#NEXUS [written Fri Jun 20 14:42:52 EST 2014 by Mesquite version 2.75 (build 564) at int231.microbio.usyd.edu.au/172.16.130.231] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=42; TAXLABELS 'Aspergillus BN038-G SBG' Aspergillus_Iran_clinical_65728 Aspergillus_Iran_clinical_66041 Aspergillus_Iran_clinical_66161 Aspergillus_nomius_EF203120 Aspergillus_bombycis_EF203121 Aspergillus_tamarii_EF203123 Aspergillus_flavofurcatus_EF203124 Aspergillus_pseudotamarii_EF203126 Aspergillus_caelatus_EF203129 Aspergillus_parvisclerotigenus_EF203130 Aspergillus_flavus_EF203131 Aspergillus_thomii_EF203133 Aspergillus_flavus_EF203134 Aspergillus_fasciculatus_EF203135 Aspergillus_kambarensis_EF203136 Aspergillus_flavus_EF203142 Aspergillus_flavus_EF203143 Aspergillus_subolivaceus_EF203144 Aspergillus_flavus__EF203147 Aspergillus_minisclerotigenes_EF203148 Aspergillus_minisclerotigenes_EF203149 Aspergillus_minisclerotigenes_EF203151 Aspergillus_minisclerotigenes_EF203153 Aspergillus_minisclerotigenes_EF203154 Aspergillus_parasiticus_EF203156 Aspergillus_arachidicola_EF203161 Aspergillus_sojae_EF203167 Aspergillus_leporis_EF203171 Aspergillus_minisclerotigenes_EU072095 Aspergillus_minisclerotigenes_EU072097 Aspergillus_minisclerotigenes_EU072098 Aspergillus_minisclerotigenes_EU072100 Aspergillus_minisclerotigenes_FRR_4086 Aspergillus_minisclerotigenes_FRR_5309 Aspergillus_oryzae_IMI_126842 Aspergillus_flavus_JCM_2061 'Aspergillus Group II-like LA2-5 SB' Aspergillus_flavus_Group_II_M40_No1 Aspergillus_flavus_Group_II_MEA_352 Aspergillus_flavus_Group_II_MEA_511 Aspergillus_PTCC_5006 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "beta tubulin data PAUP results.nex"'; DIMENSIONS NCHAR=444; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Aspergillus BN038-G SBG' CGAGT----TATATGCT-TTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCCGCCACGTG-TTTGCTAACAACTCTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATATGG-CATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_Iran_clinical_65728 CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_Iran_clinical_66041 CGAGTTG---ATATGC-TTTGGACCAAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAT-TTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_Iran_clinical_66161 CGAGTTG---ATATGC-TTTGGACCAAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAATGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_nomius_EF203120 CGAGTCA----TATGC-TTTGGACCTAGGGCCTCAGC-AGAAACATGAGCTCGGATATATCATCTCGTGTCTGACACGTG-TTTGCTAATACCTTTGCAGGCAGACCATCTCCGGCGAGCACGGCCTCGACGGCTCCGGTGTGTAAGTACGACCCGCGTACACCTCGAATGAACGACGATCAGAT-GGCATTGGAAGAGTTTTGGATGGGTCTGACGGGAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTGCGTACCTCGAATTTTTC---------AGCCGCTATAAAAACGCTTTGCAAGTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCTGGCCCCTTCGGTCAG Aspergillus_bombycis_EF203121 CGAGTCA---ATATGC-TTTGGACCCAGGACCTCAGC-AGAAACATGAGCTTGGATGTATCATATCGTGTCTGACACGTG-TTTGCTAATATCTTTGCAGGCAGACCATCTCCGGCGAGCACGGCCTCGACGGCTCCGGTGTGTAAGTACAACCCGTGTACAACTCGAACGAATGACGACCAGATGGGCATTGGAAGAG-TTTGAATGGGTCTGACGGGAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCCTCTATGAAAACGCTTTGCAAGTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_tamarii_EF203123 CGAGTTA---ATATGC-TTTGGACCAAGG-ACTGCAC-AGAAGCATGAACTCAGATGTGCCCTACTGTGTCTGCCACGTG-TTTGCTAACATCTTTGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAATCCGTGTACACCTCGAACGAACGACAACCAGAT-GGCATTGGAAGAG-TTGGAATGGGTCTGACGGGAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCACATTTTTC---------AGCCTCTTTGACAACGCTTTGCAAGTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTTGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavofurcatus_EF203124 CGAGTTA---ATATGC-TTTGGACCAAGGAACTGCAC-AGAAGCATGAACTCAGATGTGCCCTACTGTGTCTGCCACGTG-TTTGCTAACATCTTTGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAATCCGTGTACACCTCGAACGAACGACAACCAGTT-GGCATTGGAAGAG-TTGGAATGGGTCTGACGGGAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCACATTTTTC---------AGCCTCTTTGACAACGCTTTGCAAGTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTTGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_pseudotamarii_EF203126 CGAGTTAATTATATGC-TTTGGACCAAGGAACTTCAC-AGAAGCATGAACTCGGATGTGCCCTATT-----------GCG-TTTGCTAACATCCTTGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGTCCGTGTACACCTCGAACGAACGACGAGCAGAT-GGCATTGGAAGAG-TTGGAATGGGTCTGACGGGAAGGATAGTTACAATGGCTCCTCTGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAATTTTTC---------AGCCTCTATGAAAACGCTTTGCAAGTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_caelatus_EF203129 