#NEXUS [written Tue Jun 17 15:33:07 BST 2014 by Mesquite version 2.75 (build 564) at UNIVERSI-76FA92/148.197.220.108] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=54; TAXLABELS Homo_sapiens_Dact1 Monodelphis_domesticus_Dact1 Gallus_gallus_Dact1 Anolis_carolinensis_Dact1 Chrysemys_picta_bellii_Dact1 Xenopus_tropicalis_dact1 Latimeria_chalumnae_Dact1 Lepisosteus_oculatus_dact1 Danio_rerio_dact1 Oreochromis_niloticus_dact1 Callorhinchus_milii_Dact1 Homo_sapiens_Dact3 Monodelphis_domesticus_Dact3 Anolis_carolinensis_Dact3 Chrysemys_picta_bellii_Dact3 Xenopus_tropicalis_dact3 Latimeria_chalumnae_Dact3 Lepisosteus_oculatus_Dact3 Danio_rerio_dact3a Takifugu_rubripes_dact3a Oreochromis_niloticus_dact3a Danio_rerio_dact3b Takifugu_rubripes_dact3b Oreochromis_niloticus_dact3b Callorhinchus_milii_Dact3 Petromyzon_marinus_dactA Lethenteron_japonicum_dactA Petromyzon_marinus_dactB Lethenteron_japonicum_dactB Lethenteron_japonicum_dactC Lethenteron_japonicum_dactD Petromyzon_marinus_dactD Homo_sapiens_Dact2 Monodelphis_domesticus_Dact2 Gallus_gallus_Dact2 Anolis_carolinensis_Dact2 Chrysemys_picta_bellii_Dact2 Latimeria_chalumnae_Dact2 Lepisosteus_oculatus_dact2 Danio_rerio_dact2 Takifugu_rubripes_dact2 Oreochromis_niloticus_dact2 Callorhinchus_milii_Dact2 Anolis_carolinensis_Dact4 Chrysemys_picta_bellii_Dact4 Latimeria_chalumnae_Dact4 Lepisosteus_oculatus_dact4 Danio_rerio_dact4 Takifugu_rubripes_dact4 Oreochromis_niloticus_dact4 Callorhinchus_milii_Dact4 Lepisosteus_oculatus_dact4r Danio_rerio_dact4r Branchiostoma_floridae_dact ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=320; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Homo_sapiens_Dact1 MTERQRTRERQEATLAGLAELEYLRQRQELLVRGALLRKQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFSECLEATLSSDGCPKSA-DLEVRSPKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFKMDGYILSLVQKKTRKPRTSVDPKRSVCVKAQFIPGHMGVKKHRKTRKKCRDDLKKGPEAGVPGREKPKHKRRWKSSAEISYEEARRRGRRESDSEYSAECTSEDEYTTFGDSESSVSEGEFVGESTTTSDSEESGGLIWSQFVHPKTFVKIKASHNLKKKILRFRSGSLKLMTTV Monodelphis_domesticus_Dact1 MTERQRTRERLEATLAGLAELEFLRQRQELLVRSVLLRQQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFCECLETSLSSDGHPKST-DLEVRSPKYQCDLVSKNGNDIYRYPSPLHAVAVQSPMFKIDGYILSLVQKKTRKLRTSVDPKRSVCVNAQFIPGNVRLKKHRKSRKKCHDDFKKSQEAGLSGREKPKHKRRWKSSAEISYEEARRRNRRESDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTTSDSEESGGLIWSQFVSHKTFVKIKASHNLKKKILRFRSGSLKLMTTV Gallus_gallus_Dact1 MAERQRTRERLEATLAGLGELEYLRQRQELLVKSLLLRRQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFSECLEATLNSDGRPKSA-DLEVRSPKYQCDLVSKNGSDVYRYPSPLHAVAVQSPMFRIDGYILSLVQRKTRKPRTSLDPKRSMCVNAQYIPATVKLKKHRKGKKKCRDELKKLQESGLQGREKPKHKRRWKSSAEISYEEARRRNRRDSDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTTSDSDESGGLIWSQFVNAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Anolis_carolinensis_Dact1 