#NEXUS
[written Tue Jun 17 15:33:19 BST 2014 by Mesquite  version 2.75 (build 564) at UNIVERSI-76FA92/148.197.220.108]
BEGIN TREES;
	Title 'Trees from "Dact Puzzle.nex"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Homo_sapiens_Dact1,
		2 Monodelphis_domesticus_Dact1,
		3 Gallus_gallus_Dact1,
		4 Anolis_carolinensis_Dact1,
		5 Chrysemys_picta_bellii_Dact1,
		6 Xenopus_tropicalis_dact1,
		7 Latimeria_chalumnae_Dact1,
		8 Lepisosteus_oculatus_dact1,
		9 Danio_rerio_dact1,
		10 Oreochromis_niloticus_dact1,
		11 Callorhinchus_milii_Dact1,
		12 Homo_sapiens_Dact3,
		13 Monodelphis_domesticus_Dact3,
		14 Anolis_carolinensis_Dact3,
		15 Chrysemys_picta_bellii_Dact3,
		16 Xenopus_tropicalis_dact3,
		17 Latimeria_chalumnae_Dact3,
		18 Lepisosteus_oculatus_Dact3,
		19 Danio_rerio_dact3a,
		20 Takifugu_rubripes_dact3a,
		21 Oreochromis_niloticus_dact3a,
		22 Danio_rerio_dact3b,
		23 Takifugu_rubripes_dact3b,
		24 Oreochromis_niloticus_dact3b,
		25 Callorhinchus_milii_Dact3,
		26 Petromyzon_marinus_dactA,
		27 Lethenteron_japonicum_dactA,
		28 Petromyzon_marinus_dactB,
		29 Lethenteron_japonicum_dactB,
		30 Lethenteron_japonicum_dactC,
		31 Lethenteron_japonicum_dactD,
		32 Petromyzon_marinus_dactD,
		33 Homo_sapiens_Dact2,
		34 Monodelphis_domesticus_Dact2,
		35 Gallus_gallus_Dact2,
		36 Anolis_carolinensis_Dact2,
		37 Chrysemys_picta_bellii_Dact2,
		38 Latimeria_chalumnae_Dact2,
		39 Lepisosteus_oculatus_dact2,
		40 Danio_rerio_dact2,
		41 Takifugu_rubripes_dact2,
		42 Oreochromis_niloticus_dact2,
		43 Callorhinchus_milii_Dact2,
		44 Anolis_carolinensis_Dact4,
		45 Chrysemys_picta_bellii_Dact4,
		46 Latimeria_chalumnae_Dact4,
		47 Lepisosteus_oculatus_dact4,
		48 Danio_rerio_dact4,
		49 Takifugu_rubripes_dact4,
		50 Oreochromis_niloticus_dact4,
		51 Callorhinchus_milii_Dact4,
		52 Lepisosteus_oculatus_dact4r,
		53 Danio_rerio_dact4r,
		54 Branchiostoma_floridae_dact;
	TREE tree_1 = (((28:0.09512999999999994,29:9.999999999843467E-6):0.7632400000000001,(26:0.016690000000000094,27:0.06144000000000016):0.8960699999999999,(((35:0.07667000000000002,37:0.022359999999999935):0.02864,33:0.43670999999999993,34:0.14195000000000002,36:0.09993999999999992,38:0.2254799999999999):0.14329999999999976,((41:0.12407999999999997,42:0.13795000000000002):0.22032999999999991,39:0.21345999999999998,40:0.26622999999999997,43:0.48673999999999995):0.11392999999999986):0.4250600000000002,(((9:0.1306799999999999,10:0.2525599999999999):0.12348999999999988,((1:0.06631000000000009,2:0.039120000000000044):0.05201000000000011,3:0.03865000000000007,4:0.11533000000000015,5:0.022909999999999986,6:0.14595000000000002):0.11594999999999978,7:0.09532999999999969,8:0.10444999999999993,11:0.15812999999999988):0.17298999999999998,((12:0.16434000000000015,13:0.12927):0.34872999999999976,(((20:0.23459999999999992,21:0.1413500000000001):0.15400999999999998,19:0.6257299999999999):0.13851999999999998,(23:0.14982000000000006,24:0.16595000000000004):0.21016999999999997,18:0.16935999999999996,22:0.31800000000000006,25:0.44665):0.28166999999999986,(14:0.15900000000000025,15:0.06720000000000015):0.19145999999999974,16:0.6662399999999999,17:0.18991999999999987):0.24131999999999998):0.1930200000000002,(((44:0.31362,45:0.20452000000000004):0.24652999999999992,46:0.25602000000000014):0.10989000000000004,((52:0.3608100000000001,53:0.94276):0.24164000000000008,51:0.41825):0.2328699999999999,(((49:0.09582999999999986,50:0.0570400000000002):0.27939999999999987,48:0.1735000000000002):0.28681,47:0.3427):0.5002899999999999):1.09711,30:1.29256,31:1.96277,32:0.6193900000000001):0.878885,54:1.75777);

