#NEXUS
[written Tue Jun 17 15:31:36 BST 2014 by Mesquite  version 2.75 (build 564) at UNIVERSI-76FA92/148.197.220.108]
BEGIN TREES;
	Title 'Trees from "Dact PhyML.nex"';
	LINK Taxa = Taxa;
	TRANSLATE
		1 Homo_sapiens_Dact1,
		2 Monodelphis_domesticus_Dact1,
		3 Gallus_gallus_Dact1,
		4 Anolis_carolinensis_Dact1,
		5 Chrysemys_picta_bellii_Dact1,
		6 Xenopus_tropicalis_dact1,
		7 Latimeria_chalumnae_Dact1,
		8 Lepisosteus_oculatus_dact1,
		9 Danio_rerio_dact1,
		10 Oreochromis_niloticus_dact1,
		11 Callorhinchus_milii_Dact1,
		12 Homo_sapiens_Dact3,
		13 Monodelphis_domesticus_Dact3,
		14 Anolis_carolinensis_Dact3,
		15 Chrysemys_picta_bellii_Dact3,
		16 Xenopus_tropicalis_dact3,
		17 Latimeria_chalumnae_Dact3,
		18 Lepisosteus_oculatus_Dact3,
		19 Danio_rerio_dact3a,
		20 Takifugu_rubripes_dact3a,
		21 Oreochromis_niloticus_dact3a,
		22 Danio_rerio_dact3b,
		23 Takifugu_rubripes_dact3b,
		24 Oreochromis_niloticus_dact3b,
		25 Callorhinchus_milii_Dact3,
		26 Petromyzon_marinus_dactA,
		27 Lethenteron_japonicum_dactA,
		28 Petromyzon_marinus_dactB,
		29 Lethenteron_japonicum_dactB,
		30 Lethenteron_japonicum_dactC,
		31 Lethenteron_japonicum_dactD,
		32 Petromyzon_marinus_dactD,
		33 Homo_sapiens_Dact2,
		34 Monodelphis_domesticus_Dact2,
		35 Gallus_gallus_Dact2,
		36 Anolis_carolinensis_Dact2,
		37 Chrysemys_picta_bellii_Dact2,
		38 Latimeria_chalumnae_Dact2,
		39 Lepisosteus_oculatus_dact2,
		40 Danio_rerio_dact2,
		41 Takifugu_rubripes_dact2,
		42 Oreochromis_niloticus_dact2,
		43 Callorhinchus_milii_Dact2,
		44 Anolis_carolinensis_Dact4,
		45 Chrysemys_picta_bellii_Dact4,
		46 Latimeria_chalumnae_Dact4,
		47 Lepisosteus_oculatus_dact4,
		48 Danio_rerio_dact4,
		49 Takifugu_rubripes_dact4,
		50 Oreochromis_niloticus_dact4,
		51 Callorhinchus_milii_Dact4,
		52 Lepisosteus_oculatus_dact4r,
		53 Danio_rerio_dact4r,
		54 Branchiostoma_floridae_dact;
	TREE tree_1 = ((((((((((5:0.01785476759999982,(4:0.10412292220000019,3:0.022153581300000003):0.017765966099999808):0.015689729700000044,(2:0.0401879259000002,1:0.06583305020000019):0.042679658499999995):0.029727542799999895,6:0.11541216289999978):0.06795737990000017,7:0.07917762870000011):0.02646509340000014,((10:0.2516668901000001,9:0.13299656680000016):0.0926848161999998,8:0.05571501430000003):0.0428651577000001):0.0503264134000001,11:0.09645228579999987):0.14077548340000012,((17:0.1244364351999998,(((16:0.5925309883000001,(13:0.12610093860000005,12:0.14482319109999997):0.14472248369999985):0.07461886219999991,14:0.16700996849999994):0.02049766799999997,15:0.06412020520000006):0.24346172160000012):0.041720836500000136,((((25:0.3179426379999999,19:0.546213287):0.05653259430000013,(21:0.13650447500000018,20:0.2399499613999998):0.16535307580000014):0.08142909469999982,(22:0.2838728614999999,(24:0.16617065249999996,23:0.14814666209999983):0.16517666649999985):0.047342904000000186):0.07269933280000007,18:0.10382221189999985):0.2130953085999998):0.1630059545):0.12527480329999996,((29:1.000000082740371E-10,28:0.09535510019999993):0.5778670672000001,((27:0.059265050400000074,26:0.019903745300000164):0.6983634158000003,((32:1.000000082740371E-10,31:0.11881523909999991):1.3138057403000003,30:0.7174833493000001):0.32262065070000023):0.0780572020000001):0.15639064089999977):0.055400062599999966,((((38:0.13011737759999997,((33:0.42989728120000015,34:0.07444176020000004):0.0512524592000001,((37:0.018235522999999976,36:0.09722201880000014):0.010141057899999861,35:0.07515928270000005):0.024048153299999875):0.10320015199999988):0.0713946955,(((42:0.13905923620000005,41:0.12228707269999983):0.16766020820000005,40:0.18887494370000013):0.1239601653000002,39:0.1719000772000001):0.10201388459999983):0.04984771780000008,43:0.3830722937000002):0.10200235300000005,(51:0.44974062690000016,(46:0.2428796071999999,((45:0.19673747050000046,44:0.3105528498000001):0.21209405159999983,((53:0.9327113624000001,52:0.3268535772000001):0.35146091859999995,(47:0.3457821489999997,(48:0.18186939980000005,(50:0.05093711329999984,49:0.09573971789999991):0.25127774989999985):0.24627526450000037):0.33277293409999986):0.22660814259999995):0.05134460249999995):0.4091703675999998):0.3888161159000001):0.2599521426):0.7966113914,54:1.5932227828000003);