MAERARTRERLEATLAGLAELSFLRRRQELRVQRWMLRRQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLDASLNSDGRPKSA-DLGASSPKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFKMDSYILSLVQKRIRKPRTNLDPKRSMCVNGSYIPASVKLKKHRKGKKKCRDDPKKLLETGLLGREKPKHKRRWKLSAEVSYEEARRRNRRESDSEYSAECTSEDEYTTFGDSESSLSGVEFVGESTTTSDSDESGGLIWSQFVNAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Chrysemys_picta_bellii_Dact1 -AERQRTRERLEATLAGLGELDYLRQRQELLVKSLLLRKQLLRGLLQELDKQISDLRLDETDSRPSSGFYELSDGASGSLSNSSNSVFSECLETSLNSDGRPKSA-DLEVR-SKYQCDLVSKNGNDVYRYPSPLHAVAVQSPMFKIDGYILSLVQKKTRKPRTSLDPKRSMCVSAQFIPATVKLKKHRKTKKKCRDDLKKSQEPSLPGREKPKHKRRWKSSAEISYEEARRRNRRESDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTTSDSDESGGLIWSQFVNAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Xenopus_tropicalis_dact1 MSERQRTRERLEATLAGLAELGYLRHRQELLVKSALLKKQLLRGLLHELDKQINDLKIDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLETSLNTDGQAKSADDFDVRSPKYQCDLVSKNGNDIYRYPSPLHAVAVQSPMFKMDGYILSIIQKKARKPRTSVDPKRSICVNAHYIPAIVKVKKHRKSKKKCREDVKKPNEPAVVPKDKPKHKRRWKSSAEISYEEARRRRQRESDSEYSAECTSEDEYTTFGDSESSLSEVEFVGESTTSSDTDESGGLIWSQFVTAKAFVKIKASHNLKKKILRFRSGSLKLMTTV Latimeria_chalumnae_Dact1 MSDRQRIRERLEATLAGLGELEYLKRRQELLVRSVLLRKQLLRGLIQELDKQINDLRLDETDSRPSSGFYELSDGGSGSLSNSSNSVFSECLDSSLGTDGHPKSA-DLEVRSPKYQCDLISKNGTDIYRYPSPLHAVAVQSPMFKLHNYIFSLVQRRARKLRTSLDPKRSICVNAQYIPATVKVKKHRKARKKCRDDSKKSQDSHHPGREKPKYKCRWKSSAEISYEESRCRRRRESDSEYSAECTSEDEYTTFGDSESSFSEVDFVGESTTSSDTDESGGLVWPQFGAVKNFVKIKASHNLKKKILRFRSGSLKLMTTV Lepisosteus_oculatus_dact1 MLDRWRTRERLEATLAGLGELEYLRQRQELLVRSVLLRKQLLRGLIQELDRQISDLRLDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLDTSLGADGQPRPAGELEVRSPKYQCDLVARNGSDVYRYPSPLHAVAVQSPMFRLDHYILGLLQRRARKPRTSIDPKRSICVSAQYIPAGVKVKKTRKPRKKCRDDAKKSHDSSLAGREKPKYKRRYKTIAEVPYEEARKRRKRESDSEYSAECTSEDEYTTFGDSESSLSEVDFVGESTTSSDSDESGGLVWPQFGAQKAFVKIKASHNLKKKILRFRSGSLKLMTTV Danio_rerio_dact1 MGERVRARERLDATVAGLTELEYLRQRQELLVRSVLLRKQLLRGLIQELDRQISDLRLDETDSRPSSGFYDLSDGASGSLSNSSNSVFSECLDTSLCSEGRLKPADDPDVRSSKFHCDLIAKNGNDVYRYPSPLHAVAVQSPVFKLDSYIFGLLQRRARKPRTSIDPKRSLCVSAQYIPAGIKGKKSRKHRRRTRDESKKSIEGRILHHEKPKYKRRPRGLHEIPYEEARRRRKRESDSEYSAECTSEDEYTTFGDSESSASEADYVAESSTSSDSEGSAGVNWRQISAQKAFVKIKASHNLKKKILRFRSGSLKLMTTV Oreochromis_niloticus_dact1 M-DRLAVRERLEASVSGLGELELLRRRQEVLVRAALLRKQLLRGLIQELDRQISDLQLDEPDSRPSSGFYDLSDAASGSLSNSSNSIFSEC---------------ELGVCSPKYHCDLVAQNGNDVYRYPSPLHAVVVQSPAFRLDSYIYSLLQRRARKPRTSIDAKRSLCVTNRYVPAGFKVKKTNRRRRSC-ED--KISKHHHHGRDKPKYKRRLRAMMEVSYDEARRRRRKESDSEYSAECTSEDEYTAFGDSESS--EEEYVEESTNTSDTEESGGMGRGRGQAQKAFVKIKASHNLKKKILRFRSGSLKLMTTV Callorhinchus_milii_Dact1 MSDRCRTRDRLEAALAGLGELDFLKQRQEYLVRGAMLRKQLLRGLIQELDRQISDLRLDETDSRPSSGFYELSDGTSGSLSNSSNSVFSECLDASLSTDGRPKSA-DLEVRSPKYQCDLVSKNGSDVYRYPSPLHAVAVQSPIFRLDNYIFGLI------------------VNAQYIPGTVKGKKPKKDRKKCRDDNRKPPESSLLGREKPRYKRRWKSTVEVTHEEAKRRRRRESDSEYSAECTSEDEYTTFGDSESSLSEVDFVGETTSSSDSDESGGLVWPQLGVSKAFVKIKASHNLKKKSCAF----------- Homo_sapiens_Dact3 MSERGRLRGWLEGSLAGLCELHWLRERQEYRVQQALLEEQLLPGLVWDLGQQLGDLSLEEQESGRSSGFYE--DPSSTGP-DSPPSTFCD-SEPRGIASERPKSLGDAVVRSP--------RAG--PFLTPSPLHAVAMRSPRPPLDGYISALLRRRRGQPRTSPDGPRSVRVKAQYIPGGARRKRGRRPRRRGRE-ARRSQETSLLERERPRRGRRWRSTAEIDAADGRRPRP--SD---S-ECLGG--G--YGESESSASEGESPAFSSASSDSDGSGGLVWPQQLGPKVFVKIKASHALKKKILRFRSGSLKVMTTV Monodelphis_domesticus_Dact3 -----------------------------------------LPGLMWELGQHLGELSLDEEDVGLSSGFYE--GPSPTP--DSPPSTFGD-SEPRGAASERPKSLGEASVRSPGGVATS--------FLAPSPLHAVALQSPRLHLESYISGLLRRRRGQPRTSPPAPRSARVKAQYIPAVARKGRGRRPRRKGRD-GRRSQENSLLERERPRRPRRWRSTAEISGEEARRAVRGGSD---S-ECRAVGGYG-YGESESSASDAESLAFSSASSDSEGSGGLVWPQQLQGKVFVKIKASHALKKKILRFRSGSLKVMTTV Anolis_carolinensis_Dact3 -----------------------------------------LPGLMWELEQQLGLLRLNETDSWPSSGFFF--FFLIK-----IYYFKKETPESRLGASERPKSVGDVTVRSPPARYP------PDPFLYPSPLHAVALQSPLLKVESYISRLIRRRSRKPRTSLEPVRSLCVKAQYIPAHGKKKKGRRPRKKCREDARKSQENSLLERERQRRPRKWRSTAEICQEEL--ASRGQSD---S-ECQAEEG---YGDSESSVSDGDSPVYSSASSDTDESGGLVWPQQLQPKVFVKIKASHALKKKIMRFRSGSLKVMTTV Chrysemys_picta_bellii_Dact3 MSERGRLRGWLEGSLAGLCELHLLRERQERRVRQALPEEQLLPGLMWELEQQVGGLRLYETDSWPSSGF-G--DSS---------------AESRGSASERPKSVGEVAVRSPRLLPR----DSLDPFLYPSPLHAVAMQNPLLKVESYISRLIRRRSRKPRTSLEPARSVCVKAQYIPAHAKKKKGRRPRKKCREEARKSQENSLLDRERQRRPRKWRSTAEICQEEVRRRRRSGSD---S-ECRAEEG---YGDSESSLSEGGSPTFST-SSDTDESSGLVWPQQLRPKVFVKIKASHALKKKIMRFRSGSLKVMTTV Xenopus_tropicalis_dact3 MGDRGRLRHLLRSSLAGLCELKLLRDRQEIRVRRAL-----LDRQLWELERQLGELRLRENDNEN--V----------CEADG--MEASDVTEARLHANERPKSAGDISVRSP-------------------------------RAEGYILSLL-RR-RYLR---SA----RANASYTP-HPRRKKGHLP-RKCLEERKRSLETSLREGERAPPVRKWRSTAEISQEEESR------------------------DSEGEEEEEGE---------------LVWPLQLRPQMF-KVKASQALKKKIMRFHTGSLKVMTTV Latimeria_chalumnae_Dact3 MNERSRNKERLEASLAGLCELQFLRQRQEYLVQKALLKRQLLKGLISQLEQQVGELQLETLDSQPSSGFSELSDGPSPAVSDSSTSAFGECAEARINANERPKSVGDLHVRSPKYQCDLVSRDGMDTFSYPSPLHAVAMQSPMLKVENYIMGLIQKRNRKPRTSLEPKRSLCVNAQYIPANVRNKKNRKPKKKCREE-RKSQENSLLDRERQRRQRKWRSTVEICQDEAKRKKRPPSDSEYSADCCAEDDYTMFGDSESSLSEVESPGFSTCSSDTDESGGLVWPQQVQPKVFVKIKASHALKKKIMRFRTGSLKVMTTV Lepisosteus_oculatus_Dact3 MSERSRNKDRLEASLAGLCELELLKQRQEYLVLSALLRRQLLKALMASLEQQVGELRVDVGDSRPSSGFYELSEGPSPGLSDSSVFR--EFSDARVSASERPKSVGDLSVRSPAAEED--------RWPWDPPYLGEFEEDQLYRVENYILGLIQRRARKPRTNLEPKRSLCVSAQYIPASSSQRKSRKGTKKCREDTRKSQENSLFDRDRQRRQRKWRSTLEISQDEGRRRKRQPTDQERAPLC--EEGYPTLGDSESSLSEADSPGSSSLSSDSDESGGLVWPQQLQPKAFIKIKASHALKKKILRFRTGSLKVMTTV Danio_rerio_dact3a -EERGRNKERLEAGLTWLCELEILKQRQESLVLGALLRRQLLQLLMLALQQQLSEMRVDDLESPSSSGFYDQSESLSPLRSCSS------P------SCHRPRSM-DAMLRSPEEEEEDEDSS---QWVSDQMADGHESFTPDMRVETYILGLLQRR--T------------VYTERRATHNHCVVSRLLRRRG-EEATKSREDSCVGRDYPPSQRLWCSSADLSQEED--EFRNH--QE-------ME-ASTTNGSDSSLSETFSPGTSSVSSDSDESGGLVWPQQLNPNAVVKIKASHALKKKIMRFRSGSLKLMTTV