NEXUS [File created by TreeBASE: 7/26/07 21:13:17] [Matrix accession#: M2764] BEGIN TAXA; TITLE M2764; DIMENSIONS NTAX=57; TAXLABELS Woodfordia_fruticosa Pleurophora_saccocarpa Pehria_compacta Lythrum_lineare Cuphea_wrightii Cuphea_watsoniana Cuphea_utriculosa Cuphea_urens Cuphea_thymoides Cuphea_teleandra Cuphea_subuligera Cuphea_strigulosa Cuphea_splendida Cuphea_spermacoce Cuphea_spectabilis Cuphea_sessilifolia Cuphea_sessiliflora Cuphea_schumannii Cuphea_salvadorensis Cuphea_repens Cuphea_racemosa Cuphea_pulchra Cuphea_pseudovaccinium Cuphea_pseudosilene Cuphea_procumbens Cuphea_pascuorum Cuphea_parsonsia Cuphea_nitidula Cuphea_mimuloides Cuphea_micropetala Cuphea_melvilla Cuphea_melanium Cuphea_lutescens Cuphea_llavea Cuphea_ingrata Cuphea_ignea Cuphea_heterophylla Cuphea_glutinosa Cuphea_gaumeri Cuphea_fuchsiifolia Cuphea_flavisetula Cuphea_flava Cuphea_ericoides Cuphea_epilobiifolia Cuphea_disperma Cuphea_denticulata Cuphea_decandra Cuphea_cyanea Cuphea_circaeoides Cuphea_carthagenensis Cuphea_calophylla Cuphea_brachypoda Cuphea_bahiensis Cuphea_axilliflora Cuphea_appendiculata Cuphea_angustifolia Cuphea_acinifolia ; END; BEGIN CHARACTERS; TITLE M2764; DIMENSIONS NCHAR=803; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Woodfordia_fruticosa --------------------TCGAATCCCGCAAAAGCAGAACGACC-GGAGAA-CTAGTTACAACAAAAG-CT-GCTGGGGG---A--GA----CCCTC-TCCCGGCC-----CTGCC-GGGAT-GACGGGGG---CGC---TC-GTCGC-CTCCGTGATCCCGG--ACGT-A-CAACAAAA---CCCGG--CGC---GGAAGGCGCCAAGGAA------CA-GATACAAGG-AGC-GGC--GCACTGGCC--CGACGCCTTC--CCC-ATCAC--GCGG-----G-ATGACGG---AGCGGCCGTGCCCT---CTCTT-CGAGT-------GTTT-AACCACAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAA-GCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AA-----CTCCCCCCGAA--TG------------------GGGCGC-GGAAAATGGCCTCC-CGTGGCGT-GG-AGCTGCGGCTGGCCCAAAAAA-TGAGCACGGGAGCGGCGTA-TTCCGCGACGCGCGGT-GGTGG-TAATTGT---CCCC-CTCGGGCATC-AGTCCGGAGCGCCCTTCCCAAATGCT--GCTCGG-TGGGCC-TTCCATCCAACGAAC--------------------------------------------------- Pleurophora_saccocarpa ----------------TTGTCGAAACCTGCAAA--GCAGAACGACCC-GAGAA-CTAGTTCCAAA------CCCGTCGGGGG---AGTT--CCTCCCCC-G-ATGGG-----CTGG----GAT--GACGGGCGGCCTTGT-GTCAGTGAT-CT---------CGGC--CGT-AGTACCAAA----CCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAG-AGAGG------ACACG---TTCCCCTTACCCACCCACCGTCCGGCGGG---ATGTGATAGG-----C-T-T-CG-TGACG--CCT--CGAATG------TTTCAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAA---CGTAGCGAAATGCGATACTTGGTG--AATTGCAGAATCCCGG-AATCATCGAGTCTTTGAACGCAAGTTGCGCC-GAA-GCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAACTCCC-CT----AA-TCGGG-----AGAC--------GGAGC-GGAAGATGGCCTCC-CGTGGCGT-AG-AGTTGCGGCTGGCCTAAATTT--GAGCACGGGAGCGGCGTATTT-CGCGACGCGCGGT-GGTGG-TAATTTCG---CCC-CTCGGGCATC-AGTCCGGAGCGCCCTTCCCCCTAGC--TGCTCGA-TGGCC--TTCTATCCAACGACCGCGACCCCA-GGCCAA--GCGGGGCCT------------------------ Pehria_compacta ----------------TCGAATCCTGCAAA-----GCAGAACGACCC-GAGAA-CTAGTTACACCAAAAG-CC-GCTGGGGG---AG----CCCCTCTC-CCA-G-------CCCGTC-GGGTT-GACGTGGG---CGC---TC-GTCGC-CTCTGTCATCCCG--TACGT-A-CAACAAAA---CCCGG--CGC---GGAAAGCGCCAAGGAAAA----GA-GATACAAGG-AGA-GGT--GCACGGGC-T----------CGATGCCATCCCCC-------ATC-AT-GCGGG---ATGG---CGGAGCGC-CCGTG-CCG-TCTCGAGTGTTTTAACCACAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAA-GCCATCTGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AA--CTCTCACTCG-----------------AATT-----GGGCGC-GGAAGATGGCCTCC-CGTGGCGCAGT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCGCGGT-GGTGG-TAATGTCG--CCCC--TCGGGC-ATCAGTCCGGAGCGCCC--TTCCCCAATGCTGCTCGG-TGGCC--TTCCATCCAACGAA-C-------------------------------------------------- Lythrum_lineare TGCGGAAGGATCATTGTCGAATCCTGTC----------GAACGACCC-GTGAA-CTTGTGATTAT--AT--CC-CCGGGATGG-TATGTGCGCACTGTT-GCATG---------CATC--AA---------------------------------------CCGG--TTGT-AC-AAC---GTACCCCGG--CGC---GGAAGGCGCCAAGGAT------CAA--TATAAGAGCA-------GCACGAGCC-----------CGAACGCATCCC-------------TTAATGGG---ATGT---CGGGAAGACTCGTG-CCA-TCTC---AATCGTAACAACAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCAAA-GC--TTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCATGTCGCCCCTGAGACCCTCGCCTCCCTCCCGTCC---CGGAGTGTGGCCAGTGCTA-GGGCGC-GGAAGATGGCCTCC-CGTTGCATCC-C-GCTGCGGCTGGCCTAAAAGA--GAGCATGGGAGCGACGTA-CTCCGCGGCGCGCGGT-GGTGG-TAATATCG--CCCC--TCGGGC-TAGTGTCCGGA-CTGTCT-CTCCC--TCGTTGCTCGG-TGGCC--TTACACTCAACACATGCGACCCCA-GGTCA--GGCGGGACTACCCGCTGAGTTTAA---------- Cuphea_wrightii ---------------------------------TAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCG-AGGG---ACTA----CCCTC-G-ACA--AAAGAGCCATCT-GAT--GACGGCAA-CG-GCTT-CC-TTTGT-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGC-AAGGAA------CAAA-TACAAAG-CGA-GGA--CTGCCTACCTT-CT-G-TCT---TACCCTTTT----GGG----CTACGATGG----TTGGCT-TGAGCA---TCCT--CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGGCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCATCTCGCCGC--------CAAAA---CACCCACTTGT--GG--T---GTAT-------GGGAGC-GGAAAATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAC--AATCTGCTCGA-CGGGCCTTTGCACTCAACCGACGCGACCCCA-GGTCA--GGCGGGGTTACC---------------------- Cuphea_watsoniana ----ATRSSGAAGGACATTGTCGAATCCTGCACAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGCATTTT--GTCGGGGG---ACTC-----CCCTC-G-ATA--AAAAAGCCATC--GAT--GACGGCAG-C--GACTGTC-GCTAC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAGCGTT-GA---TAACCGGCC-T--CT--CGTC-GCACCCGTCT----GGG-------TTACGA-TGACTGGCT-CGGGCA---TC-TT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTTGT---GG-T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCTCGA-C-GCTGCGGTTGGCCTAAAAA---GAGCACAGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTT-CCCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-GGATTTGCTCGA-CGGCC--TTCCACTTAACAAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTGAAT-------------- Cuphea_utriculosa ------------------------------------------------------CTAGT-AACAAGTAT--CT-GTCGCYYG---AGTCA-CTCCCCTC-NBBCA---AAAAGCCATC--GAT--GACG-CG--C-CGCTCRTC-GT-GT-CATGATTGT---GGT--CGT-ACCA--AAAAT-A-CCGG--CGC---GGAAGGCGC-AAGGAA------CATG-TACACTC-AGA-GGC--GCACCGGCCTT-CAC---GGC-ATGCCCGTT-----GGG----CAATGACGG----AAGGCT-CGGTCG---TCCT--CAAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACTTCGCCCC--------AACAAAAAATCSSSSSSSS--GGG-T------C-------GGGAGC-GGATGTTGGCCTCC-CGTGGCGCAT-C-G-TGCGGCTGGCCTAAAAGT--GAGTACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAATTATT------------------------------------------------------------------------------------------------------------------------------ Cuphea_urens -GAACTGCGGAAGGACA-TGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAA-C-AGTAATCAATGATT----GTCATGGG---AATTTTT--CCCTT-G-GCA---AAAAGCCATC--GGT--GACGGTGGG--CGCTTGTC-GCTCC-TGTCATAGT---GGC--CGT-ACTAA-AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGA-GGA--GCACCAGCC-A-CTCGTT----GTCTCCCATC----GGG----TTACGACGG----ATGGCT-AGGGCA---TCCT--CGAAT-------TATAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GAAAGATGGTCTCC-CGTGGCGC-ATC-GTCGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-TGTCCGGAGCGGCCT-CCCAT-GGAACTGCTCGA-TGGCC--TTCCATTCAACAAACGCGACCCCA-GGTCA--GGCGGGGCTAACCGCTGATTTAAG---------- Cuphea_thymoides -----------------------------------GCAGAACGACCA-GAGAA-C-CGTAAACAAGAAAA-CT-GTCGTTGGG---CTT-----CAAC--G-ACA---AAAAGCCACT-CGGTT--CCGGCGG---TGCATGTC-GCTGT-CGTGACCGTTT-GGC--CGT-ACC---AAAA--ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAATAGTT-GGA--TCACAAGCC-T-CCC---GTC-GTCTCCATTT----GG-----CGACGACGG----ATGGCT-CGGTGA---TCCT--CCAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAAA--TCCTACCA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCGGCGTAA-TCCGCGACGCACGGT-GGTGG-TAATTGTTTCCCTC-CTSGGGCATC-AGTCCGGAGCGABBB-KCCAT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA-G-TCA--G--------------------------------- Cuphea_teleandra --------------------------------------GAACGACCA-GAGAA-CTAGTTAACAACGAT--CT-GTTGGAGG---TATC-----CCTTT-G-ACAG---AAAGCCACC--GAT--GACGGTGGG--TGCCCGTC-GCTCC-CGTCACCGCT--GG--TCGT-ACT---AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CGAG-TACGAATGTA--GGA--GCGCCAGCC-T-CCT---GCTTGTCCCCCTTTC---GGG----CGACGACGG----ATGTCT-CGGTCA---TCCT--CTAAT------ATTTCAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCCCCCG-ACGGCATTCGGCCGAGGGCACGTCTTTCTGGGTGT-CACGGATCACGTCGCCCC--------AAA----TATCCTACCAA--CG--AT---ATTC-------GGGAGC-GGAAGATGGTCTCC-CGTTGCGCACT--GCCGCGGCTGGCCTAAAAC-ATGAGCAAGGGAGCGGCGTA-TTCCGCGACGCACGGC-GGTGG-TAACTCT--CCCCC-CTCGGGCAAC-AATCCTGAGCGGCCT-CCCAT-CTATAAGCTCGA-CGACCC--TCCTTTCAACGAACGCGA-CACAAG-TCAA-G--------------------------------- Cuphea_subuligera -------------------------------------------------------TAGTTAACAAGCATTTT--GTCGGGGG---ACTC-----TCCTC-G-ATAAAAAAAAGCCATT--GAT--GACGGCAA---CGTTTATC-GCTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAGCGTT--GA--TAACCGGCC-T-CTCGTC----ATACCCATCT----GGG----TTATGACGA----TTGGCT-CGGTCA---TC-TT-CGAAT------AAATTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCC-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TCCCCCCTTGT--GG--T---GTAT-------GGGAGC-GGAACATGGTCTCC-CGTGGCGGAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TACCGCGACGCACGGT-GGTGG-TAATATTTC-CCCC-TTGGGGCACC-AGTCCGGAGCGGCCT-CCCAT-TTATTTGCTCGA-CGGCC--TTCCACTCAACAAACGCGACCCCA-GGTCAA-GGGGGGGCT--CCCCCG----------------- Cuphea_strigulosa -----------------------------------GCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTTT--GTCGGGGGG-AAATC-----CCCTC-G-ATAAAAAAAAGCCATT-CGAT--GACGACAA---TGCTTGTC-GTTGC-CGTCATTGT---GGC--CGT-ACT---AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGAGGGA--CTACCAGCC-T-CTC---GTC-GTCCCTTTCT----GGG----AGACGACGTG----TGGCT-CGGGCC---TCCTTT--AAT------ATTATAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCTGCTAG--CGGG-T---CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAAATCTTC-CCCC-TTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATTCAACGAACGCGACCCCA-GGT-------------------------------------- Cuphea_splendida -------------------------------------AGAACGACCA-GAGAACC-AGTTAACAA----------------------------------------AAAAATAGCCATC--GGT--GATGGGCGG--CGCTCGTC-GCCCC-CATGATCGT---GGC--CGT-ACCT--AAAAA-CCCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAG-AGAGGG---CTACCGGCCTT--TT---G----------------------------------------GCT-CGGGAA---CCCTT--GAAT------GTTAATAACAAAAA-CGACTCTCGGCAA-GGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCATCGA---GG-AT-----AC-------GGGAGC-GGAAGATGGCCTCC-CGTAGCG-AACCAGCTGCGGATGGCCTAAATAT--GAGCATGGGAGCGACGCA-TTCCGCGACGCACGGT-GGTGG-TAATTTGTT-CCCC-CTCGGGCATC-AGTCCGGATCGGCCT-CCCGTTGAA-CTGCTCGA-CGGCC--TTCAATCCAACGAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTAGTTTAAG---------- Cuphea_spermacoce -----------------------------------GCAGAACGACCA-GAGAA-CTAGTTAACAACGATTT---GTCGGGGGGG-ACTC-----CCCTC-G-ATA--AAAAAGCCATT--G-TT-GACGGCGA---TGCTCGTC-GTTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGA-GGA--CGACCGGCC-T--CT--TGTC-GTCCCTTTTC----GGG-------TGATGACG-TGTGGCT-CGGGCC---TCCT--CGAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTTGGCTGAGGGCACGTCTGCCTGGGTGTGCACGCATCACGTCGCTCC--------AAAA-----TCCCCCTAG--CGG-TT---GTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGTAAT--GCTGCGGCTGGCCTAAATATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAATTTCTTCCCCC-CTCGAGCATC-AGTCCGGAACGGCCT-CCCAT-CGATCTGCTCGG-CGGCC--TTCCACTCAACGACCGCGACC-GA-GGTCAA-GCC-GGGCTACC---------------------- Cuphea_spectabilis -----------------------------------GCAGA-CGAC-A-GAGA--CTAGTTAACAAGCATTT---ATCGGGG----ACTC--------------------------------------------CCTCGATTGTC-GCTGT-CGTGATTGT---GGC-T-GT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAGCGTT--GA--TAATCGACCT--CTCGTCGC----ACCCGGCGT---GGG----TTACGACGC----TCGGCT-CGGTCA---TC-TT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTAGCGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGC-ATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACCTCGGCCC--------AAAAA---TACCCACTTGT--GG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGTGCAAT-A-CTGCGGTTGGCCTAAAGAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATAATTCCCCCC-C-GGGGAACC-AGTCCCGGGCGGCCT-CC-AATGGGCCTCCTCGC-CGGCCC-TT--AATCAACAAACGGG-CCCCAAGAAAA--GCGGGGCCTAACAACCGCATTAAGBCCGACAATA Cuphea_sessilifolia ---------------------------------TAGCAGAACG-CCA-GAGA--CTAGTTAACAAGGATTTT--G-CGGGGG---AATT-----CCCTC--GGCA--AAAAAGCCGTC--GAC--GATGGCGA---TGCTCGTC-GTTGC-GTTCGTTC----GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAGG-TACAAAT-AGA-GGA--CGACCGGCC-T--CC--CGAC-GTCCCCCTTT----GGG-------AGAAGACGG-ACGGCT-CGGTCGA---CCTT--GAAT------ATATTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGC-AAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGGACGCCATTCGGCTGAGGCGACGTCTGCCTGGGTGTCGACGCAACACATCGCCCC--------AAAAA----TCCCGCCAG--CGGGC-AAA-TAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCAGCAT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGCCATC-AGTCCGGAGCGGCCT-CCCAT-CATTATGCTCGA-CGGCC--TTCAACTAAAC-AACGCGACCCCA-G-TCA------------------------------------ Cuphea_sessiliflora ---------------------CGAATCCTGCAAAAGCAGA-CGACCA-GAGAA-CTCGTAAACAAGTAAATT--GTCGGTGG-----TCCG---CCCCC-G-ACA---AAATGCCATC--GATT-GA-GGCGG---CGCCCGTC-GTCGT-CTCGATCGTTT-GGC--CGT-ACC---AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-GGA-GGA--GCACCAGCC-T-CCC---GCC-GTCTCCCTAC----GGG----CGATGACGG----ATGGCT-CGGTAA---TCCT--CAAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGCCG-AAGATGGTCTCC-CGTGGCGCA-TC-GCTGCGGCTGGCCTAAAAAA--GAGCACGGGAGCGGCGT-TTTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGAACTGCTCGAGCGGCC--TTCCATTCAACGAACGCGACCCGA-GGTCA--GGCGGGGCTACC---------------------- Cuphea_schumannii -----GCGGAA-GGACATTGTCGAATCCTGCACAAGCAGAACGACCA-GAGAA--TAGTTAACAAGTATTT---GTCGGGGG---ACTC-----CCCTC-G-GCA--AAAAAGCCATT--GAT--GACGGCAA---CGCTTGCC-GCTGC-CTTAATCAT---GG---CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAG-CGA-GGA--CCACCGGCC-T-CCCGTCG----TACCGTCT-----GGG----C-AC-ACAA----TAGGCT-CGGGAT---TC-TT-CTAAT------A-TTTAAACCAAAA--GATTTTCGGCAACGGATAT-TTGG-TTTTCGCATGGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATGGA-TCTTTGAACGCAAGTTGCGCCG--ACGCCATTCGGC-GAGGG-ACGT-TGCCTGGGTGT--ACGCATCAC-TCGCCCC--------AAAAA---CACCCATTTG--CGG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCATG-GTTTTGCTCGA-CGGCC--TTCTACTTAACAAACGCGACCCCA-GGTCA--GGCGGG-TTACCCGCTGAATTTA----------- Cuphea_salvadorensis ---------------------CGAAGCCTGGACAAGCAGAACGACCA-GAGAG-TTAGTTAACAAGTATTT---GTCGGGGG---ACTC-----CCCTC-G-ACA--AAAATGCCATC--GAT--GACGGCAA---CGACTGCC-GCTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAG-CGA-GGA--CCACCGGCCTT-CCCGTCGTATGTACCCGTTT----GGG----CTACGA-------TTGGTT-CGGGCA---TC-TT-CGAAT------ATTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTCGT--GG--T---GTAC-------GGGAGC-GAAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTTCCCCC-TCGGGGAACC-AGTCCGGAGCGGCCT-CCCATGGGATTTGCTCGA-GGGCC--TTCCACTTAACAAACGGCACCCC------------------------------------------- Cuphea_repens ----------------ATTGTCGAAACCTGCAAAAGTAGAGCGACTA-GAGAACC-AGTTAACAAGTATTTCTCGTCGGGG----AGCA---ATCCCTCGGGGC-AAATAAAGCCATC--GATC-AATGACGG-C--GCTCGTC-GGCGG-CATGATCAT---GGC--CGT-ACCT--AAAAACCCCCGGG-CGC---GGAATGCGCCAAGGAA------CAACGTACAAAG-AGAGGG---CCACCGTCCAT---AG-AGCT-ATA-CCCTTT----GGGG------CTTGGC-ACTATGGCT-CGGGAAG--TCCT--CAAAT------GTTTTTAACAAAAA-CGACTCTCGGCAACGCATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------CAAAAA----CCCATTAA-CC--AAT-GGG-AC------GGGGCGC-GGAAGCTGGCCTCC-CGTCGCGAACTT-GCTGCGGCTGGCCTAAATAT--GAGCATGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAA--CTT-CCCCC-CTCGG-CATC-AGTCCG-ATCG-C----------------------------------------------------------------------------------------------- Cuphea_racemosa --------------------------------------GAACGACCA-GAGAA-CTAGTAAACAAGTATTT---GTCGGGGG---ATTCA-CCCCCCT--GGGCA--AAAAAGCCATT--TAT--GACGGCG----CGCCCGTC-GCTGC-CTTTATCGT---GGC--CGT-ACTA--AAAAA-T-CCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACA-GAGAGGGT--GCATCGGCCTT-CAC---GAC-ATCCC-GTCC----GGG----AGATGACGG----AAGACT-CGGGCATA-TCCT--CGAAAT-----GTTTTTAACCAAAA-CGGCTTTTGGCAACGGATATTTCGGG-TCTCGGATCGTTGAGGACCGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGCGT-CACGCATCACATCGCCCC--------AAAA-----TCCCACAAGT--GGG-----ATCT-------GGGAGC-GGAAGCTGGCCTCC-CGTGGCACAT-C-GCTGCGGCTGGCCTAAAGAT--GAGCATGGGAGCGGCGCAATTCCGCGACGCGCGGT-GGCGG-TAATTTTTC-CCCC-CTCGGGCATA-AGTCCGGAGCGGCCT-CCCCT-CGATCTGCTCGA-CG-CC--TTCCATCAATCGAACGCGACCCCA------------------------------------------ Cuphea_pulchra ----------------ATTGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTT---GGCGGGGG---AATTC-ATTCCCTC-G-GCA--AAAAAGCCGTC--GAT--GATGGCGA---CGCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACTA--AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CCAT-TACAAAT-AGA-GGA--CGACCGGCG-TCCCC---GAC-ATCCCCCTTTC---GGGGG-ACGACGGCGG----ACGGCTCGGTTGAA---CCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCAACACATCGCCCC--------AAAAAA---TCCCGCCAG--CGGGGTAAA-TAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CATTATGCTCGA-CGGCC--TTCCACTAAACCAACGCGACCCCA-GGTCA--G--------------------------------- Cuphea_pseudovaccinium ----------ACATTGCCGAAACCTGCAAAA----GCAGAACGACCA-GAGAA-CTAGTTAACAACTAT--CT-GTTGGAGG---AACC-----CCTTT-G-ACAG----AAGCCAAC--VGT--GACGGCGGG--TGCCCGTG-GCTCC-CGTCACCGT---GG--TCGT-ACC---AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACGAATGTA--GGA--GCGCMAGCC-T-CCT---GTC-GTCCCCCTTTC---GGG----CGACGACGG----ATGTCT-CGGTCA---TCCT--CTAAT-------ATTCAAACCATAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGMACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAA----TATCCT-CCAA-CCG--AT---ATGC-------GGGAGC-GGAAGATGGTCTCC-CGTTGCGCACT--GCCGCGGCTGGCCTAAAAC-ATGAGCAAGGGAGCGGCGTA-TTCCGCGACGAACGGT-GGTGG-TAACTCTTYCCCCC-CBCGGGCATC-AGTCCGGAGCGSSSS-SCCAT-CGATAAGCTCGA-GD-CC--TSCC-TTCAACG-A---------------------------------------------------- Cuphea_pseudosilene ------------------------------------------GACCA-GAGAA-CTAGTTAACAAGGATTTTTT--CGGGGGG--AAAT----CCCCTC-G-ATAAAAAAAGGCCATC--GAT--GACGACGA---TGCTTGTT-GTTGC-CGTCATTGT---GGC--CG-AACTT--AAAACAA-CCGGG--GC---GGAAGGGCCCAAGGAA------CAAG-GGCATAT-AGAGGGA--CTACCAGCC-T-CTC---GTC-GGCCCTTTCT----GGG----AGACGACGTG----CGGCT-CGGGCC---TCCT--CCAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG--TCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCCGCTAG--CGGG-TT--CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGTGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAAATCTTC-CCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATGCAACGAACGCGACCCCA------------------------------------------ Cuphea_procumbens ----------------------------------TGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGGC--ACTC-----CACTC-G-ACA---AAAAGCCATC--GGT--GACGGCAA---CGCTTGAC-GCTGT-CGTTATCAT---GGT--CGT-ACT---AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TATAAAGT-GT-GGA--CTACCGGCC-T-CTT---CTC-GTACCCGTCT----GGG----CTATGATGA----TTGG-T-CGGGAA---TCCC--CGAAAT------ATTAAAACCAAAA-TGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTTCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACCTCGCCCC--------AAAAA---TACCCATTTG--CGG--T---GTAC-------GGGAGC-AGAACATGGTCTCC-CGTGGCGAAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGACGTA-TTCCGCGACGCACGGT-GGTGG-TGATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-TCCAT-TTATATGCTCGA-CGGCC--TTCTACCTAACAAATGCGACCCCA-GGTC------------------------------------- Cuphea_pascuorum ---------------GATTGGCGAAACCTGSAAAAGGAGAACGACCA-GAGA--CGAGTTAACAAGTATTT---GTCGGG------ACA------CC--GG--CA--AAAAAGCCACT--GGT--GACGG-G--CGTGCTTGTC-GCGTC-CGCCATCGT---GGC--CGT-AC----AAAAAGCCCCGG--CGC---GGAAGGCGCCAAGGCA------CATG-TACACAAAGA-GGG---ACACCAGCCTT-CA---TGCC-AT-CCCGTTT----GGG-------TGATGACGG-AAGGCC-CGGGCGTA-TTCT--CGATT------GTTTTTAACCAATA-TGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCAACATGTCGGCCC--------AAAA-----TCCCGCAATT--GGG-----ATTC-------GGGTGC-GGAAGTTGGCCTCC-CGTGGCTATA-C-GCTGCGGCTGGCCTAAATAT--GAGCACGGGAGCSGCGCA-TTCC--GACGG-CGGT-GGTGG-TAATTCT---CCTC--TCGGGGATC-AATCCCGAGCGGCCT-CCCCT-CGATTT-CTCGA-CGGCC--TTCAATCAAACAMATBSSVCCCCAAGGTCAACGCCGGGGCTACCCCTTABGTTAAGATTTCYA-TA Cuphea_parsonsia -GAACTGCGGAAGGACATTGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTTT--GTCGGGGGG-AAATC-----CCCTC-G-ATAAAAAAAAGCCATC--GAT--GACGACAA---TGCTTGTC-GTTGC-CGTCATTGT---GGC--CGT-ACT---AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGAGGGA--CTACTAGCC-T-CTC---GTC-GTCCCTTTCT----GGG----AGACGACGTG----TGGCT-CGGGCC---TCCT--CCAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCCGCTA---CGGG-TA--CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGG-TAAATCTTC-CCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATTCAACGAACGCGACCCCA-GGTCA--GGCGGG-CTACCCGCTGATTTAAGCATATCA-TA Cuphea_nitidula ----------AAGGACATTGTCGAATCCTGCACAAGCAGAACGACCA-GAGAA--TAGTTAACAAGCATTTT--GTCGGGGG---ACTC-----CACTC-G-ATA--AAAAAGCCATC--GAT--GATGACAG---CGACTTTC-GCTGC-CGTGATCGT---GGC-T-GT-ACTT--AAAA-CCCCCGG--CGC---GGAAGGCGCCAAGGAAA------AAG-GACAAAGCGTT--GA--TAACCGGCC-T-GTCATCGC--A--CCCATCT----GGG----TTACGATGAC----CGGCT-CGGGCA---TC-TT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTTGT--GG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCTAA--GCCGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-GTATTTGCTCGA-TGGCC--TTCCACTTAACAAACGCGACCCCA-GGTCA--GGCGGGT-TACCCGCTGAATTA------------ Cuphea_mimuloides --------------------------CCTGCAAAAGCAGAACGACCA-GAGAACC-AGTTAACAAGTATTTTT-GTCGCGGG---ATTC-GCTCCCCC-GG--C-G-AAAAGGCCATC--GAT--GGCGG-G--CGCGATCCTC-GCGTC-CGCGATCGT---GGC--CGC-ACGA--AAAAACTCCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAT-AGAGGGA---CACCGGCCTT-CGC---GGC-ATCCCCGTTT----GGGG----AATGACGG----AAGGCT-CGGGCGCA-TCCT--CGGAT------GTCTTTAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGGCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCAACAAT--CAGG-----ATCC-------GGGTGC-GGAAGTTGGCCTCCCACCGGCGCTTT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAACTCTTCCCCT--CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTCGAACGAACGAACGCGACCCCA-GGTCA--GGCGGGGCTACCC--------------------- Cuphea_micropetala -----------------------------------GCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---ACTT-----CCCTC-G-ACA--AAAAAGCCATC--GAT--GACGGCAA---CGCTTGCC-GCTGC-CGTGATCGT---GGC--CGT-ACTA--AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAT-TGA-GGA--CCACCGGCC-T-CTC---GTC-GTACCCGTCT----GGG----CTACGTCGAC----TGGCT-CGGGAC---CCCT--CGAAT------ATTTTAAACCTAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTTCGCCCG-ACGCCACTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATCGCCC---------AAAAAA--TACCCATTTGA--GG--TA--ATAC-------GGGAGC-GAAAAATGGTCTCC-CGTGGCGCTAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA--TCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACT-AGTCCGGAGCGGCCT-CCCAT-TATCA-GCTCGA-TG-CC--TTCCACTCAACAAACGCGACCCCA-GGT-AA----------------------------------- Cuphea_melvilla ----------------ATTGTCGAAACCTGCAAAAGCAGAACGACCA-GAGAACC-AGTTAACAA----------------------------------------AAAAATAGCCATC--GGT--GATGGGCGG--CGCTCGTS-GCCCC-CATGATCGT---GGC--CGT-ACCT--AAAAA-CCCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACAAAG-AGA-GGG--CTACCGGCCTT--TTG-------------------------------------------GCT-CGAGAA---CCCTT--GAAT------GTTAATAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCATCGA---GG-AT----CCC-------CGGGGC-GGAAGATGGCCTCC-CGTAGCG-AACCAGCTGCGGATGGCCTAAATAT--GAGCATGGGAGCGACGCA-TTCCGCGACGCACGGT-GGTGG-TAATTTGTT-CCCC-CTCGGGCATC-AGTCCGGATCGGCCT-CCCGTTGAA-CTGCTCGA-CGGCC-TTTCAATCCAACGAACGCGACCCCA-GGTCA--GG-GG----------------------------- Cuphea_melanium ----GAGCGGAAGGACATTGTCGAATCCTGCAAAAGCAGAACGACCA-GAGAACC-AGTAATCAATGATT----GTCATGGG---AATTTTT--CCCTT-G-GCA---AAAAGCCATC--AGT--GACGGTGGG--CGCTTGTC-GCTCC-TGTCATAGT---GGC--CGT-ACTA--AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGA-GGA--GCACCAGCC-A-CTCGTTGT----CTCCCTTC----GGG----TGACGACGG----ATGGCT-AGGGCA---TCCT--CGAAT-------TATAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACYYGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTG-ACGCCATCCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GAAAGATGGTCTCC-CGTGGCGC-ATC-GTCGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-TGTCCGGAGCGGCCT-CCCAT-GGAACTGCTCGA-TGGCC--TTCCATTCAACAAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTGATTTAAGCAT-TCA-TA Cuphea_lutescens -----------------------------------GCAGAACGACCA-GAGAACCTCGTAAACAAGTAAATT--GTCGGTGG-----TCCG--CCCCT--G-ACA---AAATGCCAGT-CGATT-GA-GGCGG---CGCC-GTC-GTCGT-CCCGATCGTTT-GGC-TCGT-ACC---AAAAAA-CCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-GGA-GGA--GCACCAGCC-T-CCCGTCG-----TCTCCTAC----GGG----CGATGACGG----ATGGCT-CGGTGA---TCCT--CGAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCGCC--------CAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGCTGACCTAAAAAA--GAGCACGGGAGCGGCGT-TTTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAC-CGAACTGCTCGA-CGGCC--TTCCATTCAACGAACGCGACCC-A-GG-CA------------------------------------ Cuphea_llavea GGAACTGCGGAAGGAAATTGTCGAATCCTGCACATGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---ACTC-----CCCTC-G-ACA---AAAAGCCATC--GGT--GACGGCAA---CGCTTGAC-GCTGT-CGTTATCGT---GGT--CGT-ACT---AAAAA-ACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TATAAAGT-GA-GGA--CTACCGGCC-T-CTT---GTC-GTACCCGTCT----GGG----CTATGATGA----TTGG-T-CGGGAA---TCCC--CGGAT------ATTTAAAACCAAAA-TGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAA----TACCCATTTG--CGG--T---GTAC-------GGGAGC-AGAACATGGTCTCC-CGTGGCGAAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGACGTA-TTCCGCGACGCACGGT-GGTGG-TGATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-TTATCTGCTCGA-CGGCC--TTCTACCTAACAAATGCGACCCCA-GGTCA--GGCGGGGCTACCCCCTGAAT-------------- Cuphea_ingrata ------------------------------CGATCTCAGACAGACCA-GCGA-CC--GTAAACAAGCAA--CT-GTCGGTGGG---CTT----CCCCC--G-ACAGG---AAGCCATC--GGT--CGCGGCGG-C--GCCTGTC-GCGGT-CGTGATCGTTT-GGC--CGT-ACC---AAAAA-CCCCGG--CGC---GGAATTCGCCAAGGAA------CAAG-TACAGATTGA--GGA--GCACCAGCCTT--C---CGCC-GTCCCCCGTT----GGGG------CGAGGGCCG-ATGGCT-CGGTCAT--CCCT--CGAAT------ACAT-AAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGACCGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTTCCTGGGTGT-CACGCATCACTTCGCCCC--------AAAAAAAAGTCCAACTA---CGGGAT---CTTC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCG-AATC-G-TGCGGCTGGCCTAAAAAT--GAGCATGGGAGCTGCGTAA-TCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCT-ACTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGAACTGCTCGA-CG-CC--TTCCATT-AACGAACGCGACCC-A-G---------------------------------------- Cuphea_ignea ----------------------------------------------A-GAGAA-CTAGTTAACAAGCAATTT--GTCGGGGG---ACTC-----TCCTC-G-ATACC-AAAAGCCATT--GAT--GACGGCAA---CGTTTATC-GCTGC-CGTGATCGT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAG-CGTT-GA--TAACCGGCC-T--CTCGTGA---TACCCATCT----GGG----TTATGATGA----TTGGCT-CGGTCA---TC-TT-CGAAT------AAATTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCTTTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAA---TACCCACTTGT--GG--T---GTAT-------GGGAGC-GGAACATGGTCTCC-CGTGGCGGAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TACCGCGACGCACGGT-GGTGG-TAAT-ATT------------------------------------------------------------------------------------------------------------------------------ Cuphea_heterophylla ------------------------------A----GCAGAACGACCA-GAGAA-CTAGTTAATAATAAGTATTCATCAGG-----ACTCA-CTCCCGTA-GAACAAAAGAACGTCATT--GATG-GAGCG-AA-CG-GTTAGTCCGTTGC-CATGA-CGTTC-GCT-AGTTAACTAA-AAAACGACCCCG--CGCGCAGTAAG-CCCAGCCCAAGACAAACAAGTAACAAAGCGGAGTG----TACTCGCC---CCTA-CCTT-TTTCGTGCGTC---G------TCCCT-CGGCGG-ACGGACT--G-CATA--------G-ATC-----G-TTTAAATTGAAA-CGACTCTCGGCAACGGATATCTCGG-BTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAAAA----CCSACTTGT--GG--T---GTAT-------GGGTGC-GGAAAATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAATT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-TCCAC-GGATTTGCTCGA-CGGCC--TTCCAATCAACCAACGCGACCCCA------------------------------------------ Cuphea_glutinosa --------------------------------------GAACGACCA-GAGAA-CTAGTAAACAAGTAAA-CT-GTCGGTGGG---CTT----CCACC--G-GCA---AAAAGCCATC--GGTT-GCCGGCGG---TGCATGCC-GCTGT-CGTGACCGTTT-GGC--CGT-ACC---AAAAA--CCCGG--CGC---GGAAGGCGCCAGGGAA------CAAG-TACAAATAGGG-GGA--GCACAAGCC-T-CCC--CGTC-GTCTCCATTC------------GCCGTCGACGG-ATGGCT-CGGTGA---CCCT--CGAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGACCGTTGCGAAATGCCATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACATCGCCCT--------CAAAAAAA-TCCTACCA---CGGGC----ATAC-------GGGAGC-G-AAGATGGTCTCC-CGTGGCTT-ATC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCCGCGTGA-TCCGCGACGCACGGT-GGTGG-TAATTATTTCCCTC-CTCGGGCATC-AGTCCGGAGCGACCT-CCCAT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA------------------------------------------ Cuphea_gaumeri -----------------------------------GCAGAACGAACA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGG----AGTCA-CT-CCCTCCG-GCA-AAAAAAGCCATT--GAT--GATGG-A--TGCGCTCGTC-GCATC-CGTCATCGT---GG--------CCGA-AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACAG-AGA-GGG--GCTCCGTCCTT-CAC---GT---TATCCCTTCT---GGG----TGATGACGG----AAGGCT-CGGTCGTG-TCCT--CGAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AAAA-----TCCCACCCA--CTGGG----ATCA-------GGGAGC-GGAAGTTGGCCTCC-CGTGGCGCATT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGCAATTCCGCGACGCGCGGTTGGTGG-TAATTCTTT-CCCC-TTCGGGCACC-TGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTCCATCAAACGAACGCGACCCCA------------------------------------------ Cuphea_fuchsiifolia ---------------------CGAAT-CTGCAAAAGCAGAACGACCA-GAGAA-CTCGTAAACAAGTAAATT--GCCGGTGG-----TCCG--CCCCC--G-ACA---AAATGCCATC--GATT-GA-GGCGG---CGCCCGTC-GTCGT-CTCGATCGTTT-GGC--CGT-ACC---AAAAAACCCCG---CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-GGA-GGA--GCACCAGCC-T-CCCGCCGTC-----TCCTAC----GGG----CGATGACGG----ATGGCT-CGGTAA---TCCT--CAAAT------ATTTAAAACCAAAA-CGRCTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAAA--TCCAACTA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGCTGGCCTAAAAAA--GAGCACGGGAGCGGCGT-TTTCCGCGACGCACGGT-GGTGG-TAATTCTTTCCCTC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGAACTGCTCGA-CGGGC--TTCCATTCAACGAACGCGACCCC------------------------------------------- Cuphea_flavisetula ------------------------------CAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---AGTGA-CTCCCCCC-G-GCAG--AAAAGCCAAA-CGGT--AACGGGAG---CGCTCGTC-GCGCT-CTTGACTGT---GGC--CGT-ACC---AAAAAAA-CCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACA-CTTAGAGGG---GCACCAGCCTT-CACGCC----ATGCCCGTTC----GGG----CGATGACGG----ATGGGCCCGGTCGTCGTCCT--CGAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGCACGCAAGTTGCGCGCG-ACGCCATCCGGCAGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AACAAAAA--CCAACC-GT--GGG-----ATTC-------GGGAGC-GGATGTTGGCCTCC-AGTGGCGC-ATC-GCTGCGGCTGGCCTAAAAGT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCACGGT-GGTGG-TAATTCTT--CCCC-AACGGGCACC-AGTCCGGAGCGCCCT-CC-AAC----ATGCTCGA-CGTCC--TTCCATCAAACGAACGCGACCCAA------------------------------------------ Cuphea_flava -------------------------------------AGAACGACCA-GAGAA-CTAGTTA-CAAGGATTT---GGCGGGCG---AATT-----CCCTC-G-GCA--AAAAAGCCGTC--GAT--GACGGCGA---CGCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAT--AGAGGA--CGACCGGCC-T-TCCCGACG---TCCCCCTTTC---GGGAGAACGACGGCGG----ACGGCT-CGGTTGA--ACCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCAACACATCGCCCC--------AAAGAA---TCCCGCCAG--CGGGGTAAA-TAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAAT--GAGGACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CATTATGCTCGA-CGGCC--TTCCACTAAACCAACGCGACCC-A-GGTCAT-GC-GGGGCTACCG--------------------- Cuphea_ericoides -----------------------------------GCAGA-CGAC-A-GAGA--CTAGTTAACAAGGATTT---GGCGGGGG---AATT-----CCCTC-G-GCA--AAAAAGCCGTC--GAT--GATGGCGA-C--GCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAA-TAGAGGA---CGACCAGCCTT--CC--CGAC-GTCCCCCTTTC---GGG----AGACGACGGCGG-ACGGCT-CGGTTGAA--CCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATTGAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTTAACGCAAGTTTCGCCCG-ACGGCATTCGGCTTAGGGGACCTTTTCCTGGGTTT-TACGGAACACATTGGCCC--------AAAAAA--TCCCGCCAA---CGGGGTTAAATAC-------GGGAGCCGGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGCCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCATS-AGTCCGGAGCGGCCT-CCCATCCATTATGCTCGA-CGGCC--TTCCATTAAACC-AGGCGACCCCA-GGTCA--GGGGGGGCT-CCC--------------------- Cuphea_epilobiifolia -------------------------------------AGAACGACCA-GAGGACC-AGTTAACAA-----------------------------------AAACA---TA-GGC-GTC--GGTC--ATGGGCGG-GCGCTCGTC-GCCCC-CATGACCGCTC--GC--CGT-ACCT--AAAAA-CCCCGG--CGC---GGAAGGCGC-AAGGAA------CATG-TACAAAG-AGA-GGG--CTACCGGGCCT-CTGG-------------------------------------------GCT-CGGGAA---CCCT--CGAAT------GTTAATAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCACCGA---GG------ACAC-------GGGAGC-GGAAGATGGCCTCC-CGTAGCG-AAT-AGCCGCGGATGGCCTAAATAC--GAGCATGGGAGCGACGCA-TTCCGCGACGCACGGT-GGTGG-TAA--CTTTCCCCC-CTCGGGCATC-ACTCCCCATCGGCC--CCCC-GTTAGCTGCTCCA-CGGCC-TTTCAAACCAACGA-CCGGACCCCA-GGTCA--GGCGGGGCTACCCGGCGGTTTCAGCATTTCAATA Cuphea_disperma -----------------------------------GCAGAACGACCAAGAGAACC-GGTAAACAACGATTT---GTCGCGGG---AATT------CACC-G-TCA--AAAAAGCC--C--GAT--GACGGCGGG--HACCC-TC-CC-GT-C---ATCG----GGC--CGT-ACT---AAAATTTCCCCC--CGC---GGAAGGCGCCAAGGCA------CAAG-TACAAAA-CGA-GGA--CGACCAGCC-T-CC-GGACT---TCTCACTTC----GTG----CGACGACGG----ACGGCT-CGGTCAT--CC-TT--AGAC------AACTAATACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTCTACGCTATTCGGCCGAGGGAACGTCTGCCTGGTTGT--ACGCATTACCTCGCCCC--------GAAAAA-AAGTCCAAACAT--GG-A----GTAC-------GGGAGC-GAAAAATGGTCTCC-CGTGACGC-ATC-G-TGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTTAATCCGCGACGCACGGT-GGTGG-TAAHTCTTTCCCT-ACTCGGGCATC-TGTCCGGAGCGGCCT-CCCATGCGAACTGCTCGA-CGGCC--TTGCATTCTACGAACGTGACCC-------------------------------------------- Cuphea_denticulata ---------AA-GGACATTGTCGAAACCTGCAAAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTAT--CT-GTCGGGGG----ATCA-CTCCCCTC-G-GCAG--AAAAGCCATC--GAT--GACGG-G--CGCGCTCGTC-GC-GT-CTTGATTGT---GG--TCGT-ACC---AAAAAAA-CCGG--CGC---GGAAGGTGCCAAGGAA------CATG-TACACTC-AGA-GGC--GCACCGGCCTT-CAC---GGC-ATGCC-GTTC----GGG----CAATAACGG----AAGGCT-CGGTCG---TCCT--CAAAT------GTTTTTAACCAAAA-CGACT-TCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACTTCGCCCC--------AACAAAAATT-CCACTCGT--GGG-----ATTC-------GGGAGC-GGATGTTGGCCTCC-CGTGGCGCAT-C-G-TGCGGCTGGCCTAAAAGT--GAGTACGGGAGCGGCGTA-TTCCGCGACGCGCGGT-GGTGG-TAATTATTTCCCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAC-----ATGCTCGA-CGGCC--TTCCATCAAACGAACGCGACCCCA-GGTCA--GGCGGGCT-ACCCGCTGA-TTTAAGCA-TCA--- Cuphea_decandra -------------------------------------AGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGGGGG---AGTCA-CTCCCCCC-G-GCAG--AAAAGCCATC--GGT--GACGG-G--CGCGCTCGTC-GCGTC-TGTCACTGT---G-C--CGT-ACC---AAAAAAA-CCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACTT-AGA-GGG--GCACCGGCC-TTCACGCC----ATGCCCGTTC----GGG----CGATGACGG----AAGGGCCCGGTCGTG-TCCT--CGAAT------GTTTTTAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACGTCGCCCC--------AACAAAA--TCCCACTCGT--GGG-----ATTC-------GGGAGC-GGATGTTGGCCTCC-CGTGGCGC-ATC-GCTGCGGCTGGCCTAAAAGT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAATTCTT--CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAC-----ATGCTCGA-CGGCC--TTCCATCAAACGAACGCGACCCCA-GGTCAA-GCCGGG-CTACCCC-------------------- Cuphea_cyanea -------------------------------ACAAGCAGAACGACCCAGAGA--CTAGTTAACAAGCATGTT--GATCAGGG---TCTC-----TCCTC-GTATAGC-AACAGTCATT--GAT--GACGGCAR-CG-CTTTGTC-GCTGC-CGTGAATTTGATGCTCTGATCACT---AAACACACCCGGGACGC-CGGGAAG-CGCCAAGGAAA-----CAAGATACAAAGGCGTTGAAT-AAATCGACCCT--CT--CGTCGACACCCCGTCT---GGG------ATTACGA-GTGATGGGCTCGGTCA---T-CTT-CGAAT------AATTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGGCCC--------AAAAA---TACCCACTTGT--GG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GTCGCGGTTGGCCTAAAATT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTC-CCCC-CTCGGGCACC-AGTCCG-AACGACCT-CCCAA-TAATTTGCTCGA-CGGCC--TTCCATTCAACAAATGCGACCCCA-GGTCAA-G-CGGGGTTACCC--------------------- Cuphea_circaeoides ----------------TGCAAACCTGCC----AAAGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTT---GTCGAGGGGG-TAAC---TCCCCC--G-ACA--TAAAAGCCATT---ATT--ACGGGCA---CGCTCGTC-GCGTC-CGTGATTGT---GGC--CGT-ACG---AAAAAAACCCGG--CGC---GGAAGGCGCCAAGGAA------CATG-TACACAG-AGAGGG---GCACCGGCCCTTCAC---GGC-ATCCCCATTC----GGG----TGATGACGG----AAGGCT--GGCGCC--T-----CGAATGT-----TTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAA-----TCCCACAAGT-CGGGG----ATGCT------GGGA-C-GGAAGTTGGCCTCC-CGTGGCACAT-C-GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGCA-TTCCGCGACGCGCGGT-GGTGG-TAATTCTTCCCCCC--TCGGACAGC-AGTCCGGAGCGGCCT-CCCCT-CGATTTGCTCGA-CGGCC--TTCCAACAAACAAACGCGACCCCA------------------------------------------ Cuphea_carthagenensis TGCGGAA-GGACATTGTCGAATCCTGCAAAA----GCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTTT--GTCGGGGGG-AAATC-----CCCTC-G-ATAAAAAAAAGCCATC--GAT--GACGACAA---TGCTTGTC-GTTGC-CGTCATTGT---GGC--CGT-ACT---AAAA-CACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACATAT-AGAGGGA--CTACCAGCC-T-CTC---GTC-GTCCCTTTCT----GGG----AGACGACGTG----TGGCT-CGGGCC---TCCT--CGAAT------ATTTTAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATCTGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCATGTCGCCCC--------AAAA-----TCCCGCTAG--CGG--TA--CTAT-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAATATGAGCACGGGAGCGGCGTATTTCCGCGACGCACGGT-GGTGGTAAATCTTCC-CCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCAT-CGATCTGCTCGA-CGGCC--TTTCATTCAACGAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTGAGTTAAGCATATCAATA Cuphea_calophylla ---------------------------------AAGCAGAACGGTCAC-AGAACC-AGTAACCAATGAGATG--ATGAGAMKWK-AMCM--NYGGCCCC-ARGSA--AAADMGCCATATCAGTG-CACGGTGGG--CGCTTGAC-GCCCCTCGCCAAAGT---GGC--CGT-ACTAA-AAAAAACCCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGA-GGA--GCACCAGCC-A-CTCGTTG----TCCTCCTTC----GGG----TGACGACGG----ATGGCT-CGGGCA---TCCT--CGAAT-------TATAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATAACATTGCCCC--------AAGAAA---TCCAACTAA--CGG-AT---CTB--------BBBBBB-BBBVGATGGTCTCC-CGTGGCGC-ATC-GCCGSGGTTGGCCTAAATAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TCATTCTTTCCCTC-CTCGGCTATC-TGBYCGGAACGGCCT-CCCAT-GGAACTGCTCGA-T-GCC--TTCAGTTCA--CAACACGACCCC------------------------------------------- Cuphea_brachypoda --------------------------------------GAACGACCA-GAGAA-CTCAGTAACAAGTAAA-CT-GTCGGTGGG---CTT----CCACC--G-GCA---AAAAGCCATC--GGTT-GCCGGCGG---TGCATGCC-GCTGT-CGTGACCGTTT-GGC--CGT-ACC---AAAAA--CCCGG--CGC---GGAAGGCGCCAGGGAA------CAAG-TACAAATAGGG-GGA--GCACAAGCC-T-CCC--CGTC-GTCTCCATTC------------GCCGTCGACGG-ATGGCT-CGGTGA---CCCT--CGAAT------ATTTAAAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGACCGTTGCGAAATGCCATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGGATCACATCGCCCT--------CAAAAAAAATCCTACCA---CGGGC----ATAC------GGGGAGC-GGAAGATGGTCTCC-CGTGGCTTA-TC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCCGCGTGA-TCCGCGACGCACGGT-GGTGG-TAATTATTTCCCTC-CTCGGGCATC-AGTCCGGAGCGACCT-CCCAT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA------------------------------------------ Cuphea_bahiensis ---------------------------------AAGCAGAACGACCA-GAGAA-CTAGTTAACAAGGATTT---GGCGGGGG---AATT-----CCCTC-G-GCA--AAAAAGCCGTC--GA-C-GATGGCGA---CGCTCGTC-GTTGC-CTTCGTCAC---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAT-AGA-GGA--CGACCGGCCTC-CCCGACGB----CCCCCTTTC---GGG----GGACGACGACGG-ACGGCT-CGGCTGA--ACCT--CGAATA-----TTTTTAAATCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGGCATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGGAACACATCCGACG--------CAAAAAA-TCCCGACCAGA-CGGGGTAAAATAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGCAAT--GCTGCGGCTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATTCTTCCCCCC-CTCGGGCATC-AGTCCGGAGCGGCCT-CCCATCA-TTATGCTCGA-CGGCC--TTCCACTAAACCAACGCGACCCCA------------------------------------------ Cuphea_axilliflora TGCGGAA-GGACATTGTCGAATCCTGCACAA----GCAGAACGACCA-GAGAA--TAGTTAACAAGTATTTT--GTCGGGGG---ACTT-----CCCTC-G-ATA--AAAAAGCCATC--GGTT--ACGGCAG---CGATTGCC-GCTGT-TGTGATCGT---GG--TTGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TATAAAG-TGA-GGA--CCACCGGCC-T----CTCGTCGTACTCGTCT-----GGGC-TACGATGATTGG-------CT-CGGGCA---TCCT--CGA-AT-----ATTTTAAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCTGAAGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAA---TTACCCATTTG--CGG--T---ATAA-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGAC-CACGGT-GGTGG-TAATATTTTCCCCC--TCGGGCACC-AGTCCGGAACGGCCT-CCCATG-ATCT-GCTCGA-CGGCC--TTCCACTCAACAAACGCGACCCCA-GGTCA--GGCGGGGCTACCCGCTG-ATTTAAG--------- Cuphea_appendiculata ---------------------CGAATC-TG-AC-AGCAGAACGACCA-GAGAA-CTAGTTAACAAGTATTTT--CTCGGGGG---ACTT-----CCCTC-G-ATA--AAAAAGCCATC--GGTT--ACGGCAG---CGATTGCC-GCTGT-TGTGATCGT---GG--TTGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TATAAAG-TGA-GGA--CCACCGGCC-T-CTCGTCG----TACTCGTCT----GGG----CTACGATGA----TTGGCT-CGGGCA---TCCT--CGAAT------ATTTTAAACAAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCC-ACGC-ATTCGGCTGAGGGCACGTCTGCCTGGGTGT-CACGGATCACCTCGGCCC--------AAAA---TTACCCATTTG--CGG--T---ATAA-------GGGAGC-GGAACATGGTCTCC-CGTGGCGCAAT--GCTGCGGTTGGCCTAAAAAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGG-CACC-AGTCC-GAGCG-CCT-CC-ATG-ATCTT-CTCGA-CGGGC--TTCCACTCAACAAACGCGACCC-A-GGTCAA--GCGGGG--------------------------- Cuphea_angustifolia --------------------------------------GAACGACCA-GAGAA-CTAGTTAACAAGTATTTT--GTCGGGG-----ATTC-----AATC-CCACA--AAAAAGCCATC--GAT--GACGGCAA-C--GCCTGCC-GCTGC-CGTAATCAT---GGC--CGT-ACT---AAAAACACCCGG--CGC---GGAAGGCGCCAAGGAA------CAAT-TACAAAGCGA--GGA--CCCCCGGCC-T--CT--TGCC-GTACCCGTCT----GGG-------CTACGACG-ATTGGCT-CGGGAT---TCCT--CAAAT------ATTT-AAACCAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGCCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACCTCGCCCC--------AAAA-----GCACCCAATTGCGG--T---GTAC-------GGGAGC-GGAACATGGTCTCC-CGTGGCGGAAT--GCTGCGGTTGGCCTAAATAT--GAGCACGGGAGCGGCGTA-TTCCGCGACGCACGGT-GGTGG-TAATATTTT-CCCC-CTCGGGCACC-AGTCCGGAGCGGCCT-CCCAT-GGATTTGCT-GA-CGGCC--TTCTACTTAACAAACGCGACCCCA------------------------------------------ Cuphea_acinifolia ------------------------------------CAGAACGACCA-GAGAA-CTCGTAAACAAGAAAATT--GTCGTTGGG---CTT-----CCACC-G-ACA---AAAAGCCATC--GGTT-G-CGGCGG---TGCATGTC-GCTGT-CGTGATCGTTT-GG--TCGT-ACC---AAAAA--CCCGG--CGC---GGAAGGCGCCAAGGAA------CAAG-TACAAAT-AGACGGA--GCACAAGCC-T-CCCCGTCG---TCTCCATTC----GG-----CGACGACGG----ATGGCT-CGGTGA---TCCT--CGAAT------ATTTAAAACGAAAA-CGACTCTCGGCAACGGATATCTCGG-CTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCG-ACGCCATTCGGTCGAGGGCACGTCTGCCTGGGTGT-CACGCATCACATCGCCCC--------AAAAAA-A-TCCTACCA---CGG-AT---CTAC-------GGGAGC-GGAAGATGGTCTCC-CGTGGCGC-ATC-GCTGCGGTTGGCCTAAAAAA--GAGCACGGGAGCGGCGTAA-TCCGCGACGCACGGT-GGTGG-TAATTATTTCCCTC-CTCGGGCATC-AGTCCGGAGCGACCT-CC-AT-CGAGCTGCTCGA-CGGCC--TTCCATTCCACGAACGCGACCCCA-GGTCA------------------------------------ ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 803 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;