NEXUS
[File created by TreeBASE:  7/26/07  21:13:08]
[Matrix accession#: M2755]

BEGIN TAXA;
	TITLE M2755;
	DIMENSIONS  NTAX=85;
	TAXLABELS
		Ursus_arctos	Ursus_maritimus	Ursus_americanus	Ursus_thibetanus	Helarctos_malayans	Melursus_ursinus	Tremarctos_ornatus	Ailuropoda_melanoleuca	Procyon_lotor	Procyon_cancrivorous	Nasua_narica	Nasua_nasua	Bassariscus_astutus	Potos_flavus	Ailurus_fulgens	Mephitis_mephitis	Spilogale_gracilis_latifrons	Conepatus_mesoleucus	Enhydra_lutris	Lontra_canadensis	Martes_pennanti	Martes_americana	Gulo_gulo	Mustela_vison	Martes_zibellina	Mustela_ermina	Mustela_putorius_furo	Mustela_frenata	Mustela_nivalis	Mustela_putorius	Mustela_sibirica	Mustela_eversmannii	Mustela_itatsi	Mustela_lutreola	Martes_flavigula	Martes_foina	Martes_martes	Martes_melampus	Mustela_altaica	Taxidea_taxus	Meles_meles_meles	Arctonyx_collaris	Meles_meles_anakuma	Melogale_moschata	Arctocephalus_australis	Arctocephalus_forsteri	Otaria_byronia	Eumetopias_jubatus	Arctocephalus_gazella	Odobenus_rosmarus	Cystophora_cristata	Erignathus_barbatus	Hydrurga_leptonyx	Lobodon_carcinophagus	Mirounga_angustirostris	Mirounga_schauinslandi	Monachus_monachus	Phoca_hispida	Ommatophoca_rossii	Phoca_groenlandica	Halichoerus_grypus	Phoca_vitulina	Leptonychotes_weddelli	Phoca_largha	Phoca_caspica	Canis_familiaris	Canis_lupus	Alopex_lagopus	Vulpes_velox	Felis_domesticus	Lynx_canadensis	Puma_concolor	Panthera_tigris_altaica	Lynx_rufus	Panthera_leo	Aonyx_capensis	Amblonyx_cinereus	Lutra_lutra	Pteronura_brasiliensis	Lontra_felina	Lontra_longicaudis	Lutra_maculicollis	Galictis_vittata	Ictonyx_striatus	Eira_barbara
	;
END;

