#NEXUS [written Thu Jul 23 10:45:56 EEST 2015 by Mesquite version 2.75 (build 564) at Eugene-PC/10.51.2.35] BEGIN TAXA; TITLE Taxa_for_ITS_matrix; DIMENSIONS NTAX=17; TAXLABELS Phanerochaete_sordida_EU118653 Hyphoderma_setigerum_GQ409523 Hyphoderma_litschaueri_KJ140573 Hyphoderma_prosopidis_HE577029 Hyphoderma_nemorale_KC928280 Hyphoderma_nudicephalum_AJ534268 Hyphoderma_granuliferum_JN710545 Hyphoderma_macaronesicum_HE577027 Hyphoderma_moniliforme_KC928284 Hyphoderma_setigerum_GQ409528 Hyphoderma_nemorale_KJ885183 Hyphoderma_subsetigerum_AJ534275 Hyphoderma_definitum_AJ534293 Hyphoderma_setigerum_KJ140750 Hyphoderma_macaronesicum_HE577028 Hyphoderma_moniliforme_KC928282 Hyphoderma_nudicephalum_AJ534267 ; END; BEGIN CHARACTERS; TITLE ITS_matrix; DIMENSIONS NCHAR=622; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phanerochaete_sordida_EU118653 CAGGTTGTAGCTGGCCCCCAG-GGGGCATGTGCACGCCTG--GCTCATCCACTCCTTCAACCTC-TGTGCACTTGTTGTA--GGTCGGCGGA--AGGGAGAGTCTGGTTTCATTACTGTGAC--TTGCTTGGAAGCCTTCCTATGTC-----TTTACAAACG----CTTCAGTTTAAGAATGTAAA--TCTGCGTA--TAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGGTATTCCGGGGAGCATGCCTGTTTGAGTGTCATGGTACTCTCAATCTTCATAACTTTG--------TTGTTATCGAAGGTTTGGAT-TTGGAGGTT---GTGCCGGCTTCTTGTCAAGTCGGCTCCTCTTAAATGGATTAGCGTGAGTGTA--ACGGATCG--CTTCGGTGTGATAATTATCTGCGCCGT---GGTTGTGAAGTAAC--ATCAGCTTGCGC-TTCTAACCGTCCTTCAGCTG-GACAAATTT---ACTCTGACATCTGGCCTCAAATCAGGTAGGA Hyphoderma_setigerum_GQ409523 AAAGTTGTCGCTGGCCTTTCT---GGCATGTGCACACTTT--GTTAATTCATCCAACACACCTC-TGTGCACTTTTCATG--GATTGACATA--CGAGGAGGTTAC----GGCCTC-------------CCTCGGTCTCTCTATGTATTATAACCACAAACA------TCAGTATTAGAATGTACT--CTTGCGAT--AATCGCATTGAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATCTCTCAATCTTCTCAGT------------TTTTCTGAGAGGGATTGGAA-TTGGAAGCT-----GCCG------TTGTAAAATGGCTCTTCTCAAAAGCATTAGTGTGAATGTT--ACCGAATGTTCTCCAGTGTAATAATCATTTGCGCTGCAAGAGCTTCAGTAGAAT---TAAGTTCATGC-TTCCAACCGTCTGTCT-CA---GACAATAC----ACTTTGCGTTTGACCTCAAATCAGGTAGGA Hyphoderma_litschaueri_KJ140573 GGAGTTGTCGCTGGTCTTTCTTAAGGCATGTGCACGCTTC-ATTCAATTCATCC-ATATACCTC-TGTGCACTCTTCGTA--GACTGGCTCGT-TATTATGGCTATCTTGGTAGTC-------------AGAGAGTCTATCTATGCATTTT-ATCACAAACA--TCATCAGTTCTTTGAATGTAAA--ATTGCTAT--AAACGCA-TTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTAATCCTCAATCCCCTTTAGTT----------TTTACTGACTGGGATTGGATCTTGGAGGTT-----GCTGGTTGATTCTTCAATCAGCTCCTCTTAAATGCATTAGTGTGAACCCTTGCTCAAGTGTTCTCCAGTGTAATAATTATTTGCGCTGCTAGAGACTTGGCATTTAC-AGTGATTCATGC-TTCCAATCATCCCTTGTGG---GATAACAT----ACTTTGCATTTGACCTCAAATCAGGTAGGA Hyphoderma_prosopidis_HE577029 GGGGTTGTCGCTGGCCTGTAT--GGGCATGTGCACGCCTT-ATTWAATTCATCC-ACACACCTC-TGTGCACTATTCATA--GGTTGGCTCGTTTGATACGGTTTGCTCTCTGAGC------TTTCTGTAGAGAGTCTCTCTATGTATTCT-ATCACAAACT---TTTTCAGTCTTTGAATGTCTA--CTTGCGATAATAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTAATCCTCAGCTCCCTCAGATTG---------TTGTCTGAGGAAAGCTGGAC-TTGGAGGTTTGCAGGTTCAATTCAGTTTGAATCAGCTCCTCTTAAATGCATTAGTGTGAATGTT--ACCAAATGTTCTCCAGTGTAATAATTATTTGCGCTGCCGTGACTTTGGTATAAT--GACTGTTCATGC-TTCAAACCGTTCCCTAAAGG-GAACAATAT--AAACTTTGCATTTGACCTCAAATCAGGTAGGA Hyphoderma_nemorale_KC928280 GGGGTTGTAGCTGGCTCTTTG--TAGCATGTGCACGCCTTTGTTCAATTCATCC-ACATACCTC-TGTGCACTTCTCATA--GGTTGGCTCGTTATGAAGGACCGTCTTTATTGATCG---------CTCGAGAGTCTCTCTATGTATTTT-ACCACAAACA--TTATAAAGTCTTTGAATGTA-AACTTTGCTAT--AAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATCCCTCAACCCCCTTTGGTTTTTTTTAAAAAATTAAAGGCTGGATTGGAT-TTGGAGGCT-----GCTGGTTTTTAATCGAATCGGCTCCTCTTAAATGCATTAGTGTGGATGTT--ACCGAACGTTCTCCGGTGTAATAATTATTTGCGCTGTT-GATCTTTGGTAGACTT-TATCGTTCATGC-TTCGAACCGTCATTTGTTT---GACAACATA-AAACTTTGCATTtGACCTCaAATCAgGtAGga Hyphoderma_nudicephalum_AJ534268 AAGGTTGTCGCTGGCCTATTC---GGCATGTGCACGCCTT--GTAAATTCATCC-ATACACCTCTTGTGCACTTTTCATA--GATTGACGTT--ACGGTGGATTGCCTATGGTGAT-----------TCTGCTAGTCTCTCTGTGTATTTT---TATAAACT------TCAGTATATGAATGTATA--CCTGCGAT-AAAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATTCCTCAATCTTCTTGGATT----------TTATTCGAGATAGATTGGAT-GTGGAGGCT-----GCTG--TTTAATCTTGAACAGCTCTTCTGAAATGCATTAGTGTGAATGTT--ACCGAACGTTCTCCAGTGTAATAATTATTTGCGCTGCTAGAGCCTTGGTAGAAT---ATTGTTCATGC-TTCAAACCGTCTGCTTGCA---GACAATAA----CCTTTGCGTTTGACCTCAAATCAGGTAGGA Hyphoderma_granuliferum_JN710545 GAGGTTGTCGCTGACCCTTGT---GGTATGTGCACGCCTT--GTCAATTCATCC-ATATACCTC-TGTGCACTCTTCATA--GGTTGGCTCA--TATGGTGTTGCTTTTTAGTAGC-------------TCCGAGTCTCTCTATGTATTTT-ATTACAAACA--TTATAAAGTCTAAGAATGTC-A--TTAGCGTC--TAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATTCCTCAGTCCTCTCAGAGTTTTT------CTCTTGAGTCTGGACTGGAC-TTGGAGGCT-----GCTGGTTTTATTTTAAATCAGCTCCTCTTAAATGAATTAGTGTGAATATT--GCCAAATGTTCTCCAGTGTAATAATTATTTGCGCTGCATGAACTGAGGCAGATTTAATATGTTCATGCTTTCTAACCGTCCCCAG-CG---GACAATAATACTTTTTGACATTTGACCTCAAATCAGGTAGGA Hyphoderma_macaronesicum_HE577027 ATGGTTGTCGCTGGCCTGTAT--GGGCATGTGCACGCCTT-GTTAAATTCCTCC-ACACACCTC-TGTGCACCATTCATA--GGTTGGCTCGTTTGATACGGTTTGCTTTCTTCACTGGGAGCTGCCGTAGAGAGTCTCTCTATGCATTTT-ATTACAAACG---TTTTCAGTCTTTGAATGTACA--CCTGCGAT-ATAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTAATCCTCAGCTCCCCCTGATTTT--------CTTTTGGGGGGAAGCTGGAC-TTGGAGGTCTGCMGGTTCAATTCAGTTTGAATCAGCTCCTCTTAAATATATTAGTGTGGATGTT--ACCAAACGTTCTCCAGTGTGATAATTATCTGCGCTGCTGTGACTTTGGTATAGC--AATCGTTCATGC-TTCCAACCGTTCTCTCCATGGGAACAAAATA-AACCTTTGCGTTTGACCTCAAATCAGGTAGGA Hyphoderma_moniliforme_KC928284 