Takifugu_rubripes_dact3a MTERSRTKQHLEASLVGLCELELRKQRQECLVLGALLRRKLLKGLMQALEQQVEELRMDTGEERPCCGFCELNEAKSPRRVHAA-----EP------PNNRPKSVGDPILRSPTM--D--------SWQWDQVW----QQEPV-RVEGFIVGLIQRYARQPRTTLDTGHTPCASSCFIPGSNPRSIQKKSKKKYHE-RKKSQENSLQERHHANNIRRWCSNLELSQDEGKRQKRSGLDQERAPLC--EEDYAAPAESESSMSEVYSPASSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKRKILRFRSGSLKVMTTV Oreochromis_niloticus_dact3a MTERSRTKERLEACLAGLCELELRRQRQECLVLGALLRRQLLQGLMQALEQQVGELRIDTGNSRPSSGFYESSEGQSPGKSCTT-----EP------TSDRPKSVGDPALRSPAM--D--------SWQWDLSGDNGTWEQQPEKVEGYILSLIQRHTRQPRTTFDPYGSLHVSAQYIPGPNQQPNQVKYRKKNHE-RKKSQENSLLERPQNQNQRRWRSNLELSQDEGRRRKRHGQDQESAPLC--GEEYGGPAESESSMSEVYSPASSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKKKILRFRSGSLKVMTTV Danio_rerio_dact3b MSERGRQKQRLELSLAGICELELLKRRHQALIISALP----TPSLMKLLQHQVGELKVDDGE-RAGAGFSEGPLDSSSG----------EI------LTERPKSAGDV-VRSPSED-E--------PWIWQPI-----------HVETYILGLIQRRSRKPRTSLEPARSLSVNAQYIPA--PTYKSSKPRKKCRED-KKAQENSLLERDKARRSRRWRSTQELSQDEARRRRRPV------PQP--LRDYT-PGESESSLSEAESPGSSSLSSDSDGSGGLVWPQQLQPKAFVKIKASHALKKKILRFRSGSLKVMTTV Takifugu_rubripes_dact3b -KERSRNKERLEASLAGLCELELLKQRQESRVLSAL-LFSLLQYFDPSVKQHEAELSVR------LT--------------------------------------GEVFVRSP--ELD--RR-----WSSEAKKHATLA-----KIETYIFGLIQRRTRKPRTSLDAARSLCVNAKYIPASHSPHKPNS-RKKCREDVRKSQENSLQERDRNKKQRRWQSTLELSQDEARRRKRPPEYPERMHPC--SEDYHHQGESESSTSEADSPDSSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKKKILRFRTGSLKLMTTV Oreochromis_niloticus_dact3b MKGRSRNKERLQASLAGLCELELLKQRQESRVLCALESYGLLQGLSASLEEQVAELKVDNLDASQISG-------------------------------------GKASTCSP---KE-TKK----PYMSTLTRHAIVT-----KVETYIFGVIQRRTRKPRTSLDAVRSLCVSAEYIPGYHTHHKSNPPRKKCREDGRKSQENSLQERDRSKKQRRSLSTLELSQDEARRRKRPTEFLERAQLC--TDDYSHQVESESSMSEADSPDSSSLSSDSDESGGLVWPQQLQPKAFVKIKASHALKKKILRFRTGSLKVMTTV Callorhinchus_milii_Dact3 ------------------------------------------------------------------------------------------------------------------------------------------------RVESYIAGLVHKRTRKLRTSLDSPRSLCVGGGYRPIFFSGRKVRKGKRKCREE-RKSQENSLL---QPQAL--------------------------------------------------------------------------------------------------------- Petromyzon_marinus_dactA -------------------------------------------------------------------GFYELSDAGTGSLSTSCNSVFSDLTELQVPSERRPLSTGDLTVRSHSPPW-LTVLDSAESV-APSANPAMTPDTRS-RSDAALPIAKQQ----------------VM-MAIPE-VKAKRCRGRQKRCREDQTASQDNSIVTAARQRRLRRWRSTVEICQGAARRRRVWLSDSEYSAECATDDD---EEDTDCDADDAEDAG-GVGPANVAEGGGLAGSLAS-------------------------------- Lethenteron_japonicum_dactA