END;


begin figtree;
	set appearance.backgroundColorAttribute = " Default ";
	set appearance.backgroundColour = # - 1;
	set appearance.branchColorAttribute = " User selection ";
	set appearance.branchLineWidth = 2.0;
	set appearance.branchMinLineWidth = 0.0;
	set appearance.branchWidthAttribute = " Fixed ";
	set appearance.foregroundColour = # -16777216;
	set appearance.selectionColour = # -2144520576;
	set branchLabels.colorAttribute = " User selection ";
	set branchLabels.displayAttribute = " Branch times ";
	set branchLabels.fontName = " sansserif ";
	set branchLabels.fontSize = 8;
	set branchLabels.fontStyle = 0;
	set branchLabels.isShown = false;
	set branchLabels.significantDigits = 4;
	set layout.expansion = 0;
	set layout.layoutType = " RECTILINEAR ";
	set layout.zoom = 0;
	set legend.attribute = " Likelihood ";
	set legend.fontSize = 10.0;
	set legend.isShown = false;
	set legend.significantDigits = 4;
	set nodeBars.barWidth = 4.0;
	set nodeBars.displayAttribute = null;
	set nodeBars.isShown = false;
	set nodeLabels.colorAttribute = " User selection ";
	set nodeLabels.displayAttribute = " Likelihood ";
	set nodeLabels.fontName = " Arial ";
	set nodeLabels.fontSize = 9;
	set nodeLabels.fontStyle = 0;
	set nodeLabels.isShown = true;
	set nodeLabels.significantDigits = 4;
	set nodeShape.colourAttribute = " User selection ";
	set nodeShape.isShown = false;
	set nodeShape.minSize = 10.0;
	set nodeShape.scaleType = Width;
	set nodeShape.shapeType = Circle;
	set nodeShape.size = 4.0;
	set nodeShape.sizeAttribute = " Fixed ";
	set polarLayout.alignTipLabels = false;
	set polarLayout.angularRange = 0;
	set polarLayout.rootAngle = 0;
	set polarLayout.rootLength = 100;
	set polarLayout.showRoot = true;
	set radialLayout.spread = 0.0;
	set rectilinearLayout.alignTipLabels = false;
	set rectilinearLayout.curvature = 0;
	set rectilinearLayout.rootLength = 101;
	set scale.offsetAge = 0.0;
	set scale.rootAge = 1.0;
	set scale.scaleFactor = 1.0;
	set scale.scaleRoot = false;
	set scaleAxis.automaticScale = true;
	set scaleAxis.fontSize = 8.0;
	set scaleAxis.isShown = false;
	set scaleAxis.lineWidth = 1.0;
	set scaleAxis.majorTicks = 1.0;
	set scaleAxis.origin = 0.0;
	set scaleAxis.reverseAxis = false;
	set scaleAxis.showGrid = true;
	set scaleBar.automaticScale = true;
	set scaleBar.fontSize = 10.0;
	set scaleBar.isShown = false;
	set scaleBar.lineWidth = 1.0;
	set scaleBar.scaleRange = 0.4;
	set tipLabels.colorAttribute = " User selection ";
	set tipLabels.displayAttribute = " Names ";
	set tipLabels.fontName = " Arial ";
	set tipLabels.fontSize = 11;
	set tipLabels.fontStyle = 1;
	set tipLabels.isShown = true;
	set tipLabels.significantDigits = 4;
	set trees.order = false;
	set trees.orderType = " increasing ";
	set trees.rooting = true;
	set trees.rootingType = " User Selection ";
	set trees.transform = false;
	set trees.transformType = " cladogram ";

END;