GGGGTTGTAGCTGGTCTTCTT-AGACATTGTGCACACCTCGTTCAAATTCATCC-ATACACCTCTTGTGCACCTTTCATATGGATTGGCTCGT-TATTATGGCTTC-------------------GGTCAGAGAGTCTCTCTATGTGTATCTATCACAAACTTTTAAATCAGTCTATGAATGTTTACTATTGCTAT--AAACGCATTATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTAATCCTCAATCTCTATAGGTTTTTA------ACGATCTATTGAGATTGGAC-TTGGAGACT-----GTCGGTTTTATATTGAATCGACTTCTCTTAAATGTATTAGTGTGGATGTTTACTCAGACGTTCTCCAGTGTAATAATCATTTGCGCTGTTGTGACTCTAGTATAATCTATATGTTCATGC-TTACAACCGTCTCTTTACTG-AGACAATATA-AACCTTTGCGTTTGACCTCAAATCAGGTAGGA Hyphoderma_setigerum_GQ409528 AAAGTTGTCGCTGGCCTTTCT---GGCATGTGCACACTTT--GTTAATTCATCCAACACACCTC-TGTGCACTTTTCATG--GATTGACATA--CGAGGAGGTTAC----GGCTTC-------------CCTCGGTCTCTCTATGTATTATAACCACAAACA------TCAGTATTAGAATGTACT--CTTGCGAT--AATCGCATTGAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATCTCTCAATCTTCTCAGT------------TTTTCTGAGAGGGATTGGAA-TTGGAAGCT-----GCCG------TTGTAAAATGGCTCTTCTCAAAAGCATTAGTGTGAATGTT--ACCGAATGTTCTCCAGTGTAATAATCATTTGCGCTGCAAGAGCTTCAGTAGAAT---TAAGTTCATGC-TTCCAACCGTCTGTCT-CA---GACAATAC----ACTTTGCGTTTGACCTCAAATCAGGTAGGA Hyphoderma_nemorale_KJ885183 GGGGTTGTAGCTGGCTCTCTG--TAGCATGTGCACGCCTTTGTTCAATTCATCC-ACACACCTC-TGTGCACTTTTCATA--GGTTGGCTCGTTATAAAGGACCGTCTCTAATGACCG--------TTTCGAGAGCCTCCCTGTGTATTTT-ACCACAAACATTTTAAAAAGTCTATGAATGTACAACTTTGCTAT-AAAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATCTCTCAATCCCCTTTGGTTTTTT------GATTGAAGGCTGGATTGGAT-TTGGAGGCT-----GCTGGTTTTT--TTTAATCGGCTCCTCTTAAATGCATCAGTGTGGATGTT--ACCGAACGTTCTCTGGTGTAATAATTATTTGCGCTGTT-GATCTTTGGTAGACTT-TATCGTTCATGC-TTCAAACCGTCATTTATTT---GACAACGTA-AAACATTGCATTtGACCTCAAATCAGGTAGGA Hyphoderma_subsetigerum_AJ534275 AGAGTTGTCGCTGGCCATCT----GGCATGTGCACGCTCT--GCTAATTCATCC-ACACACCTC-TGTGCACCTCTCATA--GATTGACATA--CGGTAGAGTTCATTCT------------------CTGCCAGTCTTTCTGTGTTATATCACTACAAACA------TCAGTATCAGAATGTCTA--CTTGCGAT--AAACGCA-TTAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCTTTGGTATTCCGAAGAGCATGCCTGTTTGAGTGTCATGTATTCCTCAATCTACATGGAT-----------TTTTCTATGGCAGATTGGAT-TTGGAAGCT-----GCTG-TTCATACCATGATCAGCTCTTCTTAAATGTATTAGTGTGAATGTT--GTCAGACGTTCTCCAGTGTAATAATCATTTGCGCTGCAAGGACTTTGGCAGATT--ATATGTTCATGC-TTCTAATCGTCTGTTT-CA---GACAATAC----CTTTTGCGTTTGACCTCAAATCAGGTAGGA Hyphoderma_definitum_AJ534293 CGGGTTGTTGCTGGSCCACTG---GGCATGTGCACACTTT--GTCAATTCATCC-ACATACCTT-TGTGCACTCTCCATG--GATTGGCTTGCTCTATAGGGTTGTTATAAATGAC-------------TCTAAGCCTTTCTATGT------ATTACAAACA--TATTTCAGTCTTTGAATGTA----TTTGCGAT--TAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATACCTCAGCCCTCTTGGAT-----------TTTCTGAGATGGGACTGGAT-GTGGAGGTT-----GCTGGTCTTTCATCAAGTCAGCTTCTCTGAAATGCATTAGTGTGAATGTT--ACTGAATGTTCCCCAGTGTGATAATTATCTGCATTGTTGGAACTTTGGTTGATCT-ATATGTTCATGC-TTATAACTGTCCTTGACTG---GACAATAT---ACTTTTGCATTTGACCTCAAATCAGGTAGGA