaaaggcaaaaattatcaaagaatatggagagagaaa---------------------aactgtgggtgacaagactaacatggagggttag--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Human_Immunodeficiency_Virus_HIV_2' -----------------------------------------------------------------------------------------------------------------------------------------------------tttagggttgggc---ccacgggg------------aaagaagcctcgcaacttccccgtgacc------caagcccctcaggggctgataccaacagcacctccggcag------------------------------------------------------------------------------atccagcagcggaactgttggagag-------------------------atatatgcagcaagggagaaa-----gcagagggagcagagggagagaccatacaaagaggtgacggaggacttgctgcacctcgagcagagagagacacctcacagagaggagacagaggacttgctgcacctcaattctctctttggaaaagaccagtagtcacagcgtacatcgaggatcagccggtagaagtcttactagacacaggggctgatgactcaatagtagcagg------------aatagaatt---aggggacaattacactccaaaaatagtagggggaatagggggatttataaacaccaaagaatacaaaaatgtagaaataaaagt---------------actaaataaaagagtaagagccaccataatgacaggag---ataccccaatca------acatctttggcagaaatattctgacagccttaggcatgtcattaa---atttacc---------agttgccaagatagagccaataaaagtaacattgaagccagggaaagatggaccaaggctgaaacaat-ggcccctaacaaaagagaaaatagaagcactaaaagagatctgtgaaaaaatggaaaaagagggccagctagaagaggcacctccaactaatccttataatacccccacatttgcaattaagaaaaaggacaagaacaaatggaggatgctgatagattttagagaactaaataaggtgactcaagatttcacagaaattcagctaggaattccacacccggcaggactagccaaaaagaaaaggatctctatattagatgtaggggatgcctatttttccataccact---acatgaagattttaggcagtatactgcatttaccctaccagcagtaaacaatatggaaccaggaaaaagatatatatataaagtcttgccacaaggatggaagggatcaccagcaatttttcaatacacaatgaggcaagtcttagaacctttcagaaaagcaaaccca---gatgtcattctcatccagtacatggatgatatcttaatagctagtgacaggacaggtttagagcatgacaaagtggtcctgcagctaaaagaacttctaaatggcctagggttttctactccagatgagaagttccaaaaagaccctccatttcaatggatgggctgtgaactatggccaactaaatggaagctgcagaaactacaactgccccagaaaga------catatggacagtcaatgacatccaaaagctagtgggagtcttaaattgggcggcacaaatctattcaggaataaaaaccaaacacttatgtagactaattagaggaaaaatgacactcacagaagaagtgcagtggacagaactagcagaa---------------------------------------------------------------------------------------------------------------------------gcagagctagaagaaaacaaaattatcttgagccaggaacaagaaggatattattaccaagaagaaaaagaattagaggcaacaatccaaaaaagccaaggacatcaatggacatacaaaatacaccaggaagagaaaa------------tcctaaaagtaggaaagtatgcaaagataaaaaatacccataccaatggggtcagattactagcacaggtagttcagaaaataggaaaagaggcactagtcatttggggacggatacc---aaaatttcacctgccagtggagagagagacctgggagcagtggtgggataactactggcaagtgacatggatccc---agagtgggactttgtatctaccccaccactggtcaggttaacat---ttaacctagtaggagatcctata------ccaggcgcagagaccttctacacagatggatcatgcaatagacagtcaaaagagggaaaagcaggatatgtaacagatagaggaaaagacaaagtaaaagtattagaacaaactaccaatcagcaggcagaattagaagtctttcggatggcactggcagac---tcaggcccaaaggttaatatcatagtagattcacagtatgt------aatggggatagtagcaggccagccaacagagtcagaaaatagaatagtgaaccagatcatagaagaaatgataaagaaggaagcagtctatgttgcatgggtcccagcccataaaggcataggaggaaaccaggaagtagaccatttagtaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtcaa-ggcatcag------acaagt------------------attattcctggaaaagatagagcccgctcaa-gaggaacatga-aaaatatcatagcattataaaagaactaacccataaatttggaataccccttctagtagcaagacagatagtaaactcatgtgcccaatgccaaca---------gaaaggagaagccatacatgggcaagtaaatgcagaaataggcg--------tttggcaaatggactacacacacttagaaggaaaaatcattatagtagcagtacatgttgcaagtggattcatagaagcagaagtcatcccacaggaatcaggaaggcagacagcactcttcctattaaaactggccagtaggtggccaataacgcacttgcacacagacaatggccccaacttcacttcacaggaagtgaagatggtggcatggtgggtaggtatagaacaatcctttggagtaccttacaacccacaaagccagggagtagtagaagcaatgaatcaccacctaaagaatcagataagtagaattagagaacaggcaaatacaatagaaacaatagtactgatggcagttcattgcatgaattttaaaagaaggggaggaataggggatatgaccccagcagaaagactaatcaacatgattaccacagaacaagaaatacaattcctccaaag---aaaaaattcaaattttaaaaa----tttccaggtctattacagagaaggcagagatcagctg---------tggaaaggacctggtgaactactgtggaagggagaaggag----cagtcatagtcaag---gtagggacagacataaaagtagtaccaagaaggaaggccaagattatcagggactatggaggaagaca---------------------ggaactggatagtagtccccacctggagggtgccagggaggatggagaaatggcatgcccttgtcaagtacctgaaatacagaacaaaagacctagaggaggtgcgctatgttccccaccacaaggtgggatgggcatggtggacttgcagcagggtaatattcccactacaaggaaaaagtcatctagaaatacaggcatattggaacctaacaccagaaaaaggatggctctcctctcatgcagtaagattaacctggtatacagaaaagttctggacagatgttaccccagactgtgcagacatcctaatacatag 'Simian_Immunodeficiency_Virus_SIVsmm_Sooty_Mangabey' -----------------------------------------------------------------------------------------------------------------------------atgccccgaaagacaggcgggttttttagggcttggc---ccatgggg------------aaagaagccccgcaatttccccatggcc------cagatgcctcaggggctgacaccaactgctccYccagagg------------------------------------------------------------------------------atccagctgtggatctactgaagaa-------------------------ttacatgaaggtgggcagaag-----gcagagggagaacagagagagaccttacaaggaggtaacg---------------------------------------------------gaggatttgctgcacctcaattctctctttggagaagaccagtagtcactgcctacattgaagaacagcccatagaagtattattagatacaggggctgatgattcaattgtagcagg------------gatagaatt---gggtccaaattatacccctaaaatagtaggaggaataggaggcttcattaacaccaaagaatataaagatgtaaaaataaaagt---------------attaggcaaagtaattaagggaacaattatgacaggag---ataccccaatta------acatttttggcagaaatctgctaacagctatgggcatgtctctaa---atctccc---------catagctaaggtggaRcctataaaagtaacactaaaaccaggaaaagatggaccaaaattaagacagt-ggccgctatcgaaagaaaagataattgcattaagagaaatctgtgaaaaaatggagaaagatggccagttagaggRagctcctccaaccaatccatataacacccccacatttgctataaagRagRaagacggaaataaatggaggatgctaatagattttagagaattaaacaaggtcactcaagattttacagaagtacagttagggataccacaccctRcaggactagcaaagagaagaaggatcacagtgttggatgtaggtgatgcatatttctccataccttt---agatgaagaattcaggcaatacactgcctttaccttaccatcggtaaacaatgcagaaccaggaaaaagatacatctataaggtattacctcaagggtggaaaggatcaccagctatttttcaRcatactRtgagaaatgtattagaaccttttagaaaagcaaatcca---gatgtgaccctgatccaatacatggatgacatcttaatagctagtgatagaacagatttagaacatgacagggtagttttacaattaaaggaacttctgaacagtataggattttccaccccagaagagaagttccaaaaagatcccccattccagtggatgggatatgaattgtggcccaccaaatggaaactgcaaaaaatagagttgccgcaaagaga------aacctggacagtaaataatatacaaaaattagtaggagtgctaaattgggcagcacaaatttatccaggaataaagactaaacatctttgcagattaatcagaggaaaaatgactttaacagaagaggttcagtggactgagatggcagag---------------------------------------------------------------------------------------------------------------------------gcagaatatgaagaaaacaagataattcccagtcaagaaccagagggatgttactatcaggagggaaagccactagaggcaccagtaataaagagtcaggataatcaatggtcatataaaattcaccaagaggacaaaa------------tactaaaagtaggcaaatttgcaaagattaaaaatacacatacaaatggagtcagcttattagcacatgtagtgcagaaaataggaaaagaagcaataataatttggggacaggtgcc---aagatttcatttgccagtagagaRagaaatttgggaacaatggtggacagattattggcaagtaacctggatacc---agaatgggactttgtgtcaacacctcccttagtcagactagttt---tcaacctagtaaaagagcctata------cagggagcagaaacattttatgtagatagatcctgtaataggcagtcaagagaaggaaaagcaggctatgtgacagatagaggcagaggcaagacaaaactgctggaacagactaccaatcaacaagcagagttggaagccttttatctagccttagcagat---tcaggaccaaaagcaaatattatagtagattcccaatatgt------tatgggcatagtagcaggtcaacccactgaatcagaaagtagattagtaaaccagataatagagaaaatgattaaaaaggaagcaatttatgtagcatgggtacctgcacataaaRRaataggagaaaatcaagaagtagatcatctagtta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtcaa-gaaattag------acaagt------------------cctattcttagaaaaaatagaaccagcgcag-gaagagcatga-aaaataccatagcaatgtaaaaaaattggtattcaaatttRgtttacctaggctagtagcaaaacaaatagtagacacatgtgataaatgccacct---------gaaaggagaagcYatacatgggcaagtaaatgcRgRactaggga--------cttggcaaatggactgtacacacctagagggcaaaataattatagttgcagtacatgtgggtagtggattcatagaggcagaagtaatcccgcRggaaacaggaagacaaacagcactgtttctgctaaaattagccagcagatggcccatcacacatctgcatactgataatggtgccaatttcacatcacaagaagtgaaaatggttgcttggtgggcaggRattgaacagacctttRgggtaccttataatccacagagccaaRgggtagtggaagcgatgaaccatcatctaaaaacccaaatagatagaattagagaacaggcaaattcaatagaaactatagtactaatggcaattcattgcatcaattttaaaagaaggggaggaataggggatatgactccagcagaaagattagtcaatatgattaccacagaacaagaaatacaattccaacaatc---aaaaaattcaaaatttaaaaa----ttttcgggtctattacagagaaggcagagaccagctg---------tggaaaggacccggtgagctattgtggaaaggggaaggag----cagtcatcctaaag---gtagggacagagatcaaggtagtaccaaggaggaaagctaaaattatcaaagactatggaggaggaaa---------------------agaattggatagtggttcccacttggaggataccggggaggctagagaagtggcat---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ag 'Simian_Immunodeficiency_Virus_SIVsun_Sun_Tailed_Monkey' -----------------------------------------------------------------------------------------------------------------acaagctcaatgcccacaaggaaaacaggtgaattttttagggtatggc---ccctggaacag---------ggggccgccagggaactttccagtcatgccttctgctccgcctctagaggatctgacattggggaacagaatgacaccaccccagtcaaaggcagagagagctctggag---------------------------------------------------------------------------------------------acctacagactgttaggacagggcctcagagcacagcagaagaggaaggaaaggggggaa---------------------------------------------------------tgtcaggagccatgcttgaatatgctctttccagaagacccttagagaaggtcttcattaatgggcaacctgtgactgctttattggacacgggagcagatgacacaatagtgtctgaagattc------tgtgtccat---agaaggtcactggaagcccagggtagtgggtggtatagggggacaaattagagtaaaagaatatgcagatgtctttgtagaaat---------------tagggataaaacagctacaggaacagtgttggtggggc---caacaccagtag------atatcatagggagaaatattctttcagccttagggggaagattag---ttttagccactct---tagtgaaaagatcccaattacaaaagttaagttaaaagaaggggccgctggaccaaaagtgaaacaat-ggcccctgtcaagggagaaaatagaaggcctacagaaaatttgtgatagattggaagcagaaggaaagattagcagggcagacccagggaacccttataacacaccaatttttgctataaagaagaaagacaaaaatgaatggagaaagttaatagattttagagtactaaatggtatgactcaagactttcatgagttacagttagggattcctcatccagcaggattaaagaagtgtaaacagattacagtagtagatgtgggggatgcatacttctcaataccatt---ggatccagattatagaaagtatacagcattcacaataccgtcagtaaataatcaggcaccaggaaaaagatatgtgtataatgtcctaccacagggctggaaaggaagtccttgcatctttcagggaacggtagcgagcctcttagagaaatttagaagacagtatcca---gaagttcaattgtaccaatacatggatgatttactcataggatctgattatgagaaaaagaagcatgaagaaatagtgaaacaattgaggcagctactcatggaatggaatttagaaacaccagagaaaaaatatcagggagagccaccctataagtggatggggtacatattacacccagacagatgggagatagagaagataaaattaccccctctaga---agaagagccaacagtgaatgacatacagaaaattgtaggagttatcaattgggcttcacaattatatgaagggctcagaacaaaagaattatgtaaactaattagagggaataaaccattagcagagaaagtaaagatgacagaagaagctagg---------------------------------------------------------------------------------------------------------------------------gaagaataccagagtaatcaggaggtattacaggagtcagtatcaggcagttactatgaaccagataaagaattaatttgcagagtgcaaaaggtaaagcaaggaatattaacctttcaatggttgcagggaaaacaag------------tattaagggtaggaagatatcaaaagagaggggcagcacatgagaatccttgtcaacagttagcagctgccctacaaaagataggaagagaaagcatagttatatggggatttgtgcc---aaagatacaggtacccatacaaagagagatatggagtcagtggtgggcagactactggcagtgtacatggatccc---tgagttagaatttgtcagcactcctaagttggagcaagagtggt---atactctagccacagaaccagtg------ccaggag---acacctactatgtggatggagcagctgaaaagctagaaaagagagggaaagcaggatatataacccagggaggaagatccagagttaagaaattggaaaacaccaccaatcagcaagcagaactagaggctataaaaatggccttggaggat---agtaggagctcagttaatatagtaacagactcacagtatgc------cttaagactgctcagtaagagacccacagaaacagattcagagctagtaaaggagatcgtagagctcataaggcaaaaggaccaggtatacctaggttgggtaccggcacacaaaggaataggaggaaatcaagaaatagatcaactagtta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gccag-ggaatcagaaagagacaggt------------------aatgtttatagaaaagatagaaccagctgta-gaagaacatgg-gaagttccataacaatgcagcctctttgcaggagatgtttgacatacccctagtggtagcaaagcagatagtcaatgaatgtgcacaatgtcaaca---------gaaaggggaagccataacaggacaagtagatgcctcagtgggca--------tctggcagatagattgcacccacatggaagaaaaagtcataatagtagcggtgcatgtggcttcagggtatatggtagcagaagtactacccaatgagcaagggaagacaacagccacttggctgttaaagctctgtgccatgtggccagtaaaacagatacatacagataatgggccaaatttcatcagtaaagatgtggaggcagtatgttggtggttaggcatacagcatacaacagggataccttacaaccctcagagtcaaggagtagtggaagcaaagaacaaggtattaaaacaaattatcagcagaattagagaagatgcacaggaattgaaaactgcagtactcatggctctgcacattcataattttaaacaaaggggaggactagggggaatgacagcagcagagaggtttatcaacatgattaatgcagatctagaaacacaatacttacagaa---aataaattcaaaaattttaaa----atttaaggtctactacagagaaggaagagatcctcag---------tggaaaggacctgctaaacttctgtggaaaggggaaggag----cagtagtcatcaaa---cagggtgagaacatcctggtagtacctaggagaaaagcaaaactagtaaaggactatggaggagaatcctcct----------------cagtggagatggtgggatga----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Simian_Immunodeficiency_Virus_SIVlhoest_Lhoests_Monkey' --------------------------------------------------------------------------------------------------------------atttgcacagtgcccaaaaccaaaaggaaaggtgaattttttaggatatggt---ccctggagcag---------caaacctccaggcaattatcctctactg------ggaggagctgcagggagaattccatcagctcccccaatggagagtgctccaacaaaagcagagagagcactggag---------------------------------------------------------------------------------------------acttacaggactttaggacaacagctgaaaaggcagcagcagcaagtcccacagaaatgt---------------------------------------------------------gtggacgagccctgcctgaattcactctttccagacgaccaatagaaagtatattggtcaatgggcaaccagtgtcagcactgttggacactggggctgatgacacaattttttcagaaaattc------agtaagaat---agaaggaccctatactccaagagtagtagggggcataggggggcaaattagggtaaaagaatatagagatgtctttatagaaat---------------agcaggaaaaactacagtagggacagtcttattaggac---ctaccccagtag------atattgtagggaggaatattttaactgcaatgggggccaaattga---ttttagctcagtt---aagtgataaaattcctattacaaaggtatctttaaaacctgggtgtgatggaccaagagtaaagcagt-ggcctctatcaaaagagaaaatagaaggcctacaagctatttgtgataggttagaaaaagaaggaaaaatatctccagtggatccagggaacccatacaatactccaatatttgctatcaagaagaaagacaaaaatgaatggagaaagttaattgatttcagaaagctcaatgaattaactcaagactttcatgagctacaattaggtattccacacccagcaggtatcaagaaatgcaaacagattacagtagtagacataggagatgcctatttcagtatcccttt---agatccaaattacagaaagtatacagcatttactataccttctctcaataatcaagagccaggaaaaagatatcagtacaatgtgctgccacaagggtggaaggggagcccttgtatatttcagggaacagtagcaggacttctctcagagtttaggaaattaaatcca---gacatgatcatttaccaatatatggatgatttattcataggatcagatagagagagaaaaggacatgatcaggcagtaaaagaactcagagaacttcttatgacatggaacttagagacaccagaaaagaagttccaagcagagccaccctatcattggatgggttatgtactgcatcctgataggtgggaaatagaaaagattaaattaccagagatggatctaacaaaaactacagtaaatcaaatacagaaactggtgggagtacttaattgggcagctcaattgtatgatggtattaggacaaaagaactctgcaaattaataaggggagtaaaacccttggaagaaatcataaactggacagaggaagccttg---------------------------------------------------------------------------------------------------------------------------gaagaatatgggcagaacaaagaggtacttaaagaaaagatgcagggagcctattatgacccagaaaaggaacttattgtcagggtacagcaaaacaaaaaggggataattactttccagtggagacaaggaaataaca------------tcttaagagctgggaggtatcaaagacagaaggcagcacacacaaatcccctacagaaattagtagaagctattcagaagataggaaaagaaagcatagtcatctggggctttgtgcc---aaaaattcaagtcccagtgactagagaagtctgggagcactggtggagcgaccactggcaggttacatggattcc---agacttagaattcatttctaccccgcaattagaacaagagtggt---acatttgggaggcagaacccata------ataggggtagacacctactatgtagatggagcagcagaaaaggtaggaaaaacaggaaaagcaggatatataacacaatcagggaaagagaaagtaaaggagttaactgacaccacaaatcagcaagcagaactagaggcagttctaatggcattacaagat---agcaatagtaaagtaaatatagtaacagattcacaatatgt------aatgaaaatattgtcacaaagaccaacagaaacagaacaccccatagtaaaagacatcatagaacaatgcaagcagaaagatcaagtttatctaggatgggtgcctgctcataaaggaataggaggtaatcaagaggtagaccacctagtaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtaaa-ggtataagacagaaacaggt------------------catgtttctagaaaagatagaacctgcagta-gaagaacatag-caaattccataacaatgcaaaggatctagaagaaaaatttaacctaccccccatggtagccaaacaaattgtcaatgactgtgcaaactgtcaaaa---------gaaaggagaagccataacaggacaagtggatgtctcagtgggta--------tttggcagctagactgtactcacttagaaggacaggtcattataaatgcagtccatgtggcctcaggcttcatggttgcagaagttataccagatgagacaggaaaaacaacgtcacatttcctgttaaaattatgcagtagatggcctgtaaaacaaatacatacagacaatggtccaaattttgtaagtaaggaggtacaggcagtaacctggtggatagggatagaacatacaactgggataccttataaccctcagagtcaaggggttgtagaagcaaaaaacaaagttttaaaaagtattatagaaagagtaagagaagatgcacagcaactaaaaacagcagtactaatggcagtccacattcataattttaaacaaaggggaggactaggggggcttacaccagcagagaggtttattaatatgattaatgcagaactagaaacacaatatctacaaaa---attaaattcaaaaattttaaa----atttaaggtttattacagacaaggaagagatcctcag---------tggaaaggaccagcgcaacttctgtggaaaggagaaggtg----ctgtagtggtaaaa---gaaggggagaacatcttctcagtccccagaagaaaagcaaaactagtaaaagattatggagaggg------------------------accaaaggatagtgagagtagcctggataacaactag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Simian_Immunodeficiency_Virus_SIVcol_Mantled_Guereza' --------------------------------------------------------------------------------------------------------------------------------------------------ttttttagg----------------ggcaaccaggggggtggagctacagacagccatcttcccccc-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gaagatgagcaaagacctgccacccaggagggagaagggggag---------------------------------------------------------agtctctatccctccttgaagtctctcttcggagacgaccaatagttatagtagaagtagaaggacaaaagtgccaagcgctgttagatacaggagcagatgatacagtttttaaagaagaaga------tgttcaatt---aacaggcgcttggacagcagtacaaattcagggaatagggggagcaatcagagtaaaacagtatagagataaaattctaaagat---------------gggaggaaaagaatacagaggagatatcttaataggac---acacccccataa------atatagtaggtagaaatatgttaaa------agaagggaaattag---tagtagctcaatt---atcagataggatcccagtcaccaaggtgacgttaaaagagggcatggatgggccaaaagtaaagcagt-ggcccttaagcaaagaaaaaatagaaggtttacaaaagatatgtgaaagattggaagcagagggaaaaatagaaaaagcagaattagggaatccatataatacaccaatattttgcattaggaaaaaagataaaaatgaatggaggaaattaatagatttcagggagctaaacaagagaacacaagacttcatggaagtccaattagggataccacacccaggaggtcttatagaaaagacccatataacagtattagatataggagatgcctatttctcaattccctt---ggatccggattatcaaaagtacacagcttttacaatcccatcagtgaacaatttggcaccagggactagatatgtgtacaaagtgctaccgcagggttggaaagggtctccaacaatcttccaaggaacagtagcaagaatcctagaaccgttcaggaagagaggacaa------ttgcaaatagctcagtacatggatgatttatatctaggatcagatctgcctttagaggagcatagaagggcagtacaggagctcagagatgcactcttgtactatgggttagagacaccagaaaagaaataccaggcagatcctccatacaagtggatgggctatgaattacatcctaagcaatggaaattacaaaaggtcaaaattccagaacagga------taagtggacagtaaatgatatacaaaaattggtaggagccttaaattggttaagccaattatacccaggaatcaggacaaaggagataagtaaatgcactaaaggtaagaagcatttgttggaggaagtgcagcttagtgcagaagcagaa---------------------------------------------------------------------------------------------------------------------------gaggagctacaagataacaaacagataatcaaagaagaagttcagggagtgtactatataccacatgaggacatttgggtagacattttcaggttagggaaaggacaatggggctatgcagtctgccaaaaacatggaa------------cgctaagaagaggaaaacataacacaggcaaaaatcagcactttaatagtatgcaggagttagcttcagttatacaaaagataggtagggaagccatagtcacctggggaaaggtgcc---caaaatgaaagtcccagcaaagagagaggattgggaacagtggtggagtgactattggcaaagtgcttggatccc---agagatagagtttgtctcatcctcttatgtagtaaaattagtat---ggaacttggttttagagcctctg------aaggaggcaccaacttattggacagatggaggatgctccaggaaattaggagcgggaaaggcaggatggataaattcaaaaggagaagaagaagtagtcaatcttcatgaagggtcaaatcagcaagcagagctgacaggagttttgctagctctaaaacat---gggccaaaaagaatgaatttggtaacagacagtctttatgc------attagggataattactgggcagccatatgatcagcttccatctagtagaggggagattattcaggcaggtatggctaaagaagccattcatgtagcctggtgtccagcacataaagggataggaggaaatgaactgatagatcaaaaggta----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggagtaag------acaggt------------------aatgtggatagataaaatagaagcagcagaa-gaagaccatca-aaagtttcatagtaatgtgcagtatctaaaagaacaatttgggttacccactgtagtagcaaaagaaatttgggaaagatgttcagagtgtcagaa---------caaaggacaagctgttcatggccagctagattatagctatggct--------tatggcaattagattgtactcatgaggaaggaaaggttatcttagtagcagtacacgtctgtactctgttctgctgggcaaccatattaaagagagaaacaggggaagaaacaggtagggccctcataaaattggctagtcagtgggaggttagacaagttcacacagataatgggccaaattttgtaagtcagcactttaaggcagcagtgtggtggctaggaatagcacacaccacaggacacccctataatcctcaatcacaaggagttgtagagcagagaaacaaggatgttaaaagaaagattaagaaaatgaaagatcaagcagaaacattagaaagcaaagtagcaatggcagtctatgcgctcaattttaaaagaaagggaggattaggggggaagagtccatgggaaagacaagtagaaagagcaataatagaattagatacacaaaacctaacaaaattacaaaatcaaaaatttaaaaa----ttttaaggcctactggaaagagcacacaggagag------------tggcaaggaccaggagaactggtgtggaaaggtgaaggag----cggtagtcatcagaaattctcaaggtaccttgtttgtgaaacctagaagaaaagtaaagatcaccagactccaatatggaga------------------------agatgtgggcagtgagaatttgttatccaatgggcaaaaggaagccgaaaccgttaagggaatggattaa--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Jembrana_Disease_Virus' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cacattagaaaaatataaagcccttaaggaaattgttgaggaactactaaaagatggaaaaatctctagaaccccttgggataatcctttcaatacccctgtttttgtaataaaaaagaaagggggaagtaagtggagaatgctaatggatttcagggccttaaataaagtgacaaacaaaggacaagaattccaaatcgggctgccataccccccaggaattcagcaatgtgaacatataacagctatagacataaaagatgcctactttaccatcccttt---agatgagaattttagacaatacactgctttctcggtggtcccggtgaatagagaagggcctctagaaagatatcattggaatgtgttacctcaagggtgggtgtgtagccctgccatatatcaaacaaccactcaggagataattgcagagataaaagatagatttcct---gacattgtgctctatcaatatatggatgaccttttaattggatcagacagacc------agaccataaaagggtggtgagtgaaattagggaagaattaggggcttatggttttaaaactccagaagaaaaaatccaggaagaacaggttcaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Bovine_Immunodeficiency_Virus' --------------------------------------------------------------------------------------------------------------------------------acagcaaaaatgctaccattgtggcaaacctggccaccaagcaagaaactgcaggtcaaaaaacgggaagtgctcctctgcccct---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tatgggcagaggagccaaccacagaacaattttcaccagagcaacatgagttctgtgaccccatctgcaccccctcttatattagattagacaaacagccttttataaaggtgttcatagggggaagatgggtaaaagggttagtagacactggagcagatgaggtagtgcttaagaacatacattgggataggataaa---agggtatccagggacaccaattaaacaaattggggtaaatggagtaaatgtggccaaaaggaagacccacgtagagtggagatt---------------taaggataagactgggataattgatgtcttgttctcag---atactcctgtaa------acctttttgggagatctcttctacgtagcatagtgacttgcttcaccctacttgttcacacagaaaaaatcgaacccctacccgtcaaggtaa------------ggggaccagggcctaaggtaccccagt-ggcccttgacaaaagaaaagtatcaggctcttaaggaaattgtgaaagatcttttagcagaaggaaaaatttccgaagctgcttgggataacccatataataccccagtttttgttataaagaaaaagggaacgggaagatggaggatgctaatggattttagggaattaaataagataacagttaaaggacaagaattctctacaggcttaccttaccctccaggaattaaggaatgtgaacacttaactgcaatagatataaaagatgcctactttactatcccttt---acatgaggactttagaccctttacagccttctctgtagtccctgtaaatcgagaaggacctatagagaggttccagtggaatgttctaccacaaggatgggtatgtagccctgccatttatcagactaccacccagaagattatagaaaacattaaaaagagtcaccca---gatgtcatgttgtatcaatatatggatgatttgttgattgggtctaatag------ggatgatcataagcaaatagtgcaggaaatcagggataagttaggatcatatggtttcaagactccagatgaaaaggtccaggaagagag---agtgaaatggatcggttttgagctcacacccaagaaatggcgttttcagcccaggcaactaaagataaaaaa------cccactcacagtaaatgaattacagcaattagtaggtaattgtgtttgggta---cagccagaagtaaaaatccctctataccccttaaccgatctactgagggataagaccaatctccaagaaaagatacaactaacaccagaagccatc---------------------------------------------------------------------------------------------------------------------------aagtgtgtagaagaattcaatctaaaactaaaagatccagaatggaaagatagaataagagaaggagcagaattagtcataaaaatacagatggttcctcggggcatagtatttgatctgttgcaagatggaa------------------atcccatatggggaggagtaaaaggactaaattatgatcattcaaacaaaataaaaaagatacttagaactatgaatgagctgaacagaacagtggtaattatgacaggaagagaagc---tagtttcctgcttcctgggtcttctgaagattgggaagcggcactccagaaggaagaaagtctaacacaaatattcccagtaaagttttataggcactcctgcagat------------------ggacctccatatgtgggccagta---agagaaaatctaaccacctactatactgacggaggg------aagaaagggaaaacagctgcagcagtatattggtgtgaaggaaggactaagtcaaaggtatttccagga------accaatcaacaggcggaattgaaggccatatgcatggctctcttggat---ggaccaccaaaaatgaatatcataacagatagtagatacgcctatgagggaatgagagaagaaccagaaacgtgggccagggaaggaatctggctggag---attgccaagatattgccctttaagcagtacgtgggggtcgggtgggtgcctgcacataaagggataggaggaaatacagaggcagatgaaggagtta----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agaaagccttagaacagatggccccgtgtagccctcctgaggccattctattaaaaccaggagaaaaacaaaatctggagacagggatctacatgcaggggcttagaccacaaagcttcctcccaagagcagacttaccagtagccatcacaggaaccatggtagattcagagctacagctacagctacttaacataggaactgagcatataagaatccaaaaagatgaggtcttcatgac------------------ctgtttcctagaaaatatcccctcagccact-gaagatcatga-gagatggcatacctcaccagacattttggttaggcagttccatctccctaagagaatagctaaagagatagtagccagatgccaagaatgt--------------aaaaggacaaccactagcccagtcagaggaacaaaccccagaggtcgattcttatggcagatggacaatactcactggaataaaacaattatttgggtagcagtagagacaaattcaggattagtggaagctcaggtgatccctgaagaaacagcactacaagtagctctctgcattttacagctaatccagagatatacagttcttcacttacatagtgacaacgggccgtgctttactgcacacaggatagaaaatctatgtaagtatctggggatcacaaaaactacgggaataccctacaacccacaatcccagggagttgtagaaagagcccacagagatctaaaagacagattggcagcttatcagggagattgtgaaaccgtagaagcagcccttagcctcgcattagtttctttaaat---aaaaaaagagggggaatagggggccatacaccatatgaaatatacctagaatcagaacataccaaataccaagaccaactagaacaacaattttcaaaacaaaaaattgaaaa----------gtggtgttacgtaaggaacagaagaaaggaa---------tggaaaggaccctacaaagtgttgtgggacggagacgggg----cagcagtaatagag---gaagagggaaaaacagccttatatccacaccgtcatatgcgcttcatcccccccccagattcagatatccaagatgggagttcgtga--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'RELIK_European_Rabbit' --------------------------------------------------------------------------------------------------------------------------------------------------------------------------cgggaaagcggggggcaatgccccccggaccatgatggcgtctgcccagaatatccagtcatctatcccaccatctgccccacccctgggggaaacacagacggaagcccctgcgacagggatctacccgaaacta---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccaaaatagaattaaaacaaagacctaccttaaaggtaaacctaggggggaaagatataatagggctgttagacacaggggctgatttaactataataagggaacaagaggctaaaggaataaaagaagggataacagaaggatggcaaaatatagagggggtgggagggtgctctaaattacaaaaaatatcacaggttacactgaaaga------------caaaaaaggaaggaagacaaagacatccattctaatatccccagatattcccatca------atatatttggaagggatatcttaacaaagttaggggtagccctaa---ttatggcacaact---ctctacccaaattaccccaataaagataaaaatgaaagatcctaataaaggtcccttgattccccaat-ggcctttaaccaaagaaaaattagaaggaattaaggaaataacaaaaagactactagaggaagggaagatatctccagcagacccagataatccctggaacaccccaatatttgtgataaggaaaaaatcaggta---aatggcgaatgttaatagattttagagaacttaataaattagtagataagggaagagaagttcagttaggtattccacaccctggaggattacaaagaagaaaccaggttactgttttggatataggggatgcttattttaccatccctct---ggataaggacttcaggcagtacactgcctttaccatcccagaggttaataatcaaggtccaggccataggtatgtttggaattgcctcccacaaggttttgtattaagtcccttgatttaccaaagtacactaagggacatactagagccctggagacaacaacaccca---gaagtagatctttatcaatatatggatgatatatatattgggtccgatcattctccaaaacaacacaaactgatcatagaaaaactcagaaaaatgcttttagaaaagggattcgagaccccaaatgagaaattacaagaacaatatccctattcatggatggggtacttgttgcacccaaataaatggacattgcaaaaactagagttgccagaacttcc---agagaagcccaccctaaacgaactacaaaagttagtaggactccttaattggatgacccaagctgttcctggaattaagacaaaaccttttactcttatgatgaagggaaaccaagagttaaatagtatcagggaatggacccccgaagcaaga---------------------------------------------------------------------------------------------------------------------------caggagttacggactataaggaggctattacaagaacacaaacctttaagctactgggaccccagcaaggaagtttactgtacagt---tatgatgggaggtaacaccataaattataaagtgcaccaaggatctgata------------tcctttgggtaggtagacaggaatttccaaaggtattagcagcatctcctctaactagagccctaaaatgtctacataaaatcagacaagaatgtattatacgaatagggcaagaacc---tatatataggttacctataaaaaaagaggatttagatgttatgattcaggaagacccctacttgcattgggtacc---acagattgaatgtatccatgtgcctttaatgcttagaagagcactaagcagtcttcaaggtcatcccgtg---------ccaggacctacttactatgttgatggagga------agcaaacaggggcaaggaaaatatggcttttggagatcagatggagttaaactagttaaggagagtgag---ggaagtaatcaagaattagaaaaaagagccatgctactagcccttcaagaa---ggacccccgataatgaatatagttacggattcccaatatgtatatacattaattgaggccagacccctacctgtaaatattgaagaacccttgcttagaaccatactagaagctatagaaagtaaagaagaaatttacatccaatgggtgcctggacataagggaatcccaggcaatgaaaatattgacaaattagtttcacaaataaatacaactcaaataaacctggtagtacaaggtggtcacattaaggaaaaagaaccagaacagattggatactccataagtgccccaaaagatctggtacttatgccaaaggtaatagagacccttaacctacaaacacaaattaccataatcccaggacagtgggggtggataacagaaacatcagagatgactgaggccaaagtaagggtagttggaggtttcatcagcccaggaga-tcaaaatcctttaaagataagattggtcaacctatcccaaaaaatagtatatgtaaaaacaggacaactaatagctcagttaattttaatgcctgtcctccatgac---------------------------------------------------ataagtaaggcaccaaacat------------------cttttttctagaacatattgagacagccacg-gatgatcatgc-taaatggcatagtgatgtgtcatacttgagacaacaattcagcttaccaaaaattgtagcagaacaaataataaagaactgccccaagtgtgtgca---------taaaggaggaactactcctcatattagtagatcagggccaggac--------tgtggcaaatggatgtgacccactatgaggcccggctaattctggtagccattgagacatctactggccttctatgggctaagctaattcctaaggaaactgctcaggaaacagtatggggaatattagaactacagaacctatttcatatccaagcactccatacagataatggccctaacttcacagcagaaagggtcacgggactgtgccaatatttaaatattgatcataccacaggcacaccctataatccacagtcgcagggaatggttgagagagctaatcaatccttaaaacaagaaatggataaatttgctgatgtagttcaaaccattgaagcacggctacaattggctcttatcgcccttaatcaaaagaaaaggggaggaatagggggctatactcctactgaaagatatatccatcagagatggcaagaactagagcaaacgctccaactcca-----gaaatttaaagacaaaaaactctttt-----gcttttatagattaccaaacagtaaagac---------tggaaagggcccactaccatcctttggaaaggagaaggag----cagtagtgatcgacacacctgaaaaggggattattagcttgccccaaagacatgttaggatggttccagccccaggacctcaggatttgggaatttccaattag--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'RELIK_Brown_Hare' -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggtcccttgattccccaat-ggcctttaaccaaagaaaaattagaaggaattcaggaaataacaaaaagactgctcgaggaagggaagatatctccagcagacccagataatccctggaacaccccagtatttgtgataaggaaaaaattaggta---aatggtaaatgttaatagattttagagaacttaataagttagtagataagggaagagaagttcagttaggtattccacaccctggaggattacaaagaagaaaccaggtcactgttttggatataggggatgcttaatttcaccaccccctctggataaaggacttcaggccgtacactgcctttaccatcccagaagttaataatcaagttccaggccataggtatgtttggaattgcctcctacaagcttttgtattaagtcccttgatttaccaaagtacactaagggtattactaagcccttggaaacaccaactccca---gaggtagatctttatcaatatatggatgatatatatattgggtccaatcattctccaaaatatcccaaactgatcgtagaaaaactcagaaaaatgcttt---aaaagggatttgagactccgaatgagaaattacaagaacaatatccttattcatggatggggtacttgttgcacccgaataaatggacattgcaaaaactagagttgtcagaacttcc---agagaagctcaccctaaatgaactacaaaagttagttggactccttaattggatgacccaagctgttcccggaattaagacaaaaccttttactcttatgatgaagggaaaccaagagttaaatagtataagggagtggacccccgaagcaaga---------------------------------------------------------------------------------------------------------------------------caggagttatggattataaagaggctattacaagaacacaaacctttaaactactgggaccccagcaaggaagtttactgtaccgt---tatgatgggaggtaacaccataaattataaagagcaccaaggatctgata------------tcctttgggtaggtagacaggaatttccaaaggtattggcagcatctcctctaactagagccctaaaatgtctacataaaatcagacaagaatgtattatatgaatagggcaagaacc---tatatataggttacctataaaaaaagaggatttagacgttatgattcaggaagacccctacttgcattgggtacc---acagattgaatgtatccatgcacctttaatgcttagaagagcgctaagcagtcttcaaggtcatcccgtg---------ccaggacctacttactatgttgatggagga------agcaaacaggggcaaggaaaatatggcttttggagatcagatggagttaaattaattaaggagggtgag---ggagttaatcaagaattcgtaaaaagagccatgctactagcccttcaagaa---ggactcctgataatgaatatagttacagattcccaatatgtatatacattaactgaggccagacccctacctgtaaatattgaagaacccttgcttagaaccatactagaagctatagaaagtaaagaagaaatttacacccaatgggtgcctggacataagggaatcccaggcaatgaaaatattgacaaattagttt--caaataaatacaactcaaataaacctggtagtacaaggtggtcacattaaggaaaaagaaccagaacagattggatactccataagtgccccaaaagatctagtacttatgccaaaggtaatagagacccttaacctacaaacacaaattatcataatcccaggacagtggggttggataacagaaacatcagagatgactgaggccaaagtaagggtagttggaggtttcatcagcccaggaga-ccaaaatcctctaaaaataagattggtcaacctatcccaaaaaatagtatatgtaaaaacaggacaactaatagttcagttaattttaatgtctgtcctccatgac---------------------------------------------------ataagtaaggcaccaaacat------------------cttttttctagaacatattgagacagccacg-gacgatcatgc-taaatggcatagtgacgtgtcatacttgagacaacaatgcagctcaccaaaaattgtagcagaacaaataataaagaactgccccaagtgtgtgca---------taaaggaggaactactcctcatattagtagatcagggccaggac--------tgtggcaaatggatgtgacccactatgaggcccggctaattctggtagccattgagacatctactggccttctatgggctaagctaattcctaaggaaattgctcaggaaacagtatggggaatgttagaactacagaacctatttcatatccaagcactccatacagataatggccctaacttcacagcagaaagggtcacaggattgtgctgatatttaaatattgatcataccacaggcacaccctataatccacagtcacagggaatggttgagagagctaatcaatccttaaaacaagaaatgaataaatttgctgatgtggttcaaaccattgaagcacggctataattggctcttatcgcccttaatcaaaagaaaaggggagcaat-gggggctatacacctactgaaagatatatccatcagagatggcaagaactagagcaaatgctccaactcca-----gaaatttaaagataaaaaactctttt-----gcttttatagattaccaaacagtaaagac---------tggaaagggcccactacaatcctttgaaaaggagaaggat----cagtagtgattgacacacctgaaaaggggattattagcttgcctcaaagacatgttatgatggttccagccccaggacctcaagacttgggaatttccatttaggaactaatggaatatcaattgcaattatcctgtcaaaagaactcatgtgtttgtaaggtgcttttta-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Prosimian_Immunodeficiency_Virus_pSIVgml_Gray_Mouse_Lemur' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------atcaccggcccctagtgactctgaaggtagggagacaatcggtcaccctcctgatagacaccggggctgacaatacaattatccatcctaaaga------ttggaaaccagtaggaatggaagaggggataattaacatagggggaattggaggttctcaaaaggggatattatacaaacaagtacctattagtct---------------agcagataggcagatacggagaactgtcataagggcag---tgacccctataa------atttactagggagggacaatttagtatcactaggaattggagtagtgatgctaatggcacaaatgtcagtaaaaatagtgccgctgccagttgagttaatgcctggctgtgatgggccaagagtaaaacagt-ggccccttacgcaagagaaatatcaggctcttgctgaaatagtatctaaattagaaaaagagggaaaagtcagtatagcagaggtaagtaatccctacaacactccggtgtttgccattaagaaaaaatcaggca---aatggagaatgctcattgactttcgagtgctaaatgctcgaaccaaaaagggagctgaatttcaactgggcttgcctcaccccgccggcctacaaaaaaaagataatgtcaccatactagatattggtgatgcttattttaccataccatc---ggaccccacatttaaaaagtacactgcctttactctaataccacctaataatcagggaccagccaagagatttgtgtttaattgtctaccacaagggtgggtgtgtagtccagccttttaccaaaggactatgagtgacatcttacaactatggaaacaagctcatctt---gaggtcatgttatatgtctacatggatgaccttctaatcgggacagacctccccttgagggagcatagaaggctggtccaagagcttaggagtatgcttcttggctggagctttgaaactcctgaagaaaacgtgcaggaccagtggccgctacagtagatgggatatgagttacaccctaataattggcagttgcaggtccgaaaattagagttaccaga------tcaccccactttaaatgaagtcccaaaactggtgggaattattaattgggctagtcaaattatttcagggcttaaaataaagaagcttactgctatgatggcagggaatcaggatctcaatagaaagatagaatggactaaggaagctaga---------------------------------------------------------------------------------------------------------------------------aaggaagctgaagaggcagctaagctgctctaggagctcccagcaggggggtatgtcgaccccttgaaacaggtggaggctagaatagcttttgtaggtttcctcgaggtaacctacgacgtccatcaggagaatatca------------tcctttggtgtggcaga---gtagggtccagcaaagcttattgtaa-ccggtggatctgtatgtaaaagcagcaataaaaataggcagggaaaccttgattaggctaggagtggtccc---catactcactgtcccagtagcaaaagatatctgggatagttttgcatggactgcaggggaggtagcatggttccc---agaagtaagacatcaggcacctcctctaatagttgagagatgga---tgaaaatggtatcagaacccatt------aagggggcaagaacttggtatatcgatggatct---aagaaacgggcccaaaaagctagagcaggaatttggacagagggagagaaggcacaagtacaggaactggag---ggctcaaatcaaaaagcagaattggcagccttattgtatgccttacagcag---gaagaccaagaattaaacattatcactgattctcaatatgt------aatgaaagtgctgcgactcgtgccatgggttagcgattctcccttggtgcagagcatcatacaagcagtagagaaaaaacaggctatctatttagattgggtgccaggtcataagggaatcccaggaaatcataaaattgatgaagaaattc------------aatattggcaaggtttggttatccaaggcacaggtatccttcctaaaagagaagaggatgtaggctatgatttacaaattccagaagatgtgtacctgcagggcttggaaaggcggtccgttccgttgaacttgtgagttcaatgggaaaaagaccaatgggggttgattgtggcaaagtcctctatggctcagatgggggtgattcctttaggtggagtcatagattctgggta-tagaggacccatcatcatcatcctatggaatcttaatagaaaggcagtactccttaaagccggaaaaagagtggctcaactagttataatgtctctacttcatgaggagttgcaacaagttcagcaggtcaaaattgacacggcccgaggtgaaggagcatttggttccactggaac------------------ctatttcttggaggccatccctagagcagaa-agtgatcatga-actatggcactcgggggttaaagctctcatgcaggattttggaatatctcaaatggtggctaaagccatcgtgcataaatgtcctaattgccaagg---------gaaagggtctgccattacaggggtggtggattacaccccgggga--------catggcagatggatgttacccactgggaaggacataaactgttagtagcagttgagactgcttctgggttaacatgggctaaaactatccctgatgaaacagccaaaaccactttgttggctacattagaactgcacagtgttttcaaagtgagtcatttacatacagataatgggcttaatttcactgctgaaagatttactaatgctcttgcctggttaggcattaagcactccacaggcatcccctataattctcactctcaaggggtagtggaatctaccaataagttgttgaaagaaatgctccacaaaattagacccaaaatggagacagttcacgcggctgtctatatggctttatttgtcattaattttaaacaaaggggtggagtgggaggtacaactagatatgaaagacatttagacatgggattggaagacttacaaaattaccatttcaaaaa----------------------------tttggactcgtaccatgtttactttaaacagccacctcaaaaaacctggcagggaccagctcgtctcctttataaggggcagggag-------cagtggtctgcgaggatcaaggaaagacaatagcagtacctagacgctactgcaagatcataacaggaggggaatag--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Prosimian_Immunodeficiency_Virus_pSIVfdl_Fat_Tailed_Dwarf_Lemur' ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaaacgggaggaggagcccatcaggggccccactagagatgacagcagtgcagccctctgcaccagaacctcccccagggggggggagatggggttg-----------------------------------------------------------------------------------------------------taccccaccctcaaggaattattaaattagatcaccRgcccctggtgactctgaaggtaggggRacaatcggtcaccctcctgatagacaccggggctgacMatacaattatccaccctaaaga------ttggaaaccagtaggaatggaagaggggataattaacattgggggaattggaggttctcaaaagggggtattatacaaacaagtgcctattactct---------------agcagataggcagatacRgggaactgtcataagggcag---tgacccYtataa------atttRctagggagggacaatttagtatcactaggaattggagtagtgatgctaatggcacagatgtcaRtMaaaatagtgccgctgccagttgagttaatgcctggctgtgatgggccaagagtaaaacagt-ggccccttacgcaagagaaatatcaggctcttgctgRRatagtatctaaattagaaaaagagggRaaagttagtWgagcagaggtaggtaatccctacaacactccggtgtttgccattaagaaaaaatcaggca---aatggagaatgctcattgactttcgagtgctaaatgctcgaaccaaaaagggggctgaacttcaRctgggcttgccccacccggcaggcctacaaaagaaagataatgtcaccatactagatattggtgatgcttattttaccataccatt---agaccccacatttaagaagtacactgcctttactctgataccacctaataatcagggaccagccaggagatttgtgtttaattgtctaccacaagggtgggtgtgtagtccagccttttactaaaggactatgagtgacatcatacagccatggaaacaagctcatcct---gaggtcatgttgtatgtctacatggatgaccttctaatcgggacagacctccccttgagggagcatagaaggctggtccaagagcttaggagtatgcttcttggctgaggctttgaaactcctgaagagaaagtgcaggaccaatggccactacagtggatggggtatgagttacaccctaataagtggcagttgcaggtccgaaaattagagttaccaga------tcaccccactttaaatgaagtccaaaaactggtgggaattattaattgggctagtcaaattatatcagggcttaaaataaagaagcttgctgctatgatggcagggaatcaggatctcaatagaaagatagaatggactaaggaagccaga---------------------------------------------------------------------------------------------------------------------------aaggaagctgaagaggcagctaagctgctccaggagctcccagcaagggggtatgtcgaccccttgaaacaggtggaggctagaatagcttttgtaggtttccgcgagatagcctatgacgtccatcaggagaatatca------------tcctttggtgtggcaga---gtagggtccagcaaagctcattgtaatccggtggacctatgtgtaaaagcagcaataaaaataggcagggaaaccttgattaggccaggagtggtccc---catacttactgtcccggtagcaaaaaatatctgggatagttttgcatggactgcgggggaggtagcatggttccc---agaagtaagacatcaggcacctcct-taatagttgagaagtgga---tgaaaatggtgtcagaacccatt------aagggggcaagaacttggtatatcgatggatct---aagaaaYggggccaaaaagctagagcaggaatttggacagagggagagaaggcacaagtacaggaactggag---agctcaaatcaaaaagcagaattggcagccttgttgtatgccttacagcag---gaagacaaagaattaaacattatcactgattctcaatatgt------aatgaaagtgatgcgacgcgagctatgggtcagcgattctcccttggttcagagcatcatacaagcagcagagaaaaaacaggctatctatttagattgggtgccaggtcataagggaatcccaggaaatcagaagattgatgaagaaattc------------aaaattggcaaggtttggttatccaaggcacaggtatccttcctaaatgagaagaggatgtaggctatgatttacaaattccagaagatgtgtacctgcagggcttagaaaggcggtccattccattgaacttgcgagttcaatgggaaaaagaccaatgggggttgattgtggcaaagtcctctatggctcagatgggggtgattcctctaggtggagtcatagattctggata-tagaggacccatcatcctcatcctatggaatcttaataggaatgcagtactccttaaggccggaaaaagagtggctcagctagttataatgtctctatttcatgaggagttgcaacaagttcagcaggtcaaaattgacacggcccgaggtgaaggagcatttggctccactggagc------------------ctatttcttggaggctatccctagagcagaa-agtgatcatga-actatggcactcgggggttaaagctctcatgcaggattttggaatgcctcgcatggtggctaaagccatcgtgcaaaaatgtcctgattgccaagg---------gaagggatcagccattacaggggtggtggattacaccccgggga--------catggcagatggatgttacccactgggaaggacataaactgttagtagcacttgagactgcttctgggttaacatgggctaaaattatccctgatgaaacagccaaaaccactttgttggctacattagaactgcacagtattttcaaagtgagtcacttacatacagataatgggcctaatttcactgctgaaagatttactaatgctcttgcctggttaggcattaagcactccacaggtatcccctacaatcctcaatctcaaggggtagtggaatctaccaataagttgttaaaagaaatgctccacaacattagacccaaaacggagacagttcaYgYggctgtctatatggctttRtttgccattaatYttaaacaaaggggtRgagtgggaggtacaactagatatgaaagRcatttagacaYgggaYtggaagacYtacaaaattaccaYttcaaaaa----------------------------tttggactcataccatgtctactttaaacagccacctcaaaaRacctggcagggaccRgctcgtctcctttataaggggcagggag-------cggtggtctgcgagcatcagggaaagacaatagcagtacctagacgctactgcaagatcRtaacgggagtttctgattccctctctgcagatggatag------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Prosimian_Immunodeficiency_Virus_pSIVmb_Mohol_Bushbaby' ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gagggagagaaggcacaagtacaggaactggag---ggctcaaatcaaaaagcagaattggcagccttattgtatgccttacagcag---gaagaccaagaattaaacattatcactgattctcaatatgt------aatgaaagtgctgcgactcgtgccatgggttagcgattctcccttggtgcagagcatcatacaagcagcagagaaaaaacaggctatctatttagattgggtgccaggtcataagggaatcccaggaaatcataaaattgatgaagaaattc------------aatattggcaaggtttggttatccaaggcacaggtatccttcctaaaagagaagaggatgtaggctatgatttacaaattccagaagatgtgtacctgcagggcttggaaaggcggtccgttccgttgaacttgtgagttcaatgggaaaaagaccaatgggggttgattgtggcaaagtcctctatggctcagatgggggtgattcctttaggtggagtcatagattctgggtattggaggacccatcatcatcatcctatggaatcttaatataaaggcagtactccttaaagccggaaaaagagtggctcaactagttataatgtctctacttcatgaggagttgcaacaagttcagcaggtcaaaattgacacggcccgaggtgaaggagcatttggttccactggaac------------------ctatttcttggaggccatccctagagcagaa-agtgatcatga-actatggcactcgggggttaaagctctcatgcaggattttggaatatctcaaatggtggctaaagccatcgtgcataaatgtcctaattgccaagg---------gaaagggtctgccattacaggggtggtggattacaccccgggga--------catggcagatggatgtt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 4345; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 'Equine_Infectious_Anemia_Virus', 2 'Equine_Infectious_Anemia_Virus_Strain_Liaoning', 3 'Feline_Immunodeficiency_Virus_FIVPcoB_Puma_Subtype_B', 4 'Feline_Immunodeficiency_Virus_FIVPcoA_Puma_Subtype_A', 5 'Feline_Immunodeficiency_Virus_FIVfca_Domestic_Cat_Subtype_C', 6 'Feline_Immunodeficiency_Virus_FIVfca_Domestic_Cat_San_Diego_Isolate', 7 'Feline_Immunodeficiency_Virus_FIVoma_Palla''s_Cat', 8 'Maedi-Visna_Virus', 9 'Ovine_Lentivirus', 10 'Caprine_Arthritis_Encephalitis_Virus', 11 'Simian_Immunodeficiency_Virus_SIVsyk_Syke''s_Monkey', 12 'Simian_Immunodeficiency_Virus_SIVtal_Gabon_Talapoin', 13 'Simian_Immunodeficiency_Virus_SIVtal_Angolan_Talapoin', 14 'Simian_Immunodeficiency_Virus_SIVgsn_Greater_Spot_Nosed_Monkey', 15 'Simian_Immunodeficiency_Virus_SIVmus_Mustached_Guenon', 16 'Simian_Immunodeficiency_Virus_SIVmon_Mona_Monkey', 17 'Simian_Immunodeficiency_Virus_SIVden_Dent''s_Mona', 18 'Simian_Immunodeficiency_Virus_SIVdeb_De_Brazza''s_Monkey', 19 'Simian_Immunodeficiency_Virus_SIVrcm_Red_Capped_Mangabey', 20 'Simian_Immunodeficiency_Virus_SIVdrl_Drill', 21 'Simian_Immunodeficiency_Virus_SIVmnd2_Mandrill', 22 'Simian_Immunodeficiency_Virus_SIVcpz_Chimpanzee', 23 'Human_Immunodeficiency_Virus_HIV_1_Group_M', 24 'Human_Immunodeficiency_Virus_HIV_1_Group_O', 25 'Simian_Immunodeficiency_Virus_SIVagmSab_African_Green_Monkey_Grivet', 26 'Simian_Immunodeficiency_Virus_SIVagmTan_African_Green_Monkey_Tantalus', 27 'Human_Immunodeficiency_Virus_HIV_2', 28 'Simian_Immunodeficiency_Virus_SIVsmm_Sooty_Mangabey', 29 'Simian_Immunodeficiency_Virus_SIVsun_Sun_Tailed_Monkey', 30 'Simian_Immunodeficiency_Virus_SIVlhoest_Lhoests_Monkey', 31 'Simian_Immunodeficiency_Virus_SIVcol_Mantled_Guereza', 32 'Jembrana_Disease_Virus', 33 'Bovine_Immunodeficiency_Virus', 34 'RELIK_European_Rabbit', 35 'RELIK_Brown_Hare', 36 'Prosimian_Immunodeficiency_Virus_pSIVgml_Gray_Mouse_Lemur', 37 'Prosimian_Immunodeficiency_Virus_pSIVfdl_Fat_Tailed_Dwarf_Lemur', 38 'Prosimian_Immunodeficiency_Virus_pSIVmb_Mohol_Bushbaby'; TREE 'Lentivirus_pol_plus_pSIVmb' = (2:0.13305,1:0.10046,((35:0.04224,34:0.0)1.00:0.72218,(((33:0.45486,32:0.09068)1.00:0.88389,(10:0.18956,(9:0.11576,8:0.12551)0.98:0.07309)1.00:0.75206)0.99:0.19999,((3:0.3565,(((6:0.09338,5:0.09624)1.00:0.21472,7:0.15833)0.50:0.04733,4:0.36557)0.83:0.08002)1.00:0.30311,((37:0.01441,(38:0.00219,36:0.00104)1.00:0.02609)1.00:0.77549,(((((((17:0.35078,18:0.3414)0.93:0.06444,(13:0.40525,((16:0.27492,(15:0.24246,14:0.23113)0.99:0.07779)0.98:0.12506,12:0.45506)0.00:0.00803)0.74:0.03909)0.67:0.04407,11:0.4637)1.00:0.09081,((28:0.1441,27:0.12524)1.00:0.27471,(25:0.22524,((24:0.20661,(23:0.17116,22:0.13616)1.00:0.07684)1.00:0.17359,((21:0.15349,20:0.15419)1.00:0.09994,19:0.19079)0.99:0.06176)0.98:0.06371)0.98:0.0776)0.96:0.04727)0.60:0.04493,26:0.34552)0.86:0.05131,31:0.62675)0.78:0.06581,(30:0.20019,29:0.26252)1.00:0.20267)1.00:0.47802)0.63:0.11246)0.89:0.07593)0.97:0.1042)1.00:0.90866); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 4345; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 4345; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1400245898689; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2904202221324972756; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5538060791235546090; mqVersion 275; checksumv 0 3 1470267045 null getNumChars 4345 numChars 4345 getNumTaxa 38 numTaxa 38 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 2037372.0 sumSquares -5.132575954208761E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1024 652; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2904202221324972756 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2904202221324972756; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 924 585; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 924 585; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2904202221324972756 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 840.1400245390214.4901117860451407249; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 924 585; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5538060791235546090 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 924 585; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;