#NEXUS [written Wed Jun 04 02:09:49 EDT 2014 by Mesquite version 2.75 (build 564) at VampireS-PC/192.168.0.14] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=52; TAXLABELS Homo_sapiens Bos_taurus Mus_musculus Gallus_gallus Xenopus_laevis Xenopus_tropicalis salmon_salar Danio_rerio Oreochromis_niloticus Takifugu_rubripes Halocynthia_roretzi Ciona_intestinalis Tribolium_castaneum Danaus_plexippus Bombus_terrestris Megachile_rotundata Apis_florea Drosophila_melanogaster Drosophila_sechellia Drosophila_erecta Schizosaccharomyces_pombe Trichosporon_asahii Caenorhabditis_elegans Caenorhabditis_remanei Caenorhabditis_brenneri Caenorhabditis_briggsae Tetrahymena_thermophila Ichthyophthirius_multifiliis Paramecium_tetraurelia Plasmodium_yoelii Neospora_caninum Toxoplasma_gondii Saccharomyces_cerevisiae Schizosaccharomyces_japonicus Tetrapisispora_phaffii Candida_albicans Coccidioides_immitis Neurospora_crassa Cryptococcus_gattii Arabidopsis_thaliana Capsella_rubella Theobroma_cacao Cicer_arietinum Albugo_laibachii Orcinus_orca Thalassiosira_pseudonana Maylandia_zebra Taeniopygia_guttata choanoflagellida_Salpingoecidae Dictyostelium_fasciculatum Trypanosoma_cruzi___ Trypanosoma_brucei ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=136; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Homo_sapiens AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENR Bos_taurus AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYLQAVEEFQACLNLQEQYAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKR Mus_musculus AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQYAETHYQLGLAYGYNSQYDEAVAQFGKSIDVIEKR Gallus_gallus SKKLLGLGQKHLVMGNIPAAVNAFQEAASLLGKKAEAFFYYGKSLLELARLELPWDMLELAKVIYKRQAQAHLKLGEVSIESENYVQAIEEFQACLALQQKYAESHYQLALAYHYNSQFDEAVLQFGKSVEVIDKR Xenopus_laevis AKRLMGAGQKHLVMKDVRSAVNLFQEASSLLAKQAEAFYSYGMSLLELARLQLAWEMLDLCKIIFKRQAQAHQKLGEVCIESENYSQAVEDFLACLNIQKEHAETHYHLGLAYQYSSKHEEAISHFTQSIGVIEKR Xenopus_tropicalis AKKLMATGQKHLVMKDVRSAVTSFQEASSLLAKKADAFYSYGMSLLELARLQLAWEMLDLCKLIFKRQAQAHLKLGEVSVESENYSQAVEDFLACLNIQKEHAETNYHLGLAYQYSSKHEDAISHFTQSVGVIEKR salmon_salar ANKLIGTGKRHLVMGDVVSAVNYLQEACGMLAKRGEAFFLCGKALLELARLQLAWEMLEVAKVIYKRKAQAHLNLGEVAAESGNYSQAVDDFQQCLSLQLKHAETHYQLGLTLCSDCQYSQAIEHFNHSARVIKSR Danio_rerio AKKLIGTGSRHLVMGDVVSAVSVFQEACAMLAEKGEAFFFCGKALLELARLRLAWEMLEVAKVIYKRKAQIHLKLAEVGVESGNYSQALEDSNECLTLQLKHTETHYQLGTTYSYTTQYNQAIEHFSNSIKVIESR Oreochromis_niloticus ANKLIGTGKKHLVMGKVVEAVSTLQEACGMLAKKGEAFFWYGKALLDLARLQLAWEMLEVAKVIYKRKAQAHLKLGEVSAESGNYPQALEDFQECLKLQVKHAETHYQLGVTYSLNTQYSEAIESLKSSISIIKNR Takifugu_rubripes AKKLVGAGNKYLVLGDVVSAVAVFQDACSMLAAKGEALFLCGKSLLELARLQLAWEMLEVAKVIYKRKAQIYLKLGEVSAESGNYPQALEDFQECLCLQLKHAETHYHVATTLCYMDKYSQAIQHYNSSIEVIEKR Halocynthia_roretzi