CGAGTTA---ATATGC-TTTGGACCAAGG-ACTCCAC-AGAAGCATGAACTCGGATGTGCCCTATTGTGTCTGCCACGTG-TTTGCTAACATCTTTGCAGGCAGACCATCTCTGGCGAGCATGGCCTTGACGGCTCCGGTGTGTAAGTACAATCCGTGTACACCTCGAACAAACGACGACCAGAT-GGCATTGGAAGAG-TTGGAATGGGTCTGACGGGAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCCTCTATAAAAACGCTTTGCAAGTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_parvisclerotigenus_EF203130 CGAGTTA---ATATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCCGCCACGTG-TTTGCTAACAACTCTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_EF203131 CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_thomii_EF203133 CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTA---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_EF203134 CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_fasciculatus_EF203135 CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_kambarensis_EF203136 CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_EF203142 CGAGTTA---GTATGCTTTTGGTCCAAGGAACTCTCCTCAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_EF203143 CGAG-TA---GTATGC-TTTGGACCAAGGAACTCCTC--AAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_subolivaceus_EF203144 CGAG-TA---GTATGC-TTTGGACCAAGGAACTCCTC--AAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus__EF203147 CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EF203148 CGAGTTG---ATATGC-TTTGGACCGAAG-ACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EF203149 CGAGTTG---ATATGC-TTTGGACCGAAG-ACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EF203151 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EF203153 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EF203154 CGAGTTG---ATATGC-TTTGGACCAAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_parasiticus_EF203156 CGAGT-----ATATGC-TTTGGACCA--GGACTCCTC--AAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCTGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTGGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_arachidicola_EF203161 CGAGTTA---ATATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGTCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAGGGATAGTTACAATGGCTCCTCTGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_sojae_EF203167 CGAGTTA---ATATGC-TTTGGACCAAGGAACTCCTC-CAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCTGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAACGCTTTACAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_leporis_EF203171 CGGCATA---ATATGT-CTTGGACAAAAGGACTTGGC-GGAAGCATAGTCT--GATGTGTCCTGTTACATTGGTCATGTGTTTTGCTAACAGCTTCGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGATGGCTCCGGTGTGTAAGTACAAACCGCGTATATATCGAATGGAGGACAATTAGAT-GGCAGTGGAAGAG-TTCGAA-AGGTCTGACGGAAAGGATAGCTACAATGGCTCCTCCGATCTTCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTTCGTACCTCAGAATTTTCCTGGATTCAAGCTTCCGCGAAAACAC-TTGCAGTTCCTGACCTCTTCTCCAGGCTAGCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTCGATCTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGCCCCTTCGGTCAG Aspergillus_minisclerotigenes_EU072095 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EU072097 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EU072098 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_EU072100 CGAGTTG---ATATGC-TTTGGACCAAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAACCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_FRR_4086 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_minisclerotigenes_FRR_5309 CGAGTTG---ATATGC-TTTGGACCAAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAT-TTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_oryzae_IMI_126842 CGAGTTC---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_JCM_2061 CGAGTTC---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGTCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG 'Aspergillus Group II-like LA2-5 SB' CGAGTTA---GTATGC-TTTGGACCAAGGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTGTTATATCTGCCACATG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-GGCATTAGAAG---TTGGAATGGATCTGACGGCAAAGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAA-TTTC---------AGCATCTATGAAAACGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTTCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_Group_II_M40_No1 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_Group_II_MEA_352 