MGAPRLTAIRLESALAGIRHLESLKRRQGALVRAALVGPHLQHGTAQLLEQRFCELGLRESDSRASSGFYELSDAGTGSLSTSCNSVFSDLTELQAASERRPLSTGDLTVRSHSPPR-LTVLDSVEPG-APSAHPAMTPDTRS-RGDAALPITKQQQQ--------------VM-MAIPE-VKAKRCRGRQKRCREDQTASQDNSIVAAARQRRLRRWRSTVEICQGAARRRRVWLSDSEYSAECATDDD---EEDTDCDVDDAEDAGGGGGPADVAEGGGLTGSTATVPAQICRIKASHALKKKILRCRSGSLKLMTTV Petromyzon_marinus_dactB -------------------------------------------------------------------GYYDLSDG---SLSNSCNSIFNDC--------------GDLGTGPGRYVSDLTSRDGSDVYRYPSPLHAVAIQSPLFRVSGYICSLLDRKRGKPKHEED--LDSC---TAIKSNLGTKRPP---QRARDEMPA-----------------------------------------------------ATDSDKRRGRRRLQGFSAEEEDDVDTGGLAGRRGGGQHAACRIKASRSLKKKMMHFRSGSLKVITTV Lethenteron_japonicum_dactB MSERSRASERLEASMAGLAELELLRRRHEALVRGVLMKEQLLPGLLRHLNEQFSELKMDETDSRPSSGYYDLSDG---SLSNSCNSIFSDCPELPLFARERPLSSGDLGTGPARYVSDLTSRDGSDVYRYPSPLHAVAIQSPLFRVSGYICSLLDRKRGKPKHEED--LDSC---TAIKSNLGTKRPP---PRARDEMPAERCRDVV---GVKRL-----SRELVQSHGRRAPRVRSESEYSAECTSEDEHTTATDSDSDGDAGGFSGSSADEEDDVDNGGLAGRRGGGQHAACRIKASRSLKKKMMHFRSGSLKVITTV Lethenteron_japonicum_dactC -----------------------------------------GLGKPCALERPLSELRVDDVDSRPSSGFYSMSEDGSLSLSNSCSSISSSGVELPSFGPSRPQSS-DL-LDVPRFRCDLRSRDGSEVYRYPSPLHAIAMQSSAFKVTAYIAALLKRRGARPASIADD-DPHV-V-A---------------RICKHGRDDRHLREGVEREYRRRLRRWCSTMEIARGGGMRARAWS-----SAIA--SED---------DADDADEA----AGRLPADG--------------CRVSVPSAVKRKIRQRIADAAKTSTDV Lethenteron_japonicum_dactD ----------------------------------------------------------------------------------------------------------------PRFARDVPSLDGSGLYRYPSALHAVAIQSPALKPDDYIARLLERRKLRSPPLPLPASS---------------------RRCKSLPRAG------AAE-----RRLCRAGDAGGDWADRSAFHDGFADGHADGFHPRGGNPRGDARPQQGKASTGGWGRGVAGPQAGGG--WWGAGVPGPAGLDG-PAARRRALLRCHSVEPALTTTV Petromyzon_marinus_dactD ----------------------------------------------------------------------------------------------------------------PRFARDVPSLDGSGLYRYPSALHAVAIQSPALKPDDYIARLLERRKLRPRRTP----------------------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapiens_Dact2 MGDRRRLGARLRAAFAGLQELQGLRATQQERVRGALLQEQLLRGLKDQLDLQISKLQLDDSDSRPSSGFYEMSDGGSCSLSTSCASVCSDHDETTV-FWPRPVSTGDLQLCGPKYRQDLVSQGGREVYPYPSPLHAVALQSPLFRARAYIDRLLHL-WKEGEQGP---SRL-SGPSFAASE---KKRSRPEQPSLEWGRRSCESTLYPFEARRKHRRWQSTVEISARARPRRRGP-SESKHSAECTSEGEHTTFGDRESSSSDEEGGRDCDLALGYVAA--LAW----SPPKLCRIKASKALKKKIRRFQPTALKVMTMV Monodelphis_domesticus_Dact2 MGDRSRVRERLHAALAGLQELQVLRDKQQALVSGALLKEQLLRGLKDQLDQQISELKLDDSDSRPSSGFYDLSDGGSCSLSNSCTSVYSESDETTVHFKPRPVSTGDLQPCGLKYQSDLVSKSGNDIYPYPSPLHAVALQSPLFPPGGYIDKLLQLTRGVSERGSSISRQL-TGAQFVPGSAKMKKRRRPRRLPAEWNRRSCESSLFSFEARKKQRKWQSTVEISAKTHPRRRILRSDSEYSAECTSEDDYTAFGDSESGDSDSDGASESSLTLDYEEA--LIWPKAIHPPKICRIKASKALKKKIRRFQPASLKVMTMV Gallus_gallus_Dact2 MGDRGRVGERLQAALAGLQELQVLREQQRELVRAALLKEQLLRGLKDQLDQRISELKLDDSDSRPSSGFYDLSDGGSCSLSNSCTSVYSESDETTVHSRPRPVSTGDLQPCAHKFQNDLVSKNGIDVYPYPSPLHAVALQSPLF-PGGYINKLLQLTR-ANERISIIPKQL-RAAQFVPAATKVKKRRKARRLPAEWSRRSCESSLFSLENKKKQRKWQSTVEISAKTHPRRRVLRSDSEYSAECTSEGEFTAFGDSESSESDSDD-NSSSLALDYDEG--LIWPEGSPPPKICRIKASKALKKKIRRFQPASLKVMTMV