Hyphoderma_setigerum_KJ140750 AAAGTTGTCGCTGGCCTCCTG---GGCATGTGCACACTTT--GTTAATTCATCC-ACACACCTC-TGTGCACTTTTCATA--GATTGACGTT--ATAGTGGGCAAC-----------------------CGCTGGTCTCTCTGTGTACCTT--TAACAAACA------TCAGTTTAAGAATGTACG--CTTGCGAT--AATCGCATTGAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATTCCTCAATCTCTTCAGTT-----------TATTCTGAGGCAGATTGGAT-GTGGAAGCT-----GCTGGTTTGAGTCTGAATCAGCTCTTCTTAAATGCATTAGTGTGAATGTT--ACCAAGCGTTCTCCGGTGTAATAATTATTTGCGCCGCTGGGACTTTGGTAGACT--ATGCGTTCATGC-TTCTTAACCGTCTGTTATA---GACAATAC----ACTTTGYGTTTGACCTCAAATCAGGTAGGA Hyphoderma_macaronesicum_HE577028 ATGGTTGTCGCTGGCCTGTAT--GGGCATGTGCACGCCTT-GTTAAATTCCTCC-ACACACCTC-TGTGCACCATTCATA--GGTTGGCTCGTTTGATACGGTTTGCTTTCTTCACTGGGAGCTGCCGTAGAGAGTCTCTCTATGCATTTT-ATTACAAACG---TTTTCAGTCTTTGAATGTACA--CCTGCGAT-ATAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTAATCCTCAGCTCCCCCTGATTTT--------CTTTTGGGGGGAAGCTGGAC-TTGGAGGTCTGCAGGTTCAATTCAGTTTGAATCAGCTCCTCTTAAATATATTAGTGTGGATGTT--ACCAAACGTTCTCCAGTGTGATAATTATCTGCGCTGCTGTGACTTTGGTATAGC--AATCGTTCATGC-TTCCAA?CGTTCTCTCCATGGGAACAAAATA-AACCTTTGCGTTTGACCTCAAATCAGGTAGGA Hyphoderma_moniliforme_KC928282 AGGGTTGTAGCTGGTCTTCTT-AGACATTGTGCACACCTTGTTCAAATTCATCC-ATACACCTCTTGTGCACCTTTCATATGGATTGGCTCGT-TATCATGGCTTC-------------------GGTCAGAGAGTCTCTCTATGTGTATCTATCACAAACTTTTAAATCAGTCTATGAATGTTTACTATTGCTAT--AAACGCATTATAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTAATCCTCAATCTCTATAGGTTTTTA------ATGATCTATTGAGATTGGAC-TTGGAGACT-----GTCGGTTTTGTATGAAATCGACTTCTCTTAAATGTATTAGTGTGGATGTTTACTCAGACGTTCTCCAGTGTAATAATCATTTGCGCTGTTGTGACTCTAGTATAATCTATATGTTCATGC-TTACAACCGTCTCTTTACTG-AGACAATATA-AACCTTTGCGTGTGACCTCAAATCAGGTAGGA Hyphoderma_nudicephalum_AJ534267 AAGGTTGTCGCTGGCCTATTC---GGCATGTGCACGCCTT--GTAAATTCATCC-ATACACCTCTTGTGCACTTTTCATA--GATTGACGTT--ACGGTGGATTGCCTATGGCGAT-----------TCCGCTAGTCTCTCTGTGTATTTT---TATAAACT------TCAGTATATGAATGTATA--CCTGCGAT-AAAACGCATTTAAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGTATTCCTCAATCTTCTTGGATT----------TTATTCGAGATAGATTGGAT-GTGGAAGCT-----GCTG--TTTACTCTTGAACAGCTCTTCTGAAATGCATTAGTGTGGATGTT--ACCGAACGTTCTCCAGTGTAATAATTATTTGCGCTGCTAGAGCCTTGGTAGAAT---ATTGTTCATGC-TTCAAACCGTCTGCTTGCA---GACAATAA----CCTTTGCGTTTGACCTCAAATCAGGTAGGA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 622; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 622; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 622; END; BEGIN TREES; Title 'Trees from "2HyphodermaITS.tre"'; LINK Taxa = Taxa_for_ITS_matrix; TRANSLATE 1 Phanerochaete_sordida_EU118653, 2 Hyphoderma_setigerum_GQ409523, 3 