BEGIN CHARACTERS;
	TITLE M2755;
	DIMENSIONS NCHAR=39;
	FORMAT SYMBOLS = " 0 1 2 " MISSING = ? GAP = - ;
	MATRIX
		Ursus_arctos                       1??????????????????????????????????????
		Ursus_maritimus                    101001?01101110111100101011110100111010
		Ursus_americanus                   101001?01101110111100101011110100111010
		Ursus_thibetanus                   1??????????????????????????????????????
		Helarctos_malayans                 101001?01101110111100101011110100111010
		Melursus_ursinus                   101001?01101110111100101011110100111010
		Tremarctos_ornatus                 1??????????????????????????????????????
		Ailuropoda_melanoleuca             1??????????????????????????????????????
		Procyon_lotor                      100000011001110101110101011110100111010
		Procyon_cancrivorous               1??????????????????????????????????????
		Nasua_narica                       100000011001110101110101011110100??1010
		Nasua_nasua                        1??????????????????????????????????????
		Bassariscus_astutus                100000011001110101110101011110100111010
		Potos_flavus                       100000011001110111110101011110110111010
		Ailurus_fulgens                    100000011001110111100101011110100111010
		Mephitis_mephitis                  100000011001110111000101?01?0??????????
		Spilogale_gracilis_latifrons       100000011101110111000101?01?002?0011010
		Conepatus_mesoleucus               100000011001110111000101?01?002?0011010
		Enhydra_lutris                     100000011001100110100101011110100111010
		Lontra_canadensis                  100000011001100110100101011110100111010
		Martes_pennanti                    ?00000011001100110100101011110100111011
		Martes_americana                   100000011001100110100101011110100111011
		Gulo_gulo                          100000011001100110100101011110100111011
		Mustela_vison                      000000011001100110100101011110100111010
		Martes_zibellina                   1??????????????????????????????????????
		Mustela_ermina                     000000011001100110100101011110100111010
		Mustela_putorius_furo              000000011001100110100101011110100111010
		Mustela_frenata                    000000011001100110100101011110100111010
		Mustela_nivalis                    000000011001100110100101011110100111010
		Mustela_putorius                   0??????????????????????????????????????
		Mustela_sibirica                   0??????????????????????????????????????
		Mustela_eversmannii                0??????????????????????????????????????
		Mustela_itatsi                     0??????????????????????????????????????
		Mustela_lutreola                   0??????????????????????????????????????
		Martes_flavigula                   1??????????????????????????????????????
		Martes_foina                       1??????????????????????????????????????
		Martes_martes                      1??????????????????????????????????????
		Martes_melampus                    1??????????????????????????????????????
		Mustela_altaica                    0??????????????????????????????????????
		Taxidea_taxus                      100000011001100110100101011110100111?10
		Meles_meles_meles                  100000011001100110100101011111100111110
		Arctonyx_collaris                  100000011001100110100101011111100111110
		Meles_meles_anakuma                1??????????????????????????????????????
		Melogale_moschata                  100000011001100110100101011110100111010
		Arctocephalus_australis            10000101110011011110110101111011010100?
		Arctocephalus_forsteri             1???0101110011011????????????011010100?
		Otaria_byronia                     10000101110011011110110101111011010100?
		Eumetopias_jubatus                 10000101110011011110110101111011010100?
		Arctocephalus_gazella              1???0101110011011????????????011010100?
		Odobenus_rosmarus                  10000101110011011110110101111011010100?
		Cystophora_cristata                10000101010111011110010101111011011100?
		Erignathus_barbatus                10000101010111011110010101111011011100?
		Hydrurga_leptonyx                  10000101110111111110010101111??????????
		Lobodon_carcinophagus              10000101110111111110010101111011011100?
		Mirounga_angustirostris            10000101110111111110010101111011011100?
		Mirounga_schauinslandi             10000101110111111110010101111011011100?
		Monachus_monachus                  10000101110111111110010101111011011100?
		Phoca_hispida                      10000101010111011????????????011011100?
		Ommatophoca_rossii                 1???0101110111111110010101111011011100?
		Phoca_groenlandica                 10000101010111011110010101111011011100?
		Halichoerus_grypus                 10000101010111011110010101111011011100?
		Phoca_vitulina                     1000?????????????110010101111??????????
		Leptonychotes_weddelli             1000?????????????110010101111011011100?
		Phoca_largha                       10000101010111011110010101111011011100?
		Phoca_caspica                      1???0101010111011110010101111??????????
		Canis_familiaris                   110011111101110011100110011010??????010
		Canis_lupus                        110011111101110011100110011010011??0010
		Alopex_lagopus                     110011111101110011100110011010011??0010
		Vulpes_velox                       1???1111110111001??????????????????????
		Felis_domesticus                   100101011011010111100001010?1??????????
		Lynx_canadensis                    100101011011010111100001010?10011??0010
		Puma_concolor                      100101011011010111100001010?1??????????
		Panthera_tigris_altaica            100101011011010111100001010?1??????????
		Lynx_rufus                         100101011011010111100001010?1??????????
		Panthera_leo                       10010101101101011???0001010?1??????????
		Aonyx_capensis                     ?00000011001100110100101111110100111010
		Amblonyx_cinereus                  ?00000011001100110100101111110100111010
		Lutra_lutra                        ?00000011001100110100101011110100111010
		Pteronura_brasiliensis             ?00000011001100110100101011110100111010
		Lontra_felina                      ?00000011001100110100101011110100111010
		Lontra_longicaudis                 ?00000011001100110100101011110100111010
		Lutra_maculicollis                 ?00000011001100110100101011110100111010
		Galictis_vittata                   ?00000011001100110100101011110100111010
		Ictonyx_striatus                   ?00000011001100110100101011110100111010
		Eira_barbara                       ?00000011001100110100101011110100111011
	;
END;

BEGIN ASSUMPTIONS;
CHARSET IRBP = 1 ; 
 CHARSET RHO = 2 - 4 ; 
 CHARSET FES = 30 - 39 ; 
 CHARSET GHR = 5 - 17 ; 
 CHARSET CHRNA = 18 - 29 ; 
 CHARSET GAPS = 1 - 39 ; 
 TAXSET CATS = 70 - 75 ; 
 TAXSET CANID = 66 - 69 ; 
 TAXSET NOIRBP = 21 57 62 67 76 - 85 ; 
 TAXSET NOSTS = 1 4 7 - 8 10 12 25 30 - 39 43 ; 
 TAXSET NORHO = 46 49 59 65 69 ; 
 TAXSET NOGHR = 62 - 63 ; 
 TAXSET NOCHRNA = 46 49 58 69 ; 
 TAXSET NOFES = 16 53 62 65 69 - 70 72 - 75 ; 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;