Anolis_carolinensis_Dact2 MGDRGRVSERLQAALAGLQELQVLREKQRARVRGALLKEQLLRGLKDQLDQQISELKLDDSDSRPSSGFYELSDAGSCSLSNSCTSVFSESDETTVHSRPRPVSTGDLPLCGQKYQSDLISKSGNDVYLYPSPLHAVALQSPLF-PGGYINKLLQLTR-ASERCPIIPKQL-QGAKFVPAAMKVKKRRKPRKLPVEWNRRSCESSLYSLETKKKHRKWQSTVEISAKAHPRKRIMRSDSEYSAECTSEGEYTAFGDSESSESDSEG---SSLTLDYEEEEILIWPDSSPSPKLCRIKASKALKKKIRRFQPASLKVMTMV Chrysemys_picta_bellii_Dact2 MGDRCRVGERLQAALAGLQELQVLREKQRALVSGALLKEQLLRGLKDQLDQQISELKLDDSDSRPSSGFYDLSDGGSCSLSNSCTSVYSESDETTVHSRPRPVSTGDLQPCGQKYQNDLVSKSGNDVYPYPSPLHAVALQSPLF-PGGYINKLLQLTR-ASERVSIIPKQL-QSAQFVPAAMKVKKRRKSRRLPVEWSRRSCESSLFSLETKKKQRKWQSTVEISAKAHPRRRVLRSDSEYSAECTSEGEYTTFGDSESSESDSEG-NSSSLTLDYDDA--LVWPEASPPPKICRIKASKALKKKIRRFQPASLKVMTMV Latimeria_chalumnae_Dact2 MADRSRVGQRLQAALAGLQELQLLRERQGGVVQEALLKEQLLKGLKQQLDQQISELKLDESDSRPSSGFYELSDGGSCSLSNSCTSVYSECDETTVRFRQRPVSTGDLQSYGQKYQSDLVSKNGGDIYLYPSPLHAVALQSPLF-PSGYINKLLQLNK-VNIRGFTPQKSS-KTAKFVPAATKVKRRRKPRRLTAQRGRRSCESTLYSSETKKKQRKWQSAVEISVKAHPKRKVLRSDSEYSAECTSEDEYTTFGDSESSESDSDAT--SSLTLDYDDT--FVWPEASHTPKLCRIKASKALKKKIRKFQPASLKVMTMV Lepisosteus_oculatus_dact2 MGDRGRVGERLQAALAGVQELHLLKERQSGMVQWALLKEQLLRGLKQQLDQQISELKLDESDSRPSSGFYDLSDGGSVSLSNSCTSVYSECDEITVQARPRPVSTGDLYSSGKRYQSNLVSRNGSDVYQYPSPLHAVALQSPIF-PDGYIYKLLQHKK-GCCQV-VFLKLK-QSAKFVPAATKVKKRRNLKGLSAETAKESCQSSLYLPESKKRQRKWQSVVEISTKPSHLRKMMRSESEYSAECSSEGEFTAFGDSESSESSSDGSSSLSLNSE-D---MLVWAQSTRPPPACRIKASKALKKKIRRFQPAALKVMTMV Danio_rerio_dact2 MGDRGRTGERLHAALAGLQELHFLRDKQSAMVHWALLKQQLLRGLKQQLDQQITELKLDESDSRPSSGFYELSDGGSGSLSNSCTSVYSESDESTAQARQRPVSTGDLFPCSQKYQSNLVSSNGTEVYRYPSPLHAVALQSPIF-SVGYINKLLQRSSSKRIETVSQMNSL-QSAQFVPAATKVKRKKFCTRT--DLGKVSCDCSCNAPEAKKKPRKWPSSSEIPLPPN--RKMVRSESEYSAECSSDGEYTTFGDSESSQGSQTA-SDSSLSLDEED-LLLVWAQAARSSAACRIKASRALKKKIRRFQPASLKVMTLV Takifugu_rubripes_dact2 MGDRSRVGERLQAALAGLQELHLLKDRQSDMVSWALLKQQLLRGLKQQLDQQINELKLDESDSRPSSGFYELSDGGSCSLSNSCVSVYSECDESTTQKRPRPVSTGDLFLCKKKFQSNLVSRTGAEVYPYPSPLHAVALQSPIFQT--YIDRLLVRSF-TGPEDVLAVESV-SPAEFVPAATKVKRRKKARKG--EQVKFSGESSHSSLDRKKKQ----SDVEMFHLSC--AQMQM--SEYSAECSSEGENTTFGDSESSQSFLSF-SDSSLSLDEDYQVDLVWAEDSRPPSACRIKASRALKKKIRRFQPASLKVMTLV Oreochromis_niloticus_dact2 MVDRSRVGERLQAALAGLHELQLLRDRQSDMVNWALLKQQLLRGLKQELDQQISELKLDESDSRPSSGFYELSDGGSCSLSNSCNSVYSESDENTTQARPRPVSTGDLHPCNKKFQRNLESRIGTEKYHYPSPLHAVALQSPIFLTH-YIDNLLQRSL-AGSQTLIEKELM-SPAKFVPAASKLKKRKRTRKG--DHAKNSGDSSLYSLERKKRQAKWPSDADMFQASC--APMQM--SEYSAECSSEGENTTFGDSESSQSFQSF-SDSSLSLYEGEQADMVWAEAARPPAACRIKASRALKKKIRRFQPASLKVMTLV Callorhinchus_milii_Dact2 --------------------------------------------------RQISELKLDESDSRPSSGFYDLSDGGSCSLSNSCTSVYSECDETTVQLRQRPVSTGDLPSCARRYRCDLVSKNSSDVYNYPSPLHAVALQSPLFSTTPFNPVMSWPPV-PKLSQQHGFTIS-PKAQFVPAATKVKKRRKLR-IPIDLAAFSCESILYVSNMKKKQRKWQSSVEIFTRVP--SQQQMSDSEYSAECTSEDDHTTFGDGELSGGSVSD-SNSSLSLDDDDPA-LVWPQGLHSAQVCRIKASKALKKKIRRFQPDSLKIMTMV