IQECMGAGKKDLLCNDYSEAVNCFQEACTLLSGKCEAYYYYGVSLLELARMQLAWEMLELAKVLYKKHAQCHLKLGELGLEVENHPQAIGDFLECLVIQKDLAETYYNLGLAYSFEKRYDNALEHYQSALDVLEAR Ciona_intestinalis YAINLANGKKNLLCGDFPEAVACFQATSALQSERAESFYFYGKALLELARMQLAWEMLELAKVLYQKKAQCHSKLGELGLEVENYSQSIGDFLESLVIHKELAETHYNLGLAYTFDKRYDNALEHYTASLNVLDAR Tribolium_castaneum PKELFGQGVRAYVLQDFDTAVKAFSKASELLAAEGDVYLYYGKSLLELSRLQVAWEVLELAKRIFTNRAETLIVLGEISLESGNFTSAIEDMTQGLEIQKTLAETCYKLGGAYSTNGQIDEAIASFNSSYEYLQNK Danaus_plexippus PEELLAAGRRHLAVRDYTSAAETLATACELLAKTAEAYLWYGKSLLGLSRLQLAWEMLDLSRNILQKRAEVHLALGEVALESETYDKAVADMISCLDIQKELAETHYQIGLANSLASNFEDAITHFKNAANILETR Bombus_terrestris AATAISHGKRHLLVRDYTMAVTALAQACQLLAEKGEPYLLYGRALLGLARLQVAWEVLELAKLVLLKRSDAYRLLGEVAMEGGNFQGALNDLHRCLELLQQIAEIHYQLALAHSLGNEFDASIEEFNKATELLDSR Megachile_rotundata PATAISHGKRHLLVRDYTMAVTALAQACQMLVEKGEPYLLYGRALLGLARLQVAWEVLELAKLVLLKRADAYRLLGEVAMEGGNFQGALNDLHRCLELLQQIAEIHYQLALAHSLGNEFDASIEEFNKATELLEAR Apis_florea PATAISHGKRHLLVRDYTMAVTALAQACQLLAEKGEPYLLYGRALLGLARLQVAWEVLELAKLVLLKRADAYRLLGEVAMEGGNFQGALNDLHRCLDLLQQIAEIHYQLALAHSLGNEFDASIEEFNKATELLETR Drosophila_melanogaster GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVGQPLLLYAKALIAMALLQLAWEILEAAAQIFSRQAEVQTELANIEFENGILEAAREDYEKALKIHGELAELHYKIGLTYLMQQLNKEGATALRQSSVLIEEE Drosophila_sechellia GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVGQPLLLYAKALIAMALLQLAWEILEAAAQIFSRQAEVQTELANIEFENGILEAAREDYEKALKIHGELAELHYKIGLTYLMQQLNKEGATALRQSSVLIEEE Drosophila_erecta GKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVGQPLLLYAKALIAMALLQLAWEILEAAAQIFSRQAEVQTELANIEFENGILEAAREDYEKALKIHGELAELHYKIGLTYLMQQLNKEGATALRHSSVLIEEE Schizosaccharomyces_pombe IEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESIRNVLWLYGKSLFQIAIDFNVAWEVLDLTRVMQSKADIYDLLGELSLEIENFSQASQDLKTALEWKEKVSEAHYKLALALEFTNPKSRACEHVEKAAEILKNV Trichosporon_asahii VAKLVSEGKKAIALRQWEEGVGKYADALDLQRELAPLLLSYGKALYELALDFNAAWEVLDVARTIYTRSECYLALGDVSCETENFDQAVKDYEAAVKLKASLASAEYQLGTALEFTSGRPAALVHVQAALDGFKAR Caenorhabditis_elegans LAELLAAGRRALKVNDIDKASDSLSEATELSSEIFDSLYYYGMATLELAKMKLSWEILETARCIAAAKADVLVLLGEHGISDGKYTQAFEDLDRALNIQRNVAQTYILIGNACASDANYDETVQYFGKTKDVLIAR Caenorhabditis_remanei LAELLANGRRELRVNNNAEASEILSEAAELSVEIFDACYYYGMASLEVAKMKLAWELLETARCTAAAKADVLILLGDHGIADENYEQAREDLGRALGIQQNIAQTYILMASACSSSMNFTDAVTFYKRTKDTLVAR Caenorhabditis_brenneri LSELLTAGRRAIRVNNIEEASEILSQATELSTEIFDAYYFYGMATLELAKMRLAWELLETCRCIAIVKADVLVLLGEHGVSDGKYDQAKEDLEKALEIQKNVSQTYILMANACSNAMNFEEAVALYQKTKESLLHR Caenorhabditis_briggsae AAELLAAGRRALKVSDYETATEALSEASEMIVELYEYYYYYGMATLELGKMKLAWEVLENARCIAMAKADVLVVLGDHSVSDGKYDQALEDLEQALEIQKNVAQTYILMADACTSGMNYDEAINYFEKTKETLKSR Tetrahymena_thermophila LESRLTEAVECYKNKNFDQAENIFSDLMIYAVKFSKYFFFYGDMLLSKLELQLAWENLELSRKIYNQEVEVTLRIADLEQWRDNFSDALKEYTMALQLSKEISSIFFQLGNAVLYENKEYCEEEGLKNFIDSAQIL Ichthyophthirius_multifiliis