Hyphoderma_litschaueri_KJ140573, 4 Hyphoderma_prosopidis_HE577029, 5 Hyphoderma_nemorale_KC928280, 6 Hyphoderma_nudicephalum_AJ534268, 7 Hyphoderma_granuliferum_JN710545, 8 Hyphoderma_macaronesicum_HE577027, 9 Hyphoderma_moniliforme_KC928284, 10 Hyphoderma_setigerum_GQ409528, 11 Hyphoderma_nemorale_KJ885183, 12 Hyphoderma_subsetigerum_AJ534275, 13 Hyphoderma_definitum_AJ534293, 14 Hyphoderma_setigerum_KJ140750, 15 Hyphoderma_macaronesicum_HE577028, 16 Hyphoderma_moniliforme_KC928282, 17 Hyphoderma_nudicephalum_AJ534267; TREE ITS_con50majrule = (1:0.2426676224160221,7:0.08741853023808417,13:0.0900947148664767,(((((2:0.001871224206971058,10:0.001407408253198565):0.06688097247557452,14:0.06741989402064034):0.01904875666283052,12:0.08160925558247589):0.01349953566625094,(6:0.003151389691653577,17:0.005407354771148176):0.05355096157848138):0.05385691464346363,(((3:0.09895699531121016,(9:0.002480079913091413,16:0.009354423465899969):0.1082728480838954):0.02282613601459345,(4:0.02173223330231193,(8:9.031516052244597E-4,15:8.800508985580725E-4):0.05099630939269186):0.06456558226824101):0.02439950012983953,(5:0.01157431395258562,11:0.02420060732762234):0.06926794493467328):0.01966060956125563):0.01604874757377306); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1437637556235; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1766625753437681555; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5517805559271396605; mqVersion 275; checksumv 0 3 802614763 null getNumChars 622 numChars 622 getNumTaxa 17 numTaxa 17 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 247602.0 sumSquares -3.2281802128991707E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 320; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 629; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1766625753437681555 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1766625753437681555; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 363; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1046 562; setLocation -9 0; setFont SanSerif; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1046 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1766625753437681555 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlockInt 0; toggleUseWeights off; endTell; setAssignedID 2656.1437637233485.5404938549291078837; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1046 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5517805559271396605 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 205; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1046 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;