END;


begin figtree;
	set appearance.backgroundColorAttribute = " Default ";
	set appearance.backgroundColour = # - 1;
	set appearance.branchColorAttribute = " User selection ";
	set appearance.branchLineWidth = 2.0;
	set appearance.branchMinLineWidth = 0.0;
	set appearance.branchWidthAttribute = " Fixed ";
	set appearance.foregroundColour = # -16777216;
	set appearance.selectionColour = # -2144520576;
	set branchLabels.colorAttribute = " User selection ";
	set branchLabels.displayAttribute = " Branch times ";
	set branchLabels.fontName = " sansserif ";
	set branchLabels.fontSize = 8;
	set branchLabels.fontStyle = 0;
	set branchLabels.isShown = false;
	set branchLabels.significantDigits = 4;
	set layout.expansion = 0;
	set layout.layoutType = " RECTILINEAR ";
	set layout.zoom = 0;
	set legend.attribute = " Likelihood ";
	set legend.fontSize = 10.0;
	set legend.isShown = false;
	set legend.significantDigits = 4;
	set nodeBars.barWidth = 4.0;
	set nodeBars.displayAttribute = null;
	set nodeBars.isShown = false;
	set nodeLabels.colorAttribute = " User selection ";
	set nodeLabels.displayAttribute = " Likelihood ";
	set nodeLabels.fontName = " sansserif ";
	set nodeLabels.fontSize = 9;
	set nodeLabels.fontStyle = 0;
	set nodeLabels.isShown = true;
	set nodeLabels.significantDigits = 2;
	set nodeShape.colourAttribute = " User selection ";
	set nodeShape.isShown = false;
	set nodeShape.minSize = 10.0;
	set nodeShape.scaleType = Width;
	set nodeShape.shapeType = Circle;
	set nodeShape.size = 4.0;
	set nodeShape.sizeAttribute = " Fixed ";
	set polarLayout.alignTipLabels = false;
	set polarLayout.angularRange = 0;
	set polarLayout.rootAngle = 0;
	set polarLayout.rootLength = 100;
	set polarLayout.showRoot = true;
	set radialLayout.spread = 0.0;
	set rectilinearLayout.alignTipLabels = false;
	set rectilinearLayout.curvature = 0;
	set rectilinearLayout.rootLength = 100;
	set scale.offsetAge = 0.0;
	set scale.rootAge = 1.0;
	set scale.scaleFactor = 1.0;
	set scale.scaleRoot = false;
	set scaleAxis.automaticScale = true;
	set scaleAxis.fontSize = 8.0;
	set scaleAxis.isShown = false;
	set scaleAxis.lineWidth = 1.0;
	set scaleAxis.majorTicks = 1.0;
	set scaleAxis.origin = 0.0;
	set scaleAxis.reverseAxis = false;
	set scaleAxis.showGrid = true;
	set scaleBar.automaticScale = true;
	set scaleBar.fontSize = 10.0;
	set scaleBar.isShown = true;
	set scaleBar.lineWidth = 1.0;
	set scaleBar.scaleRange = 0.0;
	set tipLabels.colorAttribute = " User selection ";
	set tipLabels.displayAttribute = " Names ";
	set tipLabels.fontName = " Arial ";
	set tipLabels.fontSize = 11;
	set tipLabels.fontStyle = 1;
	set tipLabels.isShown = true;
	set tipLabels.significantDigits = 4;
	set trees.order = false;
	set trees.orderType = " increasing ";
	set trees.rooting = true;
	set trees.rootingType = " User Selection ";
	set trees.transform = false;
	set trees.transformType = " cladogram ";

END;