LEQQIEKVKEHIRKNEFESAEEIFSDLMIDAVKYSKYYYYYGDMLLTKQDLQLAWENLELCKKIIYKNVQVTLRLGDLEAWRDSLKDSVEQYTEALNIAFQISSIYFQLGNSLLYENKEFCEENSLKNFIQSAQIL Paramecium_tetraurelia AKELFNEGKHNEAEVMMQGVMQQALAYYKDELAVAEYYYMYGTIIVLKLSFHIAWENLEVARVILEKEAKVYIKLAELDQWRDKFDDAQENLQKSLQLRLQCAETYFFLGNVTLYNYKEGKEEEALGFYLKALQIL Plasmodium_yoelii AQELFDMGNLEFKESKNYDVAAERFSMAVEKKVKREYYLCFADALLTKEEEQLAFEMFEFSRKCYEMLSYVFIRLGDISLLNHFFEEALKEYEKCVNLREEHSQSYMFCGKRKEAVEYFEKVKKILLDVRQKTTPL Neospora_caninum AETLLDEGKALFRSRNWAKAAEYFSRAVERKVTESTYYLWFGDALLTKEEEELAFEMLEMAKRCLLKKSFAYVRLADMQLMNERYDEAAQDYREAVSLRERYAQATFFSGKKKAALDVFKRTLSIGKQIKEGELGM Toxoplasma_gondii ADTLLGEGKTVFRSRNWAKAAEYFSRAVERKVAESTFYLWFGDALLTKEEEELAFEMLEMAKQCLLKKSFAFVRLADMQLMNERYDEAAQDYGEAVSLRERYAQATFFSGKKKAALDVFKRTLAIGKKIKDGFLGM Saccharomyces_cerevisiae MERQVQIAKDLLAQKKFLEAAKRCQQTLDSLPKDPELFTIFAQAVYNMEVYENALDLLAQALMLLGRPGDVYILMGDIEREAEMFSRAIHHYLKALGYYKTLIQAEFLVCDALRWVDQVKDKLKRFKHAKALLEKH Schizosaccharomyces_japonicus IDQLVVQGNKAFSQKHYEIAAEKYSDALEVLEQKRNVLWLYGRTLFEIALFGLAWEVLDLCRVLQTRAADVLDLLGEISLENESFEQAAQDLQEALLWKQQVSEAHYKLALALEFTALEKEALKHVEAAADIIQHV Tetrapisispora_phaffii IKTLVVEGAKYTANSDLANASKCYAELLDLESKTPDHVMLLASCLYQLGVFQNTLELLQVARIIYMENGDVDQEVEDFATAVEDYKQAIDYIKETDEFENENLTTSLKLIEALRWLTDTKDKHKEILNSTQILLKK Candida_albicans VAKLISEGSRAYSSKDFDLASEKYGEACEEYSKSAEILFLYGRALFKVGQLAVAFQVLDLAVLFEKKLSETYDILGEVSLEAENFNQAADDLRKCLELRLELSESHYKLALALEFQSDDKNAAEQMKLAIESVERR Coccidioides_immitis AELKRLASAKEAIKDYNSAADLYSRAVEIQAELNRNVLWLYGRTLFEIALFGLAWEVLDLCRVLQTRASDIYDLQAEISLEGERFSEAVSDLRAALKLKRELAECHYKLSLALEFSSVRAEAAKHMEAAIQCCKLR Neurospora_crassa LADLSAHAAAQYAQKNYDEAAELYAQAAEMQAEMAEILFLYGRALFKVGQLAVAFQVLDLAVLFEKKLGDLHDLLAEISLENERYPAAITDSRASLKYKQQLAEAHFKLSLALEFASVTDEAAAELEAAIASTKLK Cryptococcus_gattii VEKLVAEGKKAIALHEWEQGVDRYATALDRMRLLAPLLLAYGKALYDLASYNAAWEVLDVARTIYQKISDCYLALGNVSCETENFSQAVQDFTAAVDIQNTIASAHYQLATALEFTPSRTSALTHVESALSSLVRR Arabidopsis_thaliana AEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHINAYYRYGLALLAKAQLDMAWKMLDIARVITDKQVDILCSLAEVSLEREDIESSLSDYKNALSILERLAELNFRICICLETGCQPKEAIPYCQKALLICKAR Capsella_rubella ADELTEKGSVFLKEQDFGEAVDCFSRALEIRVEHVNAYYRYGSALLEKAQLDMAWKMLDIARAITDKQVDILCALAEISLEREDIESSLSDYKKALSILERLAELNFRICICLETGCQPKEAMPYCQKAMLICKAR Theobroma_cacao ADELAEKGSKAFKENDFAEAADCFSRALEIRVAHLKAYYLYGRALLYKAQLDLAWKMLDVARAIADKQVDILSALAEVALEREDIESSLSDYQKALSILQQLAELNFRICMCLEIGSKPQEAIPYCQKAISVCRSR Cicer_arietinum ADELMDKENKAMKDNDYGEAADNYSRALEIRVGHVHTYYKYGCALLYKAQLDLAWKMLDIARAIVEKQVDILSTLGDVALEREDFETSLSDYQKALSILEQLADLNFRICLCLEVGSRPEEAVAYCEKATSVCKAR Albugo_laibachii QDPRFQRGLCLLKEHDYEAAVTIFEDLLKTKVELAPIYYEYGNALLSLVELELAWEMLEVARVIYTRHARVYMRLGDLSMESENFTRAKQDYENSLVLNKKIADLYCCLAISCIYQDPSQPQINLDQGCTDEAPVE Orcinus_orca AKKLLGLGQKHLVMGDIPAAVNAFQEAASLLGKKGEAFFFYGKSLLELARLELAWDMLDLAKIIFKRQAQAHLKLGEVSVESENYIQAVEEFQACLNLQEQYAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKR Thalassiosira_pseudonana SLPSHALAKQYLNTGQFNQALEVLEESLGEMHERAPLYYLYGTTLLYLVELQIAWENLETARSIMSKMAKVHSRLGDLQKANGNSTGSISDYIISLSIRAKCADAHFSLAQAYVEAPNSQARMEDEAAGIEKSCDH Maylandia_zebra AKKLIGTGKRHLVMGDVVSAVNVFQEACSMLAEKGEAFFLCGKSLLELARLQLAWEMLEVAKVIYKRKAQAYLKLGEVSAESGNYPQALDDFQECLALQLKYAETHYHVATTLCYMDQYSQAIQHYNSSIKVIETR Taeniopygia_guttata SKKLLGLGQKHLVMGNIPAAVNAFQEAASLLGKKAEAFFYYGKSLLELARLELAWDMLELAKVIYKRQAQAHLKLGEVSIESENYTQAIEEFQACLALQQKYAESHYQLALAYHYNSDFDEAVLQFGKSMEVIDKR choanoflagellida_Salpingoecidae AEVFAAAKSLYHKDEVDQAGAILSDLLETMVEQFARVYQLYGLCLIASARVQVGWECLECARVIYSRLADVHFELGSVYLETDQYREAEEELEQCVALRRKWAQALFQLGIAHRQLKQSQKAIAAFSEAVDILDAL Dictyostelium_fasciculatum MGKVKAAKALLDDQDYLSACELLGSSLSALSPIYAPIYIKYGRALLFSYKLEVAWDVLELARVIYEKNSDVHMLLGDLNVELENHQDALEEYNIALQLRKKQAEVYYYIGMVYQIKNDAKFAEDSYKKAIEILTGA Trypanosoma_cruzi___ ANEARAVGIAHYNNHRYEDALDIQYRVVRHFEKKGVYFLDYGLSQLRVLQLEACFINLDVARVCFQKQAEVHNSIAQLQVEREDFDSALKEYESELMTYRFIAAVLYGIADCYMKEGDFEGAEERFQAALDELASF Trypanosoma_brucei AVAMRAVGLELFNKHNYEEALDVQYRIVRYFENKGIYFLDYGLSQLRMIQLEACFTNLDVARVCFQKQAEVHNAIAQVQVEREAYEEALKEYESELFIYRYLAAVLYEIADCYMKEGDFEGAEERFIKAIEEIEKF ; END; begin mrbayes; set autoclose = yes nowarn = yes; outgroup Trypanosoma_brucei; lset rates = gamma Ngammacat = 4; prset aamodelpr = fixed ( rtREV + F ); mcmcp ngen = 1000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 136; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 136; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 136; END; BEGIN TREES; Title 'Trees from "temnamefinalstage3.1danio.nex.con.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Homo_sapiens, 2 Bos_taurus, 3 Mus_musculus, 4 Gallus_gallus, 5 Xenopus_laevis, 6 Xenopus_tropicalis, 7 salmon_salar, 8 Danio_rerio, 9 Oreochromis_niloticus, 10 Takifugu_rubripes, 11 Halocynthia_roretzi, 12 Ciona_intestinalis, 13 Tribolium_castaneum, 14 Danaus_plexippus, 15 Bombus_terrestris, 16 Megachile_rotundata, 17 Apis_florea, 18 Drosophila_melanogaster, 19 Drosophila_sechellia, 20 Drosophila_erecta, 21 Schizosaccharomyces_pombe, 22 Trichosporon_asahii, 23 Caenorhabditis_elegans, 24 Caenorhabditis_remanei, 25 Caenorhabditis_brenneri, 26 Caenorhabditis_briggsae, 27 Tetrahymena_thermophila, 28 Ichthyophthirius_multifiliis, 29 Paramecium_tetraurelia, 30 Plasmodium_yoelii, 31 Neospora_caninum, 32 Toxoplasma_gondii, 33 Saccharomyces_cerevisiae, 34 Schizosaccharomyces_japonicus, 35 Tetrapisispora_phaffii, 36 Candida_albicans, 37 Coccidioides_immitis, 38 Neurospora_crassa, 39 Cryptococcus_gattii, 40 Arabidopsis_thaliana, 41 Capsella_rubella, 42 Theobroma_cacao, 43 Cicer_arietinum, 44 Albugo_laibachii, 45 Orcinus_orca, 46 Thalassiosira_pseudonana, 47 Maylandia_zebra, 48 Taeniopygia_guttata, 49 choanoflagellida_Salpingoecidae, 50 