Anolis_carolinensis_Dact4 MGERLGIGERLQATLPGILELDLLRERQRDAVEGAL-PQQVGAAVD-LGMKIVTEQLLLEVDSRPSSGFYDTSEMG--SLSDSCASMHSDGDEAAVRINRRPVSTGDLGS--PQYKADLVSRNTSEVYHYPSPLHAVALQSPLFQLDQYIAKLVLRYK---RTD-SGLKSVC----------------------------SE-GLP-SRELRRRLPKWTSVMEISSRT-PRFRP-M--LAFSSDSGF-ER---ATTSSSS---LAKVSAINLNGD-------WILQQLVRVKLHRSRSFKEFKKAMSRSLRG--SRATK- Chrysemys_picta_bellii_Dact4 MGDRVRIGERLQASLAGILELGLLREMQKGTVESALGQRQVGNTPAALRTTGSSEQLLLEADSRPSSGFYETSEMG--SLSNSSTSMHSECDEATVRAARRPVSTGDLSA--PQYKCDLVSRSTSEIYHYPSPLHAVALQSPLFQLDRYIAKLVLRYR---RTE-PGLKSVC----------------------------REPEGVGSRELRRRPHKWASVLEISSQA-GR-EPP---LAFSTDSGSQLEPQREGSSASS---LSEV-AVSLNGD-------WRLRQLMAFKLHRTRSFKELKRMVSRSLRPLAPKASGA Latimeria_chalumnae_Dact4 MGDRIRIGERLQASLAGILELEVLKTKQKELVEKATKGQQVGTLQPPIATSTSSEILDLESDSRPSSGFYEVSDSGSCSLSNSCTSVYSEGDEAAVRVTRRPFSTGDLDS---KYKCDLISRNTNEVYHYPSPLHAVALQSPLFKLDKYISKLVLRYKHMRRSE-LSLKSIC----------SD-DSN-------------------SRELRKKPQKWMSVLEISNRT-SQRK-----RAFSTDCPSQTDNTTLYGSESS---LSEVSCTSLNRE-------LIHEDRNGIQLYRTKSFKELKKRVSRSMRPFSFKGTSS Lepisosteus_oculatus_dact4 -----------------------------------------PGADCAVSWDALAL-PDPTCDSRPSSGFYSVS--GS-SLSASCGSVCSEGDHSAAQ--RRPVSTGDLDG--PKFCSDLVSRKTKEVYPYPSPLHAVALQSPLYRADRYIGQLLRRYRSLSALD-PGAKSVC---------------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_dact4 MGERVRIGERLKATLAGIMELDLLRGRQLEMVDAVLRGQQ-STSS-TLSWDVPSD-LL--SDSRPSSGFYSVS--GS-SLSDSCFSVSSEADHSATH--RRPFSTGDLDG--PKFCADLVSRKTKEVYPYPSPLHAVALQSPLFQLEQYINRLVHQHHESR--GPTGERSLSLDSERERGTTRLF---SDCGSPRNSPHNHSPRLLSSRE--KFW-SW-DSRSSSLRL-RRRSQG---WRSSFEIRA-RNRK-EEKHHSSTASLFHLSQS-LEGSSH-----SLS---PPAPLTRSRSFRDLGRKVFGSMRSLSFNKNHK Takifugu_rubripes_dact4 MGERVRIGERLKATLAGVLELEVLRCKQLEMVDAALRRQQVLSNS-TLSWDVPSD-LL-DSDSRPSSGFYSVS--GS-SLSDSSYSVSSDAEQIVLS---QPVQQ-DLDSFPPRYCMDLVSRRTKEVYSYPSPLHAVALQSPLFHLEQYITRLARQYHSSDLSAGTHGKSLSLDTDIAGETQSDYPQ-SSSHVPSYASDLHSPRPLQSHK--KIW-EEGERRSSSLKL-RRRSQG---WVSSLDVEA-VRSTKEDKRLSSTASLFNLSQS-LEGSCH-----SIS---PSMPLQRSRSLRDLGRKVFGSMRSLSLKRKPS Oreochromis_niloticus_dact4 MGERVRIGERLKATLAGVLELEVLRCKHLEMVDAALRRQQVSSSS-TLSWDAPSD-LL-DSDSRPSSGFYSVS--GS-SLSDSCYSVSSDAEQVPVC---TPVSG-DLESIPPRYCTDLMSRRTKEVYSYPSPLHAVALQSPLFQLEQYISRLARQYH-SDLTSPTHGKSLSLDTDTAGEAQSDYPQ-SSSHIPSYS-DLRSPRPLQSHKS-KLW-DDGERRSSSLRL-RRRSQG---WVSSLDVEG-VRRAKEDKRLSSTASLFNLSQS-LEGSCH-----SLS---PPLPLQRSRSLRDLGRKVFGSMRSLSLKQKSS Callorhinchus_milii_Dact4 ------------------------------------------------------------------------------------------------------------D---LRYQCDLVSRNSSEVYRYPSPLHAVALQSPLFRLDGYISSLASRRAGGE----RLGRSIC-----------------------------------SHR-GPVG--WASALEISVSLDAQRR--------------------------------------------------------------------------------------- Lepisosteus_oculatus_dact4r