CGAGTTG---ATATGC-TTTGGACCAAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_flavus_Group_II_MEA_511 CGAGTTG---ATATGC-TTTGGACCGAAGAACTCCTC-AAAAGCATGATCTCGGATGTGTCCTATTATATCTGCCACGTG-TTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTATACACCTCGAACGAACGACGACCATAT-AGCATTAGAAG---TTGGAATGGATCTGACGGCAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCAAAATTTTC---------AGCATCTATGAAAAGGCTTTGCAACTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG Aspergillus_PTCC_5006 CGAGTTA----TATGC-TTTGGACCAAAGAACTGCAC-AGAAGCATGAACTCAGATGTGCCCTACTGTGTCTGCCACGTG-TTTGCTAACATCTTTGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAATCCGTGTACACCTCGAACGAACGACAACCAGAT-GGCATTGGAAGAG-TTGGAATGGGTCTGACGGGAAGGATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTACCTCACATTTTTC---------AGCCTCTTTGACAACGCTTTGCAAGTCCTGACCGCTTCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTTGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG ; END; BEGIN TREES; Title 'Trees from "beta tubulin data PAUP results.nex"'; LINK Taxa = Taxa; TRANSLATE 1 'Aspergillus BN038-G SBG', 2 Aspergillus_Iran_clinical_65728, 3 Aspergillus_Iran_clinical_66041, 4 Aspergillus_Iran_clinical_66161, 5 Aspergillus_nomius_EF203120, 6 Aspergillus_bombycis_EF203121, 7 Aspergillus_tamarii_EF203123, 8 Aspergillus_flavofurcatus_EF203124, 9 Aspergillus_pseudotamarii_EF203126, 10 Aspergillus_caelatus_EF203129, 11 Aspergillus_parvisclerotigenus_EF203130, 12 Aspergillus_flavus_EF203131, 13 Aspergillus_thomii_EF203133, 14 Aspergillus_flavus_EF203134, 15 Aspergillus_fasciculatus_EF203135, 16 Aspergillus_kambarensis_EF203136, 17 Aspergillus_flavus_EF203142, 18 Aspergillus_flavus_EF203143, 19 Aspergillus_subolivaceus_EF203144, 20 Aspergillus_flavus__EF203147, 21 Aspergillus_minisclerotigenes_EF203148, 22 Aspergillus_minisclerotigenes_EF203149, 23 Aspergillus_minisclerotigenes_EF203151, 24 Aspergillus_minisclerotigenes_EF203153, 25 Aspergillus_minisclerotigenes_EF203154, 26 Aspergillus_parasiticus_EF203156, 27 Aspergillus_arachidicola_EF203161, 28 Aspergillus_sojae_EF203167, 29 Aspergillus_leporis_EF203171, 30 Aspergillus_minisclerotigenes_EU072095, 31 Aspergillus_minisclerotigenes_EU072097, 32 Aspergillus_minisclerotigenes_EU072098, 33 Aspergillus_minisclerotigenes_EU072100, 34 Aspergillus_minisclerotigenes_FRR_4086, 35 Aspergillus_minisclerotigenes_FRR_5309, 36 Aspergillus_oryzae_IMI_126842, 37 Aspergillus_flavus_JCM_2061, 38 'Aspergillus Group II-like LA2-5 SB', 39 Aspergillus_flavus_Group_II_M40_No1, 40 Aspergillus_flavus_Group_II_MEA_352, 41 Aspergillus_flavus_Group_II_MEA_511, 42 Aspergillus_PTCC_5006; TREE Bootstrap_Consensus = (((((3:1.0,35:1.0):1.0,(32:1.0,34:1.0,22:1.0,39:1.0,30:1.0,41:1.0,21:1.0,23:1.0,24:1.0,31:1.0):1.0,40:1.0,4:1.0,33:1.0,25:1.0):1.0,(20:1.0,15:1.0,14:1.0,(37:1.0,36:1.0):1.0,12:1.0,19:1.0,38:1.0,17:1.0,13:1.0,2:1.0,18:1.0,16:1.0):1.0,(28:1.0,26:1.0,27:1.0):1.0,(1:1.0,11:1.0):1.0):1.0,((5:1.0,6:1.0):1.0,(10:1.0,((8:1.0,7:1.0,42:1.0):1.0,9:1.0):1.0):1.0):1.0):1.0,29:1.0); TREE Maximum_Likelihood_Result = (((((3:0.0,35:0.0):0.002378,(32:0.0,34:0.0,22:0.0,39:0.0,30:0.0,41:0.0,21:0.0,23:0.0,24:0.0,31:0.0):0.002362,40:0.0,4:0.002362,33:0.002362,25:0.0):0.009594,(20:0.0,15:0.0,14:0.0,(37:0.002365,36:0.0):0.002377,12:0.0,19:0.0,38:0.004748,17:0.009637,13:0.002373,2:0.0,18:0.0,16:0.0):0.00955,(28:0.004767,26:0.004907,27:0.004746):0.002365,(1:0.0,11:0.0):0.004715):0.03721,((5:0.043032,6:0.006004):0.04611,(10:0.00726,((8:0.002364,7:0.0,42:0.002368):0.019914,9:0.014825):0.002866):0.003355):0.01011):0.191555,29:0.0); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 444; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 444; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 444; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1403239372472; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 39975845417147619; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7691237117371081074; mqVersion 275; checksumv 0 3 1809109902 null getNumChars 444 numChars 444 getNumTaxa 42 numTaxa 42 short true bits 15 states 15 sumSquaresStatesOnly 375146.0 sumSquares 375146.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 794 866; setLocation 269 40; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7691237117371081074 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 269 40; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;