Dictyostelium_fasciculatum, 51 Trypanosoma_cruzi___, 52 Trypanosoma_brucei; TREE con_50_majrule = ((51:0.1665445592234616,52:0.08814563621562485):0.48510804139614294,((49:0.6522961548740813,50:0.6097492572443476):0.3159185132667026,((44:0.387901621053916,46:0.7945508109885409):0.2769280737627367,((29:0.7373041799045686,(27:0.1694235948585754,28:0.2689747277571397):0.3236084417423718):0.2720449026633494,(30:0.6137491837464163,(31:0.02009145961189211,32:0.06840036956387648):0.3900357705339729):0.5960138709974103):0.1289080969440818):0.2003603509425059,(((43:0.1266532202084106,(42:0.04553430666937051,(40:0.03856311587407731,41:0.0434315583954015):0.1574543664633805):0.07528115563306596):0.5557664039136903,(((22:0.3825932102476613,39:0.1247082487338427):0.3045413575336506,(33:0.7661672628917506,35:0.8104540327095645):0.4708437653101705):0.1092381198017939,((36:0.2609338123928168,38:0.3855571010626089):0.2181238428560035,(37:0.5286794932729995,(21:0.4520081917526163,34:0.1150200335696581):0.08859368080312387):0.162678754347316):0.1760617578803242):0.205598055592483):0.09354700763942127,((26:0.07839412988853396,(23:0.1551024556773978,(24:0.1864599145308828,25:0.1352391611133363):0.05985865084427276):0.1224185300489805):0.5014118884849221,(14:0.2766764245442401,(13:0.3755591474141803,(15:0.02246711123344751,16:0.01998132207349974,17:0.01049280266862013):0.4317770763445888,(18:0.003828370396424802,19:0.003780349379197412,20:0.007911714674118669):0.7514455019696924):0.1101660940420448,((11:0.1086829312739408,12:0.213945258958453):0.2340086413715203,((9:0.1350663615410138,(8:0.09361866866536325,(7:0.1172191986874317,(10:0.09938423445037262,47:0.01080582360041087):0.0792709435194973):0.03118954523078102):0.03307360614305065):0.1191629574986793,((5:0.03768040562449886,6:0.04624825224554874):0.1239789613833131,(1:0.01810140809959602,2:0.008116867418257134,45:0.004006161916265358,(3:0.01085568303238872,(4:0.01132136522289994,48:0.01897016585029131):0.1207509256771158):0.01452571157474789):0.1173100156746577):0.08118304158322845):0.0897942010339787):0.1148741576772608):0.09423449684982046):0.1005193967402742):0.1712550614561321):0.48510804139614294)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1401862190293; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8575384951590739268; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2411621793298941988; mqVersion 275; checksumv 0 3 382352930 null getNumChars 136 numChars 136 getNumTaxa 52 numTaxa 52 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.12372440898771E14 sumSquares 1.12372440898771E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 586; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2411621793298941988 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;