MEDRMRIKERFQASLAGLMELELLKSQHQEMVEAALYRYQLVLTPGLQSSLSSEH-LL-DSKSRASSGFCDDD--G--SLSNSCASLCSEAEEGRFG--WVPSSP-DLDQVSPRYRLDLVSHKTKEAYYYPSPLHAVALQSPLYRLEKFISKLVTRWH-----CSASSRSLS---------------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_dact4r MG-RKRIRDRFCATVAGLLELEVLRVKHKVMVETALKLKRSVVL---CSSRSSED-LL-ELQSRSSSGFCESH-----SIPSTCEDSVSSF--------AIPEV----DPVDPNYRSDLP-GH-QGIYRYPSPLHAVALQSPLYGLEEVILKRARVQ-NGD---RHCNKSL----------------------------------------------------------------------------------------------------------------------------------------------------- Branchiostoma_floridae_dact MPDRSLQ-ARLMASEAAMEELRLLRQRQETLVEEAKLRNAVLKDLVHTLNTQILQLKLALPDSRRSSGFFDSSP----SPPLTPDIASPEKDEIIRE--------GESSAR-KKLALRPRSKTGSVCYPYPSPMHAIAIQSDMYPPGGTSAGLLRPVSAKPKPTP---RLLKQEAKSEH-PSNA-KTVIRPRRCNSHETSFQDSNRMSKDRLSQPKRHDGHKDSRQGDKGLRNRHSQSSTSLYDYSSEE-S----DSEINRSDSESDSES-----SDEAGGLVLA-----------------RRRL-SSQDSLSRMFPSC ; END; BEGIN LABELS; TAXAGROUPLABEL Dact1 COLOR = (RGB 1.0 0.03529412 0.03529412) ; TAXAGROUPLABEL Dact3 COLOR = (RGB 1.0 0.03529412 1.0) ; TAXAGROUPLABEL Cyclostome_dact COLOR = (RGB 0.0 0.0 0.0) ; TAXAGROUPLABEL Dact2 COLOR = (RGB 0.03529412 1.0 0.80784314) ; TAXAGROUPLABEL Dact4 COLOR = (RGB 0.03529412 1.0 0.03529412) ; END; BEGIN SETS; TAXPARTITION * UNTITLED = Dact1 : 1 - 11, Dact3 : 12 - 25, Cyclostome_dact : 26 - 32, Dact2 : 33 - 43, Dact4 : 44 - 53; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 320; END; BEGIN NOTES; ALTTAXNAMES * UNTITLED = Hs_1 Md_1 Gg_1 Ac_1 Cpb_1 Xt_1 Lc_1 Lo_1 Dr_1 On_1 Cm_1 Hs_3 Md_3 Ac_3 Cpb_3 Xt_3 Lc_3 Lo_3 Dr_3a Tr_3a On_3a Dr_3b Tr_3b On_3b Cm_3 Pm_A Lj_A Pm_B Lj_B Lj_C Lj_D Pm_D Hs_2 Md_2 Gg_2 Ac_2 Cpb_2 Lc_2 Lo_2 Dr_2 Tr_2 On_2 Cm_2 Ac_4 Cpb_4 Lc_4 Lo_4 Dr_4 Tr_4 On_4 Cm_4 Lo_4r Dr_4r Bfl; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 320; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 320; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1403015588144; linkFile Dact_Puzzle.nex; linkFile Dact_PhyML.nex; linkFile Dact_MrBayes.nex; linkFile Dact_IQTree.nex; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 578549924965149614; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3821448266614088391; mqVersion 275; checksumv 0 3 2626284575 null getNumChars 320 numChars 320 getNumTaxa 54 numTaxa 54 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.2856495688539E14 sumSquares 1.2856495688539E14 longCompressibleToShort false usingShortMatrix false NumFiles 5 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 405; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